RNA–Protein interactions for RNA: ENST00000558705.1

PKNOX2-209, Transcript of PBX/knotted 1 homeobox 2, humanhuman

TSL 4

Gene PKNOX2, Length 554 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2-209ENST00000558705 NISCHQ9Y2I1 1504 aa34.59■■■■□ 3.13
PKNOX2-209ENST00000558705 CCDC180Q9P1Z9 1646 aa30.98■■■□□ 2.55
PKNOX2-209ENST00000558705 ABCC9O60706 1549 aa30.95■■■□□ 2.55
PKNOX2-209ENST00000558705 RB1CC1Q8TDY2 1594 aa29.43■■■□□ 2.3
PKNOX2-209ENST00000558705 NACADO15069 1562 aa29.24■■■□□ 2.27
PKNOX2-209ENST00000558705 DCAF8L2P0C7V8 631 aa29.12■■■□□ 2.25
PKNOX2-209ENST00000558705 DNAJC5BQ9UF47 199 aa29■■■□□ 2.23
PKNOX2-209ENST00000558705 UNC13AQ9UPW8 1703 aa28.89■■■□□ 2.21
PKNOX2-209ENST00000558705 MYO15BQ96JP2 1530 aa28.84■■■□□ 2.21
PKNOX2-209ENST00000558705 PABPN1Q86U42 306 aaKnown RBP eCLIP28.83■■■□□ 2.21
PKNOX2-209ENST00000558705 ZCCHC6Q5VYS8 1495 aaKnown RBP28.7■■■□□ 2.18
PKNOX2-209ENST00000558705 BICRAQ9NZM4 1560 aa28.67■■■□□ 2.18
PKNOX2-209ENST00000558705 DCAF1Q9Y4B6 1507 aa28.53■■■□□ 2.16
PKNOX2-209ENST00000558705 SCRIBQ14160 1630 aa28.3■■■□□ 2.12
PKNOX2-209ENST00000558705 SHROOM4Q9ULL8 1493 aa28.14■■■□□ 2.09
PKNOX2-209ENST00000558705 CC2D2AQ9P2K1 1620 aa27.96■■■□□ 2.07
PKNOX2-209ENST00000558705 EIF4G1Q04637 1599 aaKnown RBP27.9■■■□□ 2.06
PKNOX2-209ENST00000558705 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.05
PKNOX2-209ENST00000558705 NCAPD3P42695 1498 aa27.01■■□□□ 1.91
PKNOX2-209ENST00000558705 SMARCA4P51532 1647 aa26.98■■□□□ 1.91
PKNOX2-209ENST00000558705 ATAD2BQ9ULI0 1458 aa26.97■■□□□ 1.91
PKNOX2-209ENST00000558705 SMARCA2P51531 1590 aa26.85■■□□□ 1.89
PKNOX2-209ENST00000558705 HMGXB3Q12766 1538 aa26.82■■□□□ 1.88
PKNOX2-209ENST00000558705 BAZ1AQ9NRL2 1556 aaPredicted RBP26.8■■□□□ 1.88
PKNOX2-209ENST00000558705 MROH2BQ7Z745 1585 aa26.7■■□□□ 1.86
PKNOX2-209ENST00000558705 PEG3Q9GZU2 1588 aa26.69■■□□□ 1.86
PKNOX2-209ENST00000558705 BAZ1BQ9UIG0 1483 aaKnown RBP26.68■■□□□ 1.86
PKNOX2-209ENST00000558705 NESP48681 1621 aa26.65■■□□□ 1.86
PKNOX2-209ENST00000558705 ERCC6Q03468 1493 aa26.64■■□□□ 1.86
PKNOX2-209ENST00000558705 CUX2O14529 1486 aa26.55■■□□□ 1.84
PKNOX2-209ENST00000558705 DNAJC5Q9H3Z4 198 aa26.46■■□□□ 1.83
PKNOX2-209ENST00000558705 WIZO95785 1651 aa26.39■■□□□ 1.82
PKNOX2-209ENST00000558705 LAMC3Q9Y6N6 1575 aa26.37■■□□□ 1.81
PKNOX2-209ENST00000558705 THOC2Q8NI27 1593 aaKnown RBP26.34■■□□□ 1.81
PKNOX2-209ENST00000558705 KIF21AQ7Z4S6 1674 aa26.31■■□□□ 1.8
PKNOX2-209ENST00000558705 CADPSQ9ULU8 1353 aa26.19■■□□□ 1.78
PKNOX2-209ENST00000558705 PDS5BQ9NTI5 1447 aa26.18■■□□□ 1.78
PKNOX2-209ENST00000558705 RSF1Q96T23 1441 aaPredicted RBP26.15■■□□□ 1.78
PKNOX2-209ENST00000558705 TOP2AP11388 1531 aaKnown RBP26.02■■□□□ 1.76
PKNOX2-209ENST00000558705 MRC2Q9UBG0 1479 aa26.01■■□□□ 1.75
PKNOX2-209ENST00000558705 WDR62O43379 1518 aa25.96■■□□□ 1.75
PKNOX2-209ENST00000558705 CFTRP13569 1480 aa25.92■■□□□ 1.74
PKNOX2-209ENST00000558705 FANCD2Q9BXW9 1451 aa25.91■■□□□ 1.74
PKNOX2-209ENST00000558705 CEP164Q9UPV0 1460 aa25.91■■□□□ 1.74
PKNOX2-209ENST00000558705 URB2Q14146 1524 aaKnown RBP25.74■■□□□ 1.71
PKNOX2-209ENST00000558705 CCDC88BA6NC98 1476 aa25.73■■□□□ 1.71
PKNOX2-209ENST00000558705 PRDM2Q13029 1718 aa25.7■■□□□ 1.7
PKNOX2-209ENST00000558705 TOPBP1Q92547 1522 aa25.45■■□□□ 1.66
PKNOX2-209ENST00000558705 ZNF608Q9ULD9 1512 aaPredicted RBP25.42■■□□□ 1.66
PKNOX2-209ENST00000558705 IFT140Q96RY7 1462 aa25.38■■□□□ 1.65
PKNOX2-209ENST00000558705 TRIM41Q8WV44 630 aa25.37■■□□□ 1.65
PKNOX2-209ENST00000558705 DNMBPQ6XZF7 1577 aa25.35■■□□□ 1.65
PKNOX2-209ENST00000558705 OSCARQ8IYS5 282 aa25.34■■□□□ 1.65
PKNOX2-209ENST00000558705 ABCC8Q09428 1581 aa25.3■■□□□ 1.64
PKNOX2-209ENST00000558705 EIF4G3O43432 1585 aaKnown RBP25.27■■□□□ 1.64
PKNOX2-209ENST00000558705 TARBP1Q13395 1621 aaKnown RBP25.24■■□□□ 1.63
PKNOX2-209ENST00000558705 POLA1P09884 1462 aaPredicted RBP25.2■■□□□ 1.62
PKNOX2-209ENST00000558705 AQRO60306 1485 aaKnown RBP eCLIP25.18■■□□□ 1.62
PKNOX2-209ENST00000558705 RAD54L2Q9Y4B4 1467 aa25.14■■□□□ 1.61
PKNOX2-209ENST00000558705 RIMBP3CA6NJZ7 1639 aa25.1■■□□□ 1.61
PKNOX2-209ENST00000558705 RIMBP3BA6NNM3 1639 aa25.1■■□□□ 1.61
PKNOX2-209ENST00000558705 RIMBP3Q9UFD9 1639 aa25.1■■□□□ 1.61
PKNOX2-209ENST00000558705 CHD1O14646 1710 aa25.08■■□□□ 1.61
PKNOX2-209ENST00000558705 CUX1P39880 1505 aa25.07■■□□□ 1.6
PKNOX2-209ENST00000558705 FGD5Q6ZNL6 1462 aa25.06■■□□□ 1.6
PKNOX2-209ENST00000558705 SOGA1O94964 1423 aa25.04■■□□□ 1.6
PKNOX2-209ENST00000558705 SUPT5HO00267 1087 aaKnown RBP25.04■■□□□ 1.6
PKNOX2-209ENST00000558705 TDRD9Q8NDG6 1382 aaKnown RBP25.03■■□□□ 1.6
PKNOX2-209ENST00000558705 ARHGEF11O15085 1522 aa25.01■■□□□ 1.59
PKNOX2-209ENST00000558705 FBLN2P98095 1184 aa24.93■■□□□ 1.58
PKNOX2-209ENST00000558705 SNAPC4Q5SXM2 1469 aa24.91■■□□□ 1.58
PKNOX2-209ENST00000558705 WDR97A6NE52 1622 aa24.9■■□□□ 1.58
PKNOX2-209ENST00000558705 GRIN2BQ13224 1484 aa24.81■■□□□ 1.56
PKNOX2-209ENST00000558705 MAGI1Q96QZ7 1491 aaPredicted RBP24.8■■□□□ 1.56
PKNOX2-209ENST00000558705 ARAP1Q96P48 1450 aa24.79■■□□□ 1.56
PKNOX2-209ENST00000558705 PBRM1Q86U86 1689 aa24.78■■□□□ 1.56
PKNOX2-209ENST00000558705 CYB5RLQ6IPT4 315 aa24.78■■□□□ 1.56
PKNOX2-209ENST00000558705 CLASP1Q7Z460 1538 aa24.77■■□□□ 1.56
PKNOX2-209ENST00000558705 GAPVD1Q14C86 1478 aa24.75■■□□□ 1.55
PKNOX2-209ENST00000558705 ABCA10Q8WWZ4 1543 aa24.75■■□□□ 1.55
PKNOX2-209ENST00000558705 ABCA5Q8WWZ7 1642 aa24.75■■□□□ 1.55
PKNOX2-209ENST00000558705 CHMP7Q8WUX9 453 aaPredicted RBP24.73■■□□□ 1.55
PKNOX2-209ENST00000558705 SYNJ2O15056 1496 aa24.72■■□□□ 1.55
PKNOX2-209ENST00000558705 SYNJ1O43426 1573 aa24.71■■□□□ 1.55
PKNOX2-209ENST00000558705 BIVM-ERCC5R4GMW8 1640 aa24.68■■□□□ 1.54
PKNOX2-209ENST00000558705 TOP2BQ02880 1626 aa24.66■■□□□ 1.54
PKNOX2-209ENST00000558705 WRNQ14191 1432 aaPredicted RBP eCLIP24.63■■□□□ 1.53
PKNOX2-209ENST00000558705 ADAMTS12P58397 1594 aa24.54■■□□□ 1.52
PKNOX2-209ENST00000558705 GRIN2AQ12879 1464 aa24.52■■□□□ 1.52
PKNOX2-209ENST00000558705 CEP170Q5SW79 1584 aa24.48■■□□□ 1.51
PKNOX2-209ENST00000558705 ERCC6L2Q5T890 1561 aa24.46■■□□□ 1.51
PKNOX2-209ENST00000558705 TRHP20396 242 aaPredicted RBP24.45■■□□□ 1.5
PKNOX2-209ENST00000558705 NUP160Q12769 1436 aa24.44■■□□□ 1.5
PKNOX2-209ENST00000558705 FHAD1B1AJZ9 1412 aa24.43■■□□□ 1.5
PKNOX2-209ENST00000558705 ERICH3Q5RHP9 1530 aa24.42■■□□□ 1.5
PKNOX2-209ENST00000558705 SHROOM2Q13796 1616 aa24.34■■□□□ 1.49
PKNOX2-209ENST00000558705 RUSC2Q8N2Y8 1516 aa24.2■■□□□ 1.47
PKNOX2-209ENST00000558705 PRG4Q92954 1404 aaPredicted RBP24.18■■□□□ 1.46
PKNOX2-209ENST00000558705 IGF1RP08069 1367 aa24.16■■□□□ 1.46
PKNOX2-209ENST00000558705 JPH4Q96JJ6 628 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms