RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 NISCHQ9Y2I1 1504 aa31.14■■■□□ 2.57
SMAD3-206ENST00000558739 ABCC9O60706 1549 aa29.15■■■□□ 2.26
SMAD3-206ENST00000558739 CCDC180Q9P1Z9 1646 aa28.28■■■□□ 2.12
SMAD3-206ENST00000558739 DNAJC5BQ9UF47 199 aa28.09■■■□□ 2.09
SMAD3-206ENST00000558739 RB1CC1Q8TDY2 1594 aa27.27■■□□□ 1.96
SMAD3-206ENST00000558739 PABPN1Q86U42 306 aaKnown RBP eCLIP27■■□□□ 1.91
SMAD3-206ENST00000558739 NACADO15069 1562 aa26.88■■□□□ 1.89
SMAD3-206ENST00000558739 UNC13AQ9UPW8 1703 aa26.83■■□□□ 1.89
SMAD3-206ENST00000558739 BICRAQ9NZM4 1560 aa26.65■■□□□ 1.86
SMAD3-206ENST00000558739 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
SMAD3-206ENST00000558739 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
SMAD3-206ENST00000558739 CC2D2AQ9P2K1 1620 aa26.28■■□□□ 1.8
SMAD3-206ENST00000558739 DNAJC5Q9H3Z4 198 aa26.23■■□□□ 1.79
SMAD3-206ENST00000558739 MYO15BQ96JP2 1530 aa26.19■■□□□ 1.78
SMAD3-206ENST00000558739 EIF4G1Q04637 1599 aaKnown RBP26.01■■□□□ 1.75
SMAD3-206ENST00000558739 SHROOM4Q9ULL8 1493 aa25.99■■□□□ 1.75
SMAD3-206ENST00000558739 SCRIBQ14160 1630 aa25.84■■□□□ 1.73
SMAD3-206ENST00000558739 ZCCHC6Q5VYS8 1495 aaKnown RBP25.67■■□□□ 1.7
SMAD3-206ENST00000558739 DCAF1Q9Y4B6 1507 aa25.59■■□□□ 1.69
SMAD3-206ENST00000558739 CUX2O14529 1486 aa25.34■■□□□ 1.65
SMAD3-206ENST00000558739 ERCC6Q03468 1493 aa25.15■■□□□ 1.62
SMAD3-206ENST00000558739 NESP48681 1621 aa24.86■■□□□ 1.57
SMAD3-206ENST00000558739 NCAPD3P42695 1498 aa24.83■■□□□ 1.57
SMAD3-206ENST00000558739 TRIM41Q8WV44 630 aa24.82■■□□□ 1.56
SMAD3-206ENST00000558739 THOC2Q8NI27 1593 aaKnown RBP24.76■■□□□ 1.55
SMAD3-206ENST00000558739 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.54
SMAD3-206ENST00000558739 HMGXB3Q12766 1538 aa24.61■■□□□ 1.53
SMAD3-206ENST00000558739 SMARCA2P51531 1590 aa24.58■■□□□ 1.52
SMAD3-206ENST00000558739 SMARCA4P51532 1647 aa24.51■■□□□ 1.51
SMAD3-206ENST00000558739 KIF21AQ7Z4S6 1674 aa24.51■■□□□ 1.51
SMAD3-206ENST00000558739 BAZ1BQ9UIG0 1483 aaKnown RBP24.4■■□□□ 1.5
SMAD3-206ENST00000558739 LAMC3Q9Y6N6 1575 aa24.4■■□□□ 1.5
SMAD3-206ENST00000558739 PDS5BQ9NTI5 1447 aa24.24■■□□□ 1.47
SMAD3-206ENST00000558739 BAZ1AQ9NRL2 1556 aaPredicted RBP24.24■■□□□ 1.47
SMAD3-206ENST00000558739 PEG3Q9GZU2 1588 aa24.22■■□□□ 1.47
SMAD3-206ENST00000558739 WDR62O43379 1518 aa24.17■■□□□ 1.46
SMAD3-206ENST00000558739 MRC2Q9UBG0 1479 aa24.17■■□□□ 1.46
SMAD3-206ENST00000558739 MROH2BQ7Z745 1585 aa24.05■■□□□ 1.44
SMAD3-206ENST00000558739 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
SMAD3-206ENST00000558739 OSCARQ8IYS5 282 aa23.98■■□□□ 1.43
SMAD3-206ENST00000558739 RIMBP3CA6NJZ7 1639 aa23.94■■□□□ 1.42
SMAD3-206ENST00000558739 RIMBP3BA6NNM3 1639 aa23.94■■□□□ 1.42
SMAD3-206ENST00000558739 RIMBP3Q9UFD9 1639 aa23.94■■□□□ 1.42
SMAD3-206ENST00000558739 CEP164Q9UPV0 1460 aa23.9■■□□□ 1.42
SMAD3-206ENST00000558739 FANCD2Q9BXW9 1451 aa23.82■■□□□ 1.4
SMAD3-206ENST00000558739 ARHGEF11O15085 1522 aa23.75■■□□□ 1.39
SMAD3-206ENST00000558739 WIZO95785 1651 aa23.75■■□□□ 1.39
SMAD3-206ENST00000558739 URB2Q14146 1524 aaKnown RBP23.74■■□□□ 1.39
SMAD3-206ENST00000558739 CFTRP13569 1480 aa23.62■■□□□ 1.37
SMAD3-206ENST00000558739 ZNF608Q9ULD9 1512 aaPredicted RBP23.6■■□□□ 1.37
SMAD3-206ENST00000558739 CYB5RLQ6IPT4 315 aa23.56■■□□□ 1.36
SMAD3-206ENST00000558739 TRHP20396 242 aaPredicted RBP23.52■■□□□ 1.36
SMAD3-206ENST00000558739 ARAP1Q96P48 1450 aa23.5■■□□□ 1.35
SMAD3-206ENST00000558739 IFT140Q96RY7 1462 aa23.43■■□□□ 1.34
SMAD3-206ENST00000558739 EIF4G3O43432 1585 aaKnown RBP23.42■■□□□ 1.34
SMAD3-206ENST00000558739 CHD1O14646 1710 aa23.41■■□□□ 1.34
SMAD3-206ENST00000558739 PRDM2Q13029 1718 aa23.37■■□□□ 1.33
SMAD3-206ENST00000558739 AEBP2Q6ZN18 517 aaPredicted RBP23.37■■□□□ 1.33
SMAD3-206ENST00000558739 TOP2AP11388 1531 aaKnown RBP23.32■■□□□ 1.32
SMAD3-206ENST00000558739 TOPBP1Q92547 1522 aa23.3■■□□□ 1.32
SMAD3-206ENST00000558739 RSF1Q96T23 1441 aaPredicted RBP23.24■■□□□ 1.31
SMAD3-206ENST00000558739 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.312e-6■■■■□ 26.1
SMAD3-206ENST00000558739 TARBP1Q13395 1621 aaKnown RBP23.19■■□□□ 1.3
SMAD3-206ENST00000558739 FBLN2P98095 1184 aa23.17■■□□□ 1.3
SMAD3-206ENST00000558739 DNMBPQ6XZF7 1577 aa23.12■■□□□ 1.29
SMAD3-206ENST00000558739 CLASP1Q7Z460 1538 aa23.08■■□□□ 1.29
SMAD3-206ENST00000558739 CCDC88BA6NC98 1476 aa23.07■■□□□ 1.28
SMAD3-206ENST00000558739 POLA1P09884 1462 aaPredicted RBP23.03■■□□□ 1.28
SMAD3-206ENST00000558739 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
SMAD3-206ENST00000558739 RAD54L2Q9Y4B4 1467 aa22.98■■□□□ 1.27
SMAD3-206ENST00000558739 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
SMAD3-206ENST00000558739 TDRD9Q8NDG6 1382 aaKnown RBP22.95■■□□□ 1.26
SMAD3-206ENST00000558739 SYNJ1O43426 1573 aa22.91■■□□□ 1.26
SMAD3-206ENST00000558739 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
SMAD3-206ENST00000558739 SOGA1O94964 1423 aa22.82■■□□□ 1.24
SMAD3-206ENST00000558739 CHMP7Q8WUX9 453 aaPredicted RBP22.81■■□□□ 1.24
SMAD3-206ENST00000558739 MAGI1Q96QZ7 1491 aaPredicted RBP22.8■■□□□ 1.24
SMAD3-206ENST00000558739 ERCC6L2Q5T890 1561 aa22.76■■□□□ 1.23
SMAD3-206ENST00000558739 SYNJ2O15056 1496 aa22.76■■□□□ 1.23
SMAD3-206ENST00000558739 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
SMAD3-206ENST00000558739 WDR97A6NE52 1622 aa22.75■■□□□ 1.23
SMAD3-206ENST00000558739 GRIN2BQ13224 1484 aa22.72■■□□□ 1.23
SMAD3-206ENST00000558739 PBRM1Q86U86 1689 aa22.68■■□□□ 1.22
SMAD3-206ENST00000558739 KIF13AQ9H1H9 1805 aa22.66■■□□□ 1.22
SMAD3-206ENST00000558739 CUX1P39880 1505 aa22.65■■□□□ 1.22
SMAD3-206ENST00000558739 ILDR1Q86SU0 546 aaPredicted RBP22.6■■□□□ 1.21
SMAD3-206ENST00000558739 CEP170Q5SW79 1584 aa22.55■■□□□ 1.2
SMAD3-206ENST00000558739 ABCA5Q8WWZ7 1642 aa22.53■■□□□ 1.2
SMAD3-206ENST00000558739 GRIN2AQ12879 1464 aa22.48■■□□□ 1.19
SMAD3-206ENST00000558739 SHROOM2Q13796 1616 aa22.45■■□□□ 1.18
SMAD3-206ENST00000558739 KDM4FA0A1W2PPD8 638 aa22.44■■□□□ 1.18
SMAD3-206ENST00000558739 NUP160Q12769 1436 aa22.42■■□□□ 1.18
SMAD3-206ENST00000558739 ADAMTS12P58397 1594 aa22.42■■□□□ 1.18
SMAD3-206ENST00000558739 ABCA10Q8WWZ4 1543 aa22.41■■□□□ 1.18
SMAD3-206ENST00000558739 ABCC10Q5T3U5 1492 aa22.33■■□□□ 1.16
SMAD3-206ENST00000558739 FAM69CQ0P6D2 419 aa22.32■■□□□ 1.16
SMAD3-206ENST00000558739 DIP2BQ9P265 1576 aa22.32■■□□□ 1.16
SMAD3-206ENST00000558739 KDM6BO15054 1643 aa22.31■■□□□ 1.16
SMAD3-206ENST00000558739 PRG4Q92954 1404 aaPredicted RBP22.26■■□□□ 1.15
SMAD3-206ENST00000558739 TSPOAP1O95153 1857 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms