RNA–Protein interactions for RNA: ENST00000558298.5

RTF1-205, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 5

Gene RTF1, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-205ENST00000558298 NISCHQ9Y2I1 1504 aa19.13■□□□□ 0.65
RTF1-205ENST00000558298 CCDC180Q9P1Z9 1646 aa17.13■□□□□ 0.33
RTF1-205ENST00000558298 ABCC9O60706 1549 aa16.7■□□□□ 0.26
RTF1-205ENST00000558298 RB1CC1Q8TDY2 1594 aa16.09■□□□□ 0.17
RTF1-205ENST00000558298 NACADO15069 1562 aa16.07■□□□□ 0.16
RTF1-205ENST00000558298 MYO15BQ96JP2 1530 aa16.03■□□□□ 0.16
RTF1-205ENST00000558298 ZCCHC6Q5VYS8 1495 aaKnown RBP15.97■□□□□ 0.15
RTF1-205ENST00000558298 DCAF1Q9Y4B6 1507 aa15.95■□□□□ 0.14
RTF1-205ENST00000558298 UNC13AQ9UPW8 1703 aa15.82■□□□□ 0.12
RTF1-205ENST00000558298 DCAF8L2P0C7V8 631 aa15.7■□□□□ 0.1
RTF1-205ENST00000558298 BICRAQ9NZM4 1560 aa15.69■□□□□ 0.1
RTF1-205ENST00000558298 SHROOM4Q9ULL8 1493 aa15.53■□□□□ 0.08
RTF1-205ENST00000558298 PABPN1Q86U42 306 aaKnown RBP eCLIP15.51■□□□□ 0.07
RTF1-205ENST00000558298 SCRIBQ14160 1630 aa15.5■□□□□ 0.07
RTF1-205ENST00000558298 DNAJC5BQ9UF47 199 aa15.44■□□□□ 0.06
RTF1-205ENST00000558298 EIF4G1Q04637 1599 aaKnown RBP15.23■□□□□ 0.03
RTF1-205ENST00000558298 CC2D2AQ9P2K1 1620 aa15.17■□□□□ 0.02
RTF1-205ENST00000558298 CECR2Q9BXF3 1484 aa15.04■□□□□ -0
RTF1-205ENST00000558298 SMARCA4P51532 1647 aa14.88□□□□□ -0.03
RTF1-205ENST00000558298 BAZ1AQ9NRL2 1556 aaPredicted RBP14.83□□□□□ -0.04
RTF1-205ENST00000558298 NCAPD3P42695 1498 aa14.82□□□□□ -0.04
RTF1-205ENST00000558298 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
RTF1-205ENST00000558298 ATAD2BQ9ULI0 1458 aa14.8□□□□□ -0.04
RTF1-205ENST00000558298 HMGXB3Q12766 1538 aa14.78□□□□□ -0.04
RTF1-205ENST00000558298 SMARCA2P51531 1590 aa14.77□□□□□ -0.04
RTF1-205ENST00000558298 MROH2BQ7Z745 1585 aa14.73□□□□□ -0.05
RTF1-205ENST00000558298 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
RTF1-205ENST00000558298 WIZO95785 1651 aa14.56□□□□□ -0.08
RTF1-205ENST00000558298 RSF1Q96T23 1441 aaPredicted RBP14.5□□□□□ -0.09
RTF1-205ENST00000558298 NESP48681 1621 aa14.46□□□□□ -0.09
RTF1-205ENST00000558298 LAMC3Q9Y6N6 1575 aa14.45□□□□□ -0.1
RTF1-205ENST00000558298 TOP2AP11388 1531 aaKnown RBP14.42□□□□□ -0.1
RTF1-205ENST00000558298 THOC2Q8NI27 1593 aaKnown RBP14.36□□□□□ -0.11
RTF1-205ENST00000558298 CUX2O14529 1486 aa14.36□□□□□ -0.11
RTF1-205ENST00000558298 ERCC6Q03468 1493 aa14.36□□□□□ -0.11
RTF1-205ENST00000558298 KIF21AQ7Z4S6 1674 aa14.34□□□□□ -0.11
RTF1-205ENST00000558298 CADPSQ9ULU8 1353 aa14.33□□□□□ -0.12
RTF1-205ENST00000558298 CFTRP13569 1480 aa14.28□□□□□ -0.12
RTF1-205ENST00000558298 PDS5BQ9NTI5 1447 aa14.27□□□□□ -0.12
RTF1-205ENST00000558298 PRDM2Q13029 1718 aa14.23□□□□□ -0.13
RTF1-205ENST00000558298 WDR62O43379 1518 aa14.2□□□□□ -0.14
RTF1-205ENST00000558298 CCDC88BA6NC98 1476 aa14.2□□□□□ -0.14
RTF1-205ENST00000558298 MRC2Q9UBG0 1479 aa14.18□□□□□ -0.14
RTF1-205ENST00000558298 FANCD2Q9BXW9 1451 aa14.17□□□□□ -0.14
RTF1-205ENST00000558298 CEP164Q9UPV0 1460 aa14.16□□□□□ -0.14
RTF1-205ENST00000558298 URB2Q14146 1524 aaKnown RBP14.09□□□□□ -0.15
RTF1-205ENST00000558298 TOPBP1Q92547 1522 aa13.96□□□□□ -0.17
RTF1-205ENST00000558298 DNAJC5Q9H3Z4 198 aa13.96□□□□□ -0.17
RTF1-205ENST00000558298 DNMBPQ6XZF7 1577 aa13.96□□□□□ -0.18
RTF1-205ENST00000558298 ABCC8Q09428 1581 aa13.92□□□□□ -0.18
RTF1-205ENST00000558298 SUPT5HO00267 1087 aaKnown RBP13.91□□□□□ -0.18
RTF1-205ENST00000558298 IFT140Q96RY7 1462 aa13.88□□□□□ -0.19
RTF1-205ENST00000558298 TARBP1Q13395 1621 aaKnown RBP13.87□□□□□ -0.19
RTF1-205ENST00000558298 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
RTF1-205ENST00000558298 ZNF608Q9ULD9 1512 aaPredicted RBP13.84□□□□□ -0.19
RTF1-205ENST00000558298 CUX1P39880 1505 aa13.83□□□□□ -0.2
RTF1-205ENST00000558298 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.2
RTF1-205ENST00000558298 WDR97A6NE52 1622 aa13.79□□□□□ -0.2
RTF1-205ENST00000558298 FGD5Q6ZNL6 1462 aa13.77□□□□□ -0.21
RTF1-205ENST00000558298 BIVM-ERCC5R4GMW8 1640 aa13.75□□□□□ -0.21
RTF1-205ENST00000558298 RAD54L2Q9Y4B4 1467 aa13.74□□□□□ -0.21
RTF1-205ENST00000558298 TOP2BQ02880 1626 aa13.72□□□□□ -0.21
RTF1-205ENST00000558298 AQRO60306 1485 aaKnown RBP eCLIP13.7□□□□□ -0.222e-8■□□□□ 9.6
RTF1-205ENST00000558298 SOGA1O94964 1423 aa13.7□□□□□ -0.22
RTF1-205ENST00000558298 SYNJ1O43426 1573 aa13.69□□□□□ -0.22
RTF1-205ENST00000558298 ABCA5Q8WWZ7 1642 aa13.68□□□□□ -0.22
RTF1-205ENST00000558298 WRNQ14191 1432 aaPredicted RBP eCLIP13.67□□□□□ -0.22
RTF1-205ENST00000558298 ABCA10Q8WWZ4 1543 aa13.67□□□□□ -0.22
RTF1-205ENST00000558298 CHD1O14646 1710 aa13.66□□□□□ -0.22
RTF1-205ENST00000558298 PBRM1Q86U86 1689 aa13.63□□□□□ -0.23
RTF1-205ENST00000558298 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
RTF1-205ENST00000558298 MAGI1Q96QZ7 1491 aaPredicted RBP13.61□□□□□ -0.23
RTF1-205ENST00000558298 OSCARQ8IYS5 282 aa13.6□□□□□ -0.23
RTF1-205ENST00000558298 GRIN2BQ13224 1484 aa13.6□□□□□ -0.23
RTF1-205ENST00000558298 SNAPC4Q5SXM2 1469 aa13.6□□□□□ -0.23
RTF1-205ENST00000558298 GAPVD1Q14C86 1478 aa13.57□□□□□ -0.24
RTF1-205ENST00000558298 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
RTF1-205ENST00000558298 CLASP1Q7Z460 1538 aa13.54□□□□□ -0.24
RTF1-205ENST00000558298 RIMBP3CA6NJZ7 1639 aa13.54□□□□□ -0.24
RTF1-205ENST00000558298 RIMBP3BA6NNM3 1639 aa13.54□□□□□ -0.24
RTF1-205ENST00000558298 RIMBP3Q9UFD9 1639 aa13.54□□□□□ -0.24
RTF1-205ENST00000558298 ARHGEF11O15085 1522 aa13.52□□□□□ -0.25
RTF1-205ENST00000558298 ADAMTS12P58397 1594 aa13.52□□□□□ -0.25
RTF1-205ENST00000558298 ERICH3Q5RHP9 1530 aa13.5□□□□□ -0.25
RTF1-205ENST00000558298 GRIN2AQ12879 1464 aa13.45□□□□□ -0.26
RTF1-205ENST00000558298 NUP160Q12769 1436 aa13.43□□□□□ -0.26
RTF1-205ENST00000558298 FHAD1B1AJZ9 1412 aa13.42□□□□□ -0.26
RTF1-205ENST00000558298 CEP170Q5SW79 1584 aa13.41□□□□□ -0.26
RTF1-205ENST00000558298 ARAP1Q96P48 1450 aa13.41□□□□□ -0.26
RTF1-205ENST00000558298 CUL7Q14999 1698 aa13.4□□□□□ -0.26
RTF1-205ENST00000558298 KIF27Q86VH2 1401 aa13.39□□□□□ -0.27
RTF1-205ENST00000558298 SHROOM2Q13796 1616 aa13.39□□□□□ -0.27
RTF1-205ENST00000558298 FBLN2P98095 1184 aa13.39□□□□□ -0.27
RTF1-205ENST00000558298 CHMP7Q8WUX9 453 aaPredicted RBP13.39□□□□□ -0.27
RTF1-205ENST00000558298 RUSC2Q8N2Y8 1516 aa13.34□□□□□ -0.27
RTF1-205ENST00000558298 IGF1RP08069 1367 aa13.32□□□□□ -0.28
RTF1-205ENST00000558298 TRIM41Q8WV44 630 aa13.31□□□□□ -0.28
RTF1-205ENST00000558298 ERCC6L2Q5T890 1561 aa13.31□□□□□ -0.28
RTF1-205ENST00000558298 EEA1Q15075 1411 aa13.27□□□□□ -0.29
RTF1-205ENST00000558298 CYB5RLQ6IPT4 315 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 169.8 ms