RNA–Protein interactions for RNA: ENST00000558324.1

HERC1-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 828 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-202ENST00000558324 NISCHQ9Y2I1 1504 aa29.46■■■□□ 2.31
HERC1-202ENST00000558324 CCDC180Q9P1Z9 1646 aa26.31■■□□□ 1.8
HERC1-202ENST00000558324 ABCC9O60706 1549 aa26.14■■□□□ 1.78
HERC1-202ENST00000558324 RB1CC1Q8TDY2 1594 aa24.94■■□□□ 1.58
HERC1-202ENST00000558324 DCAF8L2P0C7V8 631 aa24.83■■□□□ 1.57
HERC1-202ENST00000558324 NACADO15069 1562 aa24.81■■□□□ 1.56
HERC1-202ENST00000558324 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
HERC1-202ENST00000558324 ZCCHC6Q5VYS8 1495 aaKnown RBP24.48■■□□□ 1.51
HERC1-202ENST00000558324 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.49
HERC1-202ENST00000558324 UNC13AQ9UPW8 1703 aa24.37■■□□□ 1.49
HERC1-202ENST00000558324 DCAF1Q9Y4B6 1507 aa24.3■■□□□ 1.48
HERC1-202ENST00000558324 DNAJC5BQ9UF47 199 aa24.26■■□□□ 1.47
HERC1-202ENST00000558324 BICRAQ9NZM4 1560 aa24.2■■□□□ 1.47
HERC1-202ENST00000558324 SCRIBQ14160 1630 aa24.08■■□□□ 1.45
HERC1-202ENST00000558324 SHROOM4Q9ULL8 1493 aa23.86■■□□□ 1.41
HERC1-202ENST00000558324 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
HERC1-202ENST00000558324 CC2D2AQ9P2K1 1620 aa23.59■■□□□ 1.37
HERC1-202ENST00000558324 CECR2Q9BXF3 1484 aa23.49■■□□□ 1.35
HERC1-202ENST00000558324 SMARCA4P51532 1647 aa22.94■■□□□ 1.26
HERC1-202ENST00000558324 NCAPD3P42695 1498 aa22.9■■□□□ 1.26
HERC1-202ENST00000558324 ATAD2BQ9ULI0 1458 aa22.89■■□□□ 1.25
HERC1-202ENST00000558324 BAZ1AQ9NRL2 1556 aaPredicted RBP22.85■■□□□ 1.25
HERC1-202ENST00000558324 SMARCA2P51531 1590 aa22.84■■□□□ 1.25
HERC1-202ENST00000558324 HMGXB3Q12766 1538 aa22.77■■□□□ 1.24
HERC1-202ENST00000558324 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
HERC1-202ENST00000558324 BAZ1BQ9UIG0 1483 aaKnown RBP22.71■■□□□ 1.23
HERC1-202ENST00000558324 PEG3Q9GZU2 1588 aa22.67■■□□□ 1.22
HERC1-202ENST00000558324 ERCC6Q03468 1493 aa22.55■■□□□ 1.2
HERC1-202ENST00000558324 NESP48681 1621 aa22.53■■□□□ 1.2
HERC1-202ENST00000558324 WIZO95785 1651 aa22.48■■□□□ 1.19
HERC1-202ENST00000558324 CUX2O14529 1486 aa22.36■■□□□ 1.17
HERC1-202ENST00000558324 LAMC3Q9Y6N6 1575 aa22.36■■□□□ 1.17
HERC1-202ENST00000558324 RSF1Q96T23 1441 aaPredicted RBP22.33■■□□□ 1.17
HERC1-202ENST00000558324 KIF21AQ7Z4S6 1674 aa22.23■■□□□ 1.15
HERC1-202ENST00000558324 CADPSQ9ULU8 1353 aa22.23■■□□□ 1.15
HERC1-202ENST00000558324 PDS5BQ9NTI5 1447 aa22.23■■□□□ 1.15
HERC1-202ENST00000558324 THOC2Q8NI27 1593 aaKnown RBP22.22■■□□□ 1.15
HERC1-202ENST00000558324 TOP2AP11388 1531 aaKnown RBP22.2■■□□□ 1.14
HERC1-202ENST00000558324 DNAJC5Q9H3Z4 198 aa22.05■■□□□ 1.12
HERC1-202ENST00000558324 MRC2Q9UBG0 1479 aa22.04■■□□□ 1.12
HERC1-202ENST00000558324 CFTRP13569 1480 aa22.03■■□□□ 1.12
HERC1-202ENST00000558324 FANCD2Q9BXW9 1451 aa22.01■■□□□ 1.11
HERC1-202ENST00000558324 CEP164Q9UPV0 1460 aa22.01■■□□□ 1.11
HERC1-202ENST00000558324 WDR62O43379 1518 aa21.96■■□□□ 1.11
HERC1-202ENST00000558324 CCDC88BA6NC98 1476 aa21.94■■□□□ 1.1
HERC1-202ENST00000558324 PRDM2Q13029 1718 aa21.82■■□□□ 1.08
HERC1-202ENST00000558324 URB2Q14146 1524 aaKnown RBP21.81■■□□□ 1.08
HERC1-202ENST00000558324 TOPBP1Q92547 1522 aa21.61■■□□□ 1.05
HERC1-202ENST00000558324 SUPT5HO00267 1087 aaKnown RBP21.6■■□□□ 1.05
HERC1-202ENST00000558324 DNMBPQ6XZF7 1577 aa21.55■■□□□ 1.04
HERC1-202ENST00000558324 IFT140Q96RY7 1462 aa21.54■■□□□ 1.04
HERC1-202ENST00000558324 ABCC8Q09428 1581 aa21.53■■□□□ 1.04
HERC1-202ENST00000558324 ZNF608Q9ULD9 1512 aaPredicted RBP21.51■■□□□ 1.03
HERC1-202ENST00000558324 EIF4G3O43432 1585 aaKnown RBP21.41■■□□□ 1.02
HERC1-202ENST00000558324 POLA1P09884 1462 aaPredicted RBP21.41■■□□□ 1.02
HERC1-202ENST00000558324 TARBP1Q13395 1621 aaKnown RBP21.39■■□□□ 1.01
HERC1-202ENST00000558324 OSCARQ8IYS5 282 aa21.38■■□□□ 1.01
HERC1-202ENST00000558324 RAD54L2Q9Y4B4 1467 aa21.35■■□□□ 1.01
HERC1-202ENST00000558324 CUX1P39880 1505 aa21.34■■□□□ 1.01
HERC1-202ENST00000558324 AQRO60306 1485 aaKnown RBP eCLIP21.34■■□□□ 1.013e-7■■■■■ 28.8
HERC1-202ENST00000558324 FGD5Q6ZNL6 1462 aa21.33■■□□□ 1.01
HERC1-202ENST00000558324 SOGA1O94964 1423 aa21.31■■□□□ 1
HERC1-202ENST00000558324 TRIM41Q8WV44 630 aa21.29■■□□□ 1
HERC1-202ENST00000558324 TDRD9Q8NDG6 1382 aaKnown RBP21.26■□□□□ 0.99
HERC1-202ENST00000558324 CHD1O14646 1710 aa21.2■□□□□ 0.98
HERC1-202ENST00000558324 FBLN2P98095 1184 aa21.19■□□□□ 0.98
HERC1-202ENST00000558324 WDR97A6NE52 1622 aa21.15■□□□□ 0.98
HERC1-202ENST00000558324 SNAPC4Q5SXM2 1469 aa21.15■□□□□ 0.98
HERC1-202ENST00000558324 RIMBP3CA6NJZ7 1639 aa21.11■□□□□ 0.97
HERC1-202ENST00000558324 RIMBP3BA6NNM3 1639 aa21.11■□□□□ 0.97
HERC1-202ENST00000558324 RIMBP3Q9UFD9 1639 aa21.11■□□□□ 0.97
HERC1-202ENST00000558324 GRIN2BQ13224 1484 aa21.09■□□□□ 0.97
HERC1-202ENST00000558324 WRNQ14191 1432 aaPredicted RBP eCLIP21.09■□□□□ 0.97
HERC1-202ENST00000558324 ARHGEF11O15085 1522 aa21.08■□□□□ 0.96
HERC1-202ENST00000558324 SYNJ1O43426 1573 aa21.07■□□□□ 0.96
HERC1-202ENST00000558324 ABCA10Q8WWZ4 1543 aa21.07■□□□□ 0.96
HERC1-202ENST00000558324 GAPVD1Q14C86 1478 aa21.07■□□□□ 0.96
HERC1-202ENST00000558324 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
HERC1-202ENST00000558324 PBRM1Q86U86 1689 aa21.05■□□□□ 0.96
HERC1-202ENST00000558324 TOP2BQ02880 1626 aa21.04■□□□□ 0.96
HERC1-202ENST00000558324 BIVM-ERCC5R4GMW8 1640 aa21.04■□□□□ 0.96
HERC1-202ENST00000558324 CHMP7Q8WUX9 453 aaPredicted RBP21.03■□□□□ 0.96
HERC1-202ENST00000558324 ABCA5Q8WWZ7 1642 aa21.03■□□□□ 0.96
HERC1-202ENST00000558324 SYNJ2O15056 1496 aa21■□□□□ 0.95
HERC1-202ENST00000558324 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
HERC1-202ENST00000558324 CYB5RLQ6IPT4 315 aa20.91■□□□□ 0.94
HERC1-202ENST00000558324 ARAP1Q96P48 1450 aa20.89■□□□□ 0.94
HERC1-202ENST00000558324 ADAMTS12P58397 1594 aa20.87■□□□□ 0.93
HERC1-202ENST00000558324 GRIN2AQ12879 1464 aa20.83■□□□□ 0.93
HERC1-202ENST00000558324 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
HERC1-202ENST00000558324 FHAD1B1AJZ9 1412 aa20.79■□□□□ 0.92
HERC1-202ENST00000558324 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
HERC1-202ENST00000558324 NUP160Q12769 1436 aa20.73■□□□□ 0.91
HERC1-202ENST00000558324 ERCC6L2Q5T890 1561 aa20.67■□□□□ 0.9
HERC1-202ENST00000558324 KIF27Q86VH2 1401 aa20.65■□□□□ 0.9
HERC1-202ENST00000558324 TRHP20396 242 aaPredicted RBP20.63■□□□□ 0.89
HERC1-202ENST00000558324 SHROOM2Q13796 1616 aa20.61■□□□□ 0.89
HERC1-202ENST00000558324 IGF1RP08069 1367 aa20.59■□□□□ 0.89
HERC1-202ENST00000558324 CUL7Q14999 1698 aa20.57■□□□□ 0.88
HERC1-202ENST00000558324 RUSC2Q8N2Y8 1516 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms