RNA–Protein interactions for RNA: ENST00000558609.1

CSHL1-208, Transcript of chorionic somatomammotropin hormone like 1, humanhuman

TSL 3

Gene CSHL1, Length 1,081 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSHL1-208ENST00000558609 NISCHQ9Y2I1 1504 aa38.22■■■■□ 3.71
CSHL1-208ENST00000558609 CCDC180Q9P1Z9 1646 aa34.12■■■■□ 3.05
CSHL1-208ENST00000558609 ABCC9O60706 1549 aa33.9■■■■□ 3.02
CSHL1-208ENST00000558609 DNAJC5BQ9UF47 199 aa32.31■■■□□ 2.76
CSHL1-208ENST00000558609 RB1CC1Q8TDY2 1594 aa32.29■■■□□ 2.76
CSHL1-208ENST00000558609 NACADO15069 1562 aa32.19■■■□□ 2.74
CSHL1-208ENST00000558609 DCAF8L2P0C7V8 631 aa32.07■■■□□ 2.72
CSHL1-208ENST00000558609 MYO15BQ96JP2 1530 aa31.9■■■□□ 2.7
CSHL1-208ENST00000558609 ZCCHC6Q5VYS8 1495 aaKnown RBP31.76■■■□□ 2.67
CSHL1-208ENST00000558609 DCAF1Q9Y4B6 1507 aa31.64■■■□□ 2.66
CSHL1-208ENST00000558609 PABPN1Q86U42 306 aaKnown RBP eCLIP31.58■■■□□ 2.65
CSHL1-208ENST00000558609 UNC13AQ9UPW8 1703 aa31.52■■■□□ 2.64
CSHL1-208ENST00000558609 BICRAQ9NZM4 1560 aa31.33■■■□□ 2.61
CSHL1-208ENST00000558609 SCRIBQ14160 1630 aa31.07■■■□□ 2.56
CSHL1-208ENST00000558609 SHROOM4Q9ULL8 1493 aa30.99■■■□□ 2.55
CSHL1-208ENST00000558609 CECR2Q9BXF3 1484 aa30.56■■■□□ 2.48
CSHL1-208ENST00000558609 CC2D2AQ9P2K1 1620 aa30.54■■■□□ 2.48
CSHL1-208ENST00000558609 EIF4G1Q04637 1599 aaKnown RBP30.52■■■□□ 2.48
CSHL1-208ENST00000558609 DNAJC5Q9H3Z4 198 aa29.88■■■□□ 2.37
CSHL1-208ENST00000558609 NCAPD3P42695 1498 aa29.73■■■□□ 2.35
CSHL1-208ENST00000558609 SMARCA4P51532 1647 aa29.71■■■□□ 2.35
CSHL1-208ENST00000558609 ATAD2BQ9ULI0 1458 aa29.67■■■□□ 2.34
CSHL1-208ENST00000558609 BAZ1AQ9NRL2 1556 aaPredicted RBP29.64■■■□□ 2.34
CSHL1-208ENST00000558609 SMARCA2P51531 1590 aa29.6■■■□□ 2.33
CSHL1-208ENST00000558609 HMGXB3Q12766 1538 aa29.51■■■□□ 2.32
CSHL1-208ENST00000558609 PEG3Q9GZU2 1588 aa29.46■■■□□ 2.31
CSHL1-208ENST00000558609 MROH2BQ7Z745 1585 aa29.44■■■□□ 2.3
CSHL1-208ENST00000558609 BAZ1BQ9UIG0 1483 aaKnown RBP29.38■■■□□ 2.29
CSHL1-208ENST00000558609 CUX2O14529 1486 aa29.31■■■□□ 2.28
CSHL1-208ENST00000558609 ERCC6Q03468 1493 aa29.23■■■□□ 2.27
CSHL1-208ENST00000558609 WIZO95785 1651 aa29.09■■■□□ 2.25
CSHL1-208ENST00000558609 NESP48681 1621 aa29.07■■■□□ 2.24
CSHL1-208ENST00000558609 RSF1Q96T23 1441 aaPredicted RBP29■■■□□ 2.23
CSHL1-208ENST00000558609 LAMC3Q9Y6N6 1575 aa28.96■■■□□ 2.23
CSHL1-208ENST00000558609 CADPSQ9ULU8 1353 aa28.84■■■□□ 2.21
CSHL1-208ENST00000558609 PDS5BQ9NTI5 1447 aa28.8■■■□□ 2.2
CSHL1-208ENST00000558609 TOP2AP11388 1531 aaKnown RBP28.77■■■□□ 2.2
CSHL1-208ENST00000558609 THOC2Q8NI27 1593 aaKnown RBP28.71■■■□□ 2.19
CSHL1-208ENST00000558609 KIF21AQ7Z4S6 1674 aa28.69■■■□□ 2.18
CSHL1-208ENST00000558609 CFTRP13569 1480 aa28.59■■■□□ 2.17
CSHL1-208ENST00000558609 MRC2Q9UBG0 1479 aa28.5■■■□□ 2.15
CSHL1-208ENST00000558609 FANCD2Q9BXW9 1451 aa28.48■■■□□ 2.15
CSHL1-208ENST00000558609 CEP164Q9UPV0 1460 aa28.46■■■□□ 2.15
CSHL1-208ENST00000558609 CCDC88BA6NC98 1476 aa28.46■■■□□ 2.15
CSHL1-208ENST00000558609 WDR62O43379 1518 aa28.42■■■□□ 2.14
CSHL1-208ENST00000558609 TRIM41Q8WV44 630 aa28.38■■■□□ 2.13
CSHL1-208ENST00000558609 PRDM2Q13029 1718 aa28.28■■■□□ 2.12
CSHL1-208ENST00000558609 URB2Q14146 1524 aaKnown RBP28.22■■■□□ 2.11
CSHL1-208ENST00000558609 SUPT5HO00267 1087 aaKnown RBP27.99■■■□□ 2.07
CSHL1-208ENST00000558609 ABCC8Q09428 1581 aa27.99■■■□□ 2.07
CSHL1-208ENST00000558609 TOPBP1Q92547 1522 aa27.98■■■□□ 2.07
CSHL1-208ENST00000558609 OSCARQ8IYS5 282 aa27.98■■■□□ 2.07
CSHL1-208ENST00000558609 DNMBPQ6XZF7 1577 aa27.91■■■□□ 2.06
CSHL1-208ENST00000558609 IFT140Q96RY7 1462 aa27.9■■■□□ 2.06
CSHL1-208ENST00000558609 ZNF608Q9ULD9 1512 aaPredicted RBP27.79■■■□□ 2.04
CSHL1-208ENST00000558609 POLA1P09884 1462 aaPredicted RBP27.72■■■□□ 2.03
CSHL1-208ENST00000558609 TARBP1Q13395 1621 aaKnown RBP27.7■■■□□ 2.03
CSHL1-208ENST00000558609 CUX1P39880 1505 aa27.64■■■□□ 2.02
CSHL1-208ENST00000558609 EIF4G3O43432 1585 aaKnown RBP27.64■■■□□ 2.01
CSHL1-208ENST00000558609 SOGA1O94964 1423 aa27.62■■■□□ 2.01
CSHL1-208ENST00000558609 RAD54L2Q9Y4B4 1467 aa27.61■■■□□ 2.01
CSHL1-208ENST00000558609 AQRO60306 1485 aaKnown RBP eCLIP27.6■■■□□ 2.01
CSHL1-208ENST00000558609 FGD5Q6ZNL6 1462 aa27.6■■■□□ 2.01
CSHL1-208ENST00000558609 RIMBP3CA6NJZ7 1639 aa27.58■■■□□ 2.01
CSHL1-208ENST00000558609 RIMBP3BA6NNM3 1639 aa27.58■■■□□ 2.01
CSHL1-208ENST00000558609 RIMBP3Q9UFD9 1639 aa27.58■■■□□ 2.01
CSHL1-208ENST00000558609 TDRD9Q8NDG6 1382 aaKnown RBP27.5■■□□□ 1.99
CSHL1-208ENST00000558609 ARHGEF11O15085 1522 aa27.49■■□□□ 1.99
CSHL1-208ENST00000558609 WDR97A6NE52 1622 aa27.47■■□□□ 1.99
CSHL1-208ENST00000558609 CYB5RLQ6IPT4 315 aa27.39■■□□□ 1.98
CSHL1-208ENST00000558609 CHD1O14646 1710 aa27.35■■□□□ 1.97
CSHL1-208ENST00000558609 WRNQ14191 1432 aaPredicted RBP eCLIP27.34■■□□□ 1.97
CSHL1-208ENST00000558609 ABCA10Q8WWZ4 1543 aa27.34■■□□□ 1.97
CSHL1-208ENST00000558609 GRIN2BQ13224 1484 aa27.33■■□□□ 1.97
CSHL1-208ENST00000558609 FBLN2P98095 1184 aa27.33■■□□□ 1.97
CSHL1-208ENST00000558609 SNAPC4Q5SXM2 1469 aa27.32■■□□□ 1.96
CSHL1-208ENST00000558609 TOP2BQ02880 1626 aa27.31■■□□□ 1.96
CSHL1-208ENST00000558609 MAGI1Q96QZ7 1491 aaPredicted RBP27.3■■□□□ 1.96
CSHL1-208ENST00000558609 BIVM-ERCC5R4GMW8 1640 aa27.3■■□□□ 1.96
CSHL1-208ENST00000558609 GAPVD1Q14C86 1478 aa27.28■■□□□ 1.96
CSHL1-208ENST00000558609 SYNJ1O43426 1573 aa27.27■■□□□ 1.96
CSHL1-208ENST00000558609 ABCA5Q8WWZ7 1642 aa27.23■■□□□ 1.95
CSHL1-208ENST00000558609 ARAP1Q96P48 1450 aa27.23■■□□□ 1.95
CSHL1-208ENST00000558609 CHMP7Q8WUX9 453 aaPredicted RBP27.22■■□□□ 1.95
CSHL1-208ENST00000558609 PBRM1Q86U86 1689 aa27.2■■□□□ 1.94
CSHL1-208ENST00000558609 SYNJ2O15056 1496 aa27.19■■□□□ 1.94
CSHL1-208ENST00000558609 TRHP20396 242 aaPredicted RBP27.16■■□□□ 1.94
CSHL1-208ENST00000558609 CLASP1Q7Z460 1538 aa27.09■■□□□ 1.93
CSHL1-208ENST00000558609 ERICH3Q5RHP9 1530 aa27■■□□□ 1.91
CSHL1-208ENST00000558609 ADAMTS12P58397 1594 aa26.98■■□□□ 1.91
CSHL1-208ENST00000558609 GRIN2AQ12879 1464 aa26.97■■□□□ 1.91
CSHL1-208ENST00000558609 FHAD1B1AJZ9 1412 aa26.97■■□□□ 1.91
CSHL1-208ENST00000558609 NUP160Q12769 1436 aa26.88■■□□□ 1.89
CSHL1-208ENST00000558609 CEP170Q5SW79 1584 aa26.84■■□□□ 1.89
CSHL1-208ENST00000558609 KIF27Q86VH2 1401 aa26.81■■□□□ 1.88
CSHL1-208ENST00000558609 IGF1RP08069 1367 aa26.77■■□□□ 1.88
CSHL1-208ENST00000558609 SHROOM2Q13796 1616 aa26.7■■□□□ 1.86
CSHL1-208ENST00000558609 ERCC6L2Q5T890 1561 aa26.67■■□□□ 1.86
CSHL1-208ENST00000558609 CUL7Q14999 1698 aa26.66■■□□□ 1.86
CSHL1-208ENST00000558609 JPH4Q96JJ6 628 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms