RNA–Protein interactions for RNA: ENST00000558735.1

CASC4-205, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 427 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-205ENST00000558735 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
CASC4-205ENST00000558735 ABCC9O60706 1549 aa26.21■■□□□ 1.79
CASC4-205ENST00000558735 CCDC180Q9P1Z9 1646 aa25.94■■□□□ 1.74
CASC4-205ENST00000558735 DNAJC5BQ9UF47 199 aa24.97■■□□□ 1.59
CASC4-205ENST00000558735 RB1CC1Q8TDY2 1594 aa24.85■■□□□ 1.57
CASC4-205ENST00000558735 NACADO15069 1562 aa24.63■■□□□ 1.53
CASC4-205ENST00000558735 PABPN1Q86U42 306 aaKnown RBP eCLIP24.34■■□□□ 1.49
CASC4-205ENST00000558735 MYO15BQ96JP2 1530 aa24.27■■□□□ 1.48
CASC4-205ENST00000558735 DCAF8L2P0C7V8 631 aa24.25■■□□□ 1.47
CASC4-205ENST00000558735 UNC13AQ9UPW8 1703 aa24.21■■□□□ 1.47
CASC4-205ENST00000558735 BICRAQ9NZM4 1560 aa24.16■■□□□ 1.46
CASC4-205ENST00000558735 SHROOM4Q9ULL8 1493 aa23.9■■□□□ 1.42
CASC4-205ENST00000558735 DCAF1Q9Y4B6 1507 aa23.8■■□□□ 1.4
CASC4-205ENST00000558735 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
CASC4-205ENST00000558735 CECR2Q9BXF3 1484 aa23.69■■□□□ 1.38
CASC4-205ENST00000558735 CC2D2AQ9P2K1 1620 aa23.68■■□□□ 1.38
CASC4-205ENST00000558735 EIF4G1Q04637 1599 aaKnown RBP23.57■■□□□ 1.36
CASC4-205ENST00000558735 SCRIBQ14160 1630 aa23.51■■□□□ 1.35
CASC4-205ENST00000558735 DNAJC5Q9H3Z4 198 aa23.24■■□□□ 1.31
CASC4-205ENST00000558735 CUX2O14529 1486 aa22.84■■□□□ 1.25
CASC4-205ENST00000558735 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
CASC4-205ENST00000558735 ERCC6Q03468 1493 aa22.66■■□□□ 1.22
CASC4-205ENST00000558735 ATAD2BQ9ULI0 1458 aa22.61■■□□□ 1.21
CASC4-205ENST00000558735 HMGXB3Q12766 1538 aa22.55■■□□□ 1.2
CASC4-205ENST00000558735 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
CASC4-205ENST00000558735 SMARCA4P51532 1647 aa22.46■■□□□ 1.19
CASC4-205ENST00000558735 NESP48681 1621 aa22.42■■□□□ 1.18
CASC4-205ENST00000558735 BAZ1BQ9UIG0 1483 aaKnown RBP22.34■■□□□ 1.17
CASC4-205ENST00000558735 PEG3Q9GZU2 1588 aa22.33■■□□□ 1.16
CASC4-205ENST00000558735 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.16
CASC4-205ENST00000558735 THOC2Q8NI27 1593 aaKnown RBP22.29■■□□□ 1.16
CASC4-205ENST00000558735 LAMC3Q9Y6N6 1575 aa22.27■■□□□ 1.16
CASC4-205ENST00000558735 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
CASC4-205ENST00000558735 MROH2BQ7Z745 1585 aa22.11■■□□□ 1.13
CASC4-205ENST00000558735 KIF21AQ7Z4S6 1674 aa22.08■■□□□ 1.13
CASC4-205ENST00000558735 CADPSQ9ULU8 1353 aa22.04■■□□□ 1.12
CASC4-205ENST00000558735 MRC2Q9UBG0 1479 aa21.97■■□□□ 1.11
CASC4-205ENST00000558735 WDR62O43379 1518 aa21.95■■□□□ 1.1
CASC4-205ENST00000558735 TRIM41Q8WV44 630 aa21.91■■□□□ 1.1
CASC4-205ENST00000558735 CEP164Q9UPV0 1460 aa21.79■■□□□ 1.08
CASC4-205ENST00000558735 WIZO95785 1651 aa21.77■■□□□ 1.08
CASC4-205ENST00000558735 FANCD2Q9BXW9 1451 aa21.75■■□□□ 1.07
CASC4-205ENST00000558735 CFTRP13569 1480 aa21.72■■□□□ 1.07
CASC4-205ENST00000558735 OSCARQ8IYS5 282 aa21.71■■□□□ 1.07
CASC4-205ENST00000558735 RSF1Q96T23 1441 aaPredicted RBP21.69■■□□□ 1.06
CASC4-205ENST00000558735 URB2Q14146 1524 aaKnown RBP21.6■■□□□ 1.05
CASC4-205ENST00000558735 TOP2AP11388 1531 aaKnown RBP21.54■■□□□ 1.04
CASC4-205ENST00000558735 RIMBP3CA6NJZ7 1639 aa21.41■■□□□ 1.02
CASC4-205ENST00000558735 RIMBP3BA6NNM3 1639 aa21.41■■□□□ 1.02
CASC4-205ENST00000558735 RIMBP3Q9UFD9 1639 aa21.41■■□□□ 1.02
CASC4-205ENST00000558735 IFT140Q96RY7 1462 aa21.41■■□□□ 1.02
CASC4-205ENST00000558735 ZNF608Q9ULD9 1512 aaPredicted RBP21.37■■□□□ 1.01
CASC4-205ENST00000558735 PRDM2Q13029 1718 aa21.37■■□□□ 1.01
CASC4-205ENST00000558735 ARHGEF11O15085 1522 aa21.33■■□□□ 1
CASC4-205ENST00000558735 CCDC88BA6NC98 1476 aa21.32■■□□□ 1
CASC4-205ENST00000558735 TOPBP1Q92547 1522 aa21.29■■□□□ 1
CASC4-205ENST00000558735 ABCC8Q09428 1581 aa21.28■■□□□ 1
CASC4-205ENST00000558735 EIF4G3O43432 1585 aaKnown RBP21.21■□□□□ 0.99
CASC4-205ENST00000558735 DNMBPQ6XZF7 1577 aa21.19■□□□□ 0.98
CASC4-205ENST00000558735 CYB5RLQ6IPT4 315 aa21.16■□□□□ 0.98
CASC4-205ENST00000558735 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
CASC4-205ENST00000558735 AQRO60306 1485 aaKnown RBP eCLIP21.13■□□□□ 0.978e-8■■■■■ 39.5
CASC4-205ENST00000558735 ARAP1Q96P48 1450 aa21.11■□□□□ 0.97
CASC4-205ENST00000558735 CHD1O14646 1710 aa21.07■□□□□ 0.96
CASC4-205ENST00000558735 POLA1P09884 1462 aaPredicted RBP21.06■□□□□ 0.96
CASC4-205ENST00000558735 TRHP20396 242 aaPredicted RBP21■□□□□ 0.95
CASC4-205ENST00000558735 FBLN2P98095 1184 aa20.99■□□□□ 0.95
CASC4-205ENST00000558735 WDR97A6NE52 1622 aa20.96■□□□□ 0.95
CASC4-205ENST00000558735 SOGA1O94964 1423 aa20.95■□□□□ 0.95
CASC4-205ENST00000558735 RAD54L2Q9Y4B4 1467 aa20.94■□□□□ 0.94
CASC4-205ENST00000558735 TDRD9Q8NDG6 1382 aaKnown RBP20.94■□□□□ 0.94
CASC4-205ENST00000558735 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
CASC4-205ENST00000558735 SNAPC4Q5SXM2 1469 aa20.89■□□□□ 0.94
CASC4-205ENST00000558735 MAGI1Q96QZ7 1491 aaPredicted RBP20.88■□□□□ 0.93
CASC4-205ENST00000558735 SUPT5HO00267 1087 aaKnown RBP20.88■□□□□ 0.93
CASC4-205ENST00000558735 FGD5Q6ZNL6 1462 aa20.85■□□□□ 0.93
CASC4-205ENST00000558735 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
CASC4-205ENST00000558735 CHMP7Q8WUX9 453 aaPredicted RBP20.84■□□□□ 0.93
CASC4-205ENST00000558735 GRIN2BQ13224 1484 aa20.83■□□□□ 0.93
CASC4-205ENST00000558735 SYNJ2O15056 1496 aa20.81■□□□□ 0.92
CASC4-205ENST00000558735 CUX1P39880 1505 aa20.79■□□□□ 0.92
CASC4-205ENST00000558735 GAPVD1Q14C86 1478 aa20.7■□□□□ 0.9
CASC4-205ENST00000558735 ABCA10Q8WWZ4 1543 aa20.65■□□□□ 0.9
CASC4-205ENST00000558735 AEBP2Q6ZN18 517 aaPredicted RBP20.65■□□□□ 0.9
CASC4-205ENST00000558735 PBRM1Q86U86 1689 aa20.63■□□□□ 0.89
CASC4-205ENST00000558735 ABCA5Q8WWZ7 1642 aa20.61■□□□□ 0.89
CASC4-205ENST00000558735 GRIN2AQ12879 1464 aa20.55■□□□□ 0.88
CASC4-205ENST00000558735 NUP160Q12769 1436 aa20.54■□□□□ 0.88
CASC4-205ENST00000558735 ERCC6L2Q5T890 1561 aa20.51■□□□□ 0.87
CASC4-205ENST00000558735 WRNQ14191 1432 aaPredicted RBP eCLIP20.49■□□□□ 0.87
CASC4-205ENST00000558735 CEP170Q5SW79 1584 aa20.49■□□□□ 0.87
CASC4-205ENST00000558735 ADAMTS12P58397 1594 aa20.47■□□□□ 0.87
CASC4-205ENST00000558735 SHROOM2Q13796 1616 aa20.46■□□□□ 0.87
CASC4-205ENST00000558735 FHAD1B1AJZ9 1412 aa20.44■□□□□ 0.86
CASC4-205ENST00000558735 ERICH3Q5RHP9 1530 aa20.38■□□□□ 0.85
CASC4-205ENST00000558735 TOP2BQ02880 1626 aa20.37■□□□□ 0.85
CASC4-205ENST00000558735 BIVM-ERCC5R4GMW8 1640 aa20.36■□□□□ 0.85
CASC4-205ENST00000558735 PRG4Q92954 1404 aaPredicted RBP20.32■□□□□ 0.84
CASC4-205ENST00000558735 KIF13AQ9H1H9 1805 aa20.31■□□□□ 0.84
CASC4-205ENST00000558735 JPH4Q96JJ6 628 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms