RNA–Protein interactions for RNA: ENST00000558685.1

SHF-204, Transcript of Src homology 2 domain containing F, humanhuman

TSL 4

Gene SHF, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHF-204ENST00000558685 NISCHQ9Y2I1 1504 aa28.82■■■□□ 2.2
SHF-204ENST00000558685 CCDC180Q9P1Z9 1646 aa25.58■■□□□ 1.69
SHF-204ENST00000558685 ABCC9O60706 1549 aa25.22■■□□□ 1.63
SHF-204ENST00000558685 RB1CC1Q8TDY2 1594 aa24.14■■□□□ 1.45
SHF-204ENST00000558685 DCAF8L2P0C7V8 631 aa24.12■■□□□ 1.45
SHF-204ENST00000558685 NACADO15069 1562 aa24.11■■□□□ 1.45
SHF-204ENST00000558685 ZCCHC6Q5VYS8 1495 aaKnown RBP23.98■■□□□ 1.43
SHF-204ENST00000558685 MYO15BQ96JP2 1530 aa23.95■■□□□ 1.43
SHF-204ENST00000558685 DCAF1Q9Y4B6 1507 aa23.81■■□□□ 1.4
SHF-204ENST00000558685 UNC13AQ9UPW8 1703 aa23.62■■□□□ 1.37
SHF-204ENST00000558685 PABPN1Q86U42 306 aaKnown RBP eCLIP23.6■■□□□ 1.37
SHF-204ENST00000558685 BICRAQ9NZM4 1560 aa23.51■■□□□ 1.35
SHF-204ENST00000558685 SCRIBQ14160 1630 aa23.38■■□□□ 1.33
SHF-204ENST00000558685 DNAJC5BQ9UF47 199 aa23.36■■□□□ 1.33
SHF-204ENST00000558685 SHROOM4Q9ULL8 1493 aa23.14■■□□□ 1.29
SHF-204ENST00000558685 EIF4G1Q04637 1599 aaKnown RBP22.84■■□□□ 1.25
SHF-204ENST00000558685 CC2D2AQ9P2K1 1620 aa22.78■■□□□ 1.24
SHF-204ENST00000558685 CECR2Q9BXF3 1484 aa22.66■■□□□ 1.22
SHF-204ENST00000558685 SMARCA4P51532 1647 aa22.35■■□□□ 1.17
SHF-204ENST00000558685 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
SHF-204ENST00000558685 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
SHF-204ENST00000558685 BAZ1AQ9NRL2 1556 aaPredicted RBP22.29■■□□□ 1.16
SHF-204ENST00000558685 MROH2BQ7Z745 1585 aa22.24■■□□□ 1.15
SHF-204ENST00000558685 SMARCA2P51531 1590 aa22.2■■□□□ 1.14
SHF-204ENST00000558685 PEG3Q9GZU2 1588 aa22.15■■□□□ 1.14
SHF-204ENST00000558685 HMGXB3Q12766 1538 aa22.13■■□□□ 1.13
SHF-204ENST00000558685 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
SHF-204ENST00000558685 RSF1Q96T23 1441 aaPredicted RBP21.96■■□□□ 1.11
SHF-204ENST00000558685 WIZO95785 1651 aa21.95■■□□□ 1.1
SHF-204ENST00000558685 NESP48681 1621 aa21.82■■□□□ 1.08
SHF-204ENST00000558685 TOP2AP11388 1531 aaKnown RBP21.7■■□□□ 1.06
SHF-204ENST00000558685 ERCC6Q03468 1493 aa21.68■■□□□ 1.06
SHF-204ENST00000558685 LAMC3Q9Y6N6 1575 aa21.66■■□□□ 1.06
SHF-204ENST00000558685 CADPSQ9ULU8 1353 aa21.64■■□□□ 1.06
SHF-204ENST00000558685 PDS5BQ9NTI5 1447 aa21.54■■□□□ 1.04
SHF-204ENST00000558685 CCDC88BA6NC98 1476 aa21.5■■□□□ 1.03
SHF-204ENST00000558685 CUX2O14529 1486 aa21.5■■□□□ 1.03
SHF-204ENST00000558685 CFTRP13569 1480 aa21.49■■□□□ 1.03
SHF-204ENST00000558685 KIF21AQ7Z4S6 1674 aa21.48■■□□□ 1.03
SHF-204ENST00000558685 THOC2Q8NI27 1593 aaKnown RBP21.45■■□□□ 1.02
SHF-204ENST00000558685 FANCD2Q9BXW9 1451 aa21.38■■□□□ 1.01
SHF-204ENST00000558685 MRC2Q9UBG0 1479 aa21.33■■□□□ 1.01
SHF-204ENST00000558685 CEP164Q9UPV0 1460 aa21.32■■□□□ 1
SHF-204ENST00000558685 SUPT5HO00267 1087 aaKnown RBP21.3■■□□□ 1
SHF-204ENST00000558685 WDR62O43379 1518 aa21.27■■□□□ 1
SHF-204ENST00000558685 URB2Q14146 1524 aaKnown RBP21.2■□□□□ 0.98
SHF-204ENST00000558685 PRDM2Q13029 1718 aa21.2■□□□□ 0.98
SHF-204ENST00000558685 DNAJC5Q9H3Z4 198 aa21.04■□□□□ 0.96
SHF-204ENST00000558685 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
SHF-204ENST00000558685 ABCC8Q09428 1581 aa20.96■□□□□ 0.95
SHF-204ENST00000558685 DNMBPQ6XZF7 1577 aa20.96■□□□□ 0.95
SHF-204ENST00000558685 IFT140Q96RY7 1462 aa20.9■□□□□ 0.94
SHF-204ENST00000558685 ZNF608Q9ULD9 1512 aaPredicted RBP20.88■□□□□ 0.93
SHF-204ENST00000558685 CUX1P39880 1505 aa20.85■□□□□ 0.93
SHF-204ENST00000558685 POLA1P09884 1462 aaPredicted RBP20.85■□□□□ 0.93
SHF-204ENST00000558685 TARBP1Q13395 1621 aaKnown RBP20.81■□□□□ 0.92
SHF-204ENST00000558685 RAD54L2Q9Y4B4 1467 aa20.79■□□□□ 0.92
SHF-204ENST00000558685 FGD5Q6ZNL6 1462 aa20.78■□□□□ 0.92
SHF-204ENST00000558685 SOGA1O94964 1423 aa20.76■□□□□ 0.91
SHF-204ENST00000558685 AQRO60306 1485 aaKnown RBP eCLIP20.75■□□□□ 0.913e-9■■■■■ 36.3
SHF-204ENST00000558685 EIF4G3O43432 1585 aaKnown RBP20.72■□□□□ 0.91
SHF-204ENST00000558685 TDRD9Q8NDG6 1382 aaKnown RBP20.69■□□□□ 0.9
SHF-204ENST00000558685 WRNQ14191 1432 aaPredicted RBP eCLIP20.66■□□□□ 0.9
SHF-204ENST00000558685 OSCARQ8IYS5 282 aa20.63■□□□□ 0.89
SHF-204ENST00000558685 SYNJ1O43426 1573 aa20.63■□□□□ 0.89
SHF-204ENST00000558685 TOP2BQ02880 1626 aa20.6■□□□□ 0.89
SHF-204ENST00000558685 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
SHF-204ENST00000558685 ABCA10Q8WWZ4 1543 aa20.58■□□□□ 0.88
SHF-204ENST00000558685 WDR97A6NE52 1622 aa20.57■□□□□ 0.88
SHF-204ENST00000558685 GRIN2BQ13224 1484 aa20.5■□□□□ 0.87
SHF-204ENST00000558685 GAPVD1Q14C86 1478 aa20.5■□□□□ 0.87
SHF-204ENST00000558685 SNAPC4Q5SXM2 1469 aa20.5■□□□□ 0.87
SHF-204ENST00000558685 ABCA5Q8WWZ7 1642 aa20.48■□□□□ 0.87
SHF-204ENST00000558685 FBLN2P98095 1184 aa20.47■□□□□ 0.87
SHF-204ENST00000558685 CHD1O14646 1710 aa20.46■□□□□ 0.87
SHF-204ENST00000558685 MAGI1Q96QZ7 1491 aaPredicted RBP20.45■□□□□ 0.86
SHF-204ENST00000558685 PBRM1Q86U86 1689 aa20.41■□□□□ 0.86
SHF-204ENST00000558685 CHMP7Q8WUX9 453 aaPredicted RBP20.39■□□□□ 0.85
SHF-204ENST00000558685 SYNJ2O15056 1496 aa20.38■□□□□ 0.85
SHF-204ENST00000558685 ARHGEF11O15085 1522 aa20.29■□□□□ 0.84
SHF-204ENST00000558685 ERICH3Q5RHP9 1530 aa20.29■□□□□ 0.84
SHF-204ENST00000558685 RIMBP3CA6NJZ7 1639 aa20.29■□□□□ 0.84
SHF-204ENST00000558685 RIMBP3BA6NNM3 1639 aa20.29■□□□□ 0.84
SHF-204ENST00000558685 RIMBP3Q9UFD9 1639 aa20.29■□□□□ 0.84
SHF-204ENST00000558685 ADAMTS12P58397 1594 aa20.29■□□□□ 0.84
SHF-204ENST00000558685 CLASP1Q7Z460 1538 aa20.28■□□□□ 0.84
SHF-204ENST00000558685 TRIM41Q8WV44 630 aa20.27■□□□□ 0.84
SHF-204ENST00000558685 FHAD1B1AJZ9 1412 aa20.27■□□□□ 0.83
SHF-204ENST00000558685 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
SHF-204ENST00000558685 IGF1RP08069 1367 aa20.22■□□□□ 0.83
SHF-204ENST00000558685 KIF27Q86VH2 1401 aa20.21■□□□□ 0.83
SHF-204ENST00000558685 NUP160Q12769 1436 aa20.19■□□□□ 0.82
SHF-204ENST00000558685 CEP170Q5SW79 1584 aa20.17■□□□□ 0.82
SHF-204ENST00000558685 ARAP1Q96P48 1450 aa20.14■□□□□ 0.81
SHF-204ENST00000558685 CYB5RLQ6IPT4 315 aa20.13■□□□□ 0.81
SHF-204ENST00000558685 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
SHF-204ENST00000558685 CARMIL1Q5VZK9 1371 aa20.06■□□□□ 0.8
SHF-204ENST00000558685 ERCC6L2Q5T890 1561 aa20.04■□□□□ 0.8
SHF-204ENST00000558685 CUL7Q14999 1698 aa20.04■□□□□ 0.8
SHF-204ENST00000558685 SHROOM2Q13796 1616 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms