RNA–Protein interactions for RNA: ENST00000558294.1

SHF-203, Transcript of Src homology 2 domain containing F, humanhuman

APPRIS ALT2 TSL 2

Gene SHF, Length 604 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHF-203ENST00000558294 NISCHQ9Y2I1 1504 aa27.06■■□□□ 1.92
SHF-203ENST00000558294 ABCC9O60706 1549 aa24.43■■□□□ 1.5
SHF-203ENST00000558294 CCDC180Q9P1Z9 1646 aa24.35■■□□□ 1.49
SHF-203ENST00000558294 RB1CC1Q8TDY2 1594 aa23.22■■□□□ 1.31
SHF-203ENST00000558294 NACADO15069 1562 aa23.04■■□□□ 1.28
SHF-203ENST00000558294 DNAJC5BQ9UF47 199 aa23.02■■□□□ 1.28
SHF-203ENST00000558294 DCAF8L2P0C7V8 631 aa22.82■■□□□ 1.24
SHF-203ENST00000558294 UNC13AQ9UPW8 1703 aa22.71■■□□□ 1.23
SHF-203ENST00000558294 PABPN1Q86U42 306 aaKnown RBP eCLIP22.71■■□□□ 1.23
SHF-203ENST00000558294 MYO15BQ96JP2 1530 aa22.7■■□□□ 1.22
SHF-203ENST00000558294 BICRAQ9NZM4 1560 aa22.57■■□□□ 1.2
SHF-203ENST00000558294 ZCCHC6Q5VYS8 1495 aaKnown RBP22.41■■□□□ 1.18
SHF-203ENST00000558294 DCAF1Q9Y4B6 1507 aa22.36■■□□□ 1.17
SHF-203ENST00000558294 SHROOM4Q9ULL8 1493 aa22.25■■□□□ 1.15
SHF-203ENST00000558294 SCRIBQ14160 1630 aa22.17■■□□□ 1.14
SHF-203ENST00000558294 CC2D2AQ9P2K1 1620 aa22.08■■□□□ 1.13
SHF-203ENST00000558294 CECR2Q9BXF3 1484 aa22.03■■□□□ 1.12
SHF-203ENST00000558294 EIF4G1Q04637 1599 aaKnown RBP22.01■■□□□ 1.11
SHF-203ENST00000558294 NCAPD3P42695 1498 aa21.26■□□□□ 0.99
SHF-203ENST00000558294 DNAJC5Q9H3Z4 198 aa21.21■□□□□ 0.99
SHF-203ENST00000558294 ATAD2BQ9ULI0 1458 aa21.19■□□□□ 0.98
SHF-203ENST00000558294 SMARCA4P51532 1647 aa21.15■□□□□ 0.98
SHF-203ENST00000558294 CUX2O14529 1486 aa21.12■□□□□ 0.97
SHF-203ENST00000558294 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
SHF-203ENST00000558294 HMGXB3Q12766 1538 aa21.11■□□□□ 0.97
SHF-203ENST00000558294 ERCC6Q03468 1493 aa21.08■□□□□ 0.97
SHF-203ENST00000558294 BAZ1AQ9NRL2 1556 aaPredicted RBP21.01■□□□□ 0.95
SHF-203ENST00000558294 NESP48681 1621 aa20.96■□□□□ 0.95
SHF-203ENST00000558294 BAZ1BQ9UIG0 1483 aaKnown RBP20.96■□□□□ 0.95
SHF-203ENST00000558294 PEG3Q9GZU2 1588 aa20.95■□□□□ 0.94
SHF-203ENST00000558294 MROH2BQ7Z745 1585 aa20.85■□□□□ 0.93
SHF-203ENST00000558294 LAMC3Q9Y6N6 1575 aa20.81■□□□□ 0.92
SHF-203ENST00000558294 THOC2Q8NI27 1593 aaKnown RBP20.8■□□□□ 0.92
SHF-203ENST00000558294 KIF21AQ7Z4S6 1674 aa20.7■□□□□ 0.91
SHF-203ENST00000558294 PDS5BQ9NTI5 1447 aa20.67■□□□□ 0.9
SHF-203ENST00000558294 CADPSQ9ULU8 1353 aa20.6■□□□□ 0.89
SHF-203ENST00000558294 WIZO95785 1651 aa20.6■□□□□ 0.89
SHF-203ENST00000558294 MRC2Q9UBG0 1479 aa20.51■□□□□ 0.87
SHF-203ENST00000558294 WDR62O43379 1518 aa20.48■□□□□ 0.87
SHF-203ENST00000558294 CEP164Q9UPV0 1460 aa20.4■□□□□ 0.86
SHF-203ENST00000558294 RSF1Q96T23 1441 aaPredicted RBP20.37■□□□□ 0.85
SHF-203ENST00000558294 CFTRP13569 1480 aa20.37■□□□□ 0.85
SHF-203ENST00000558294 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
SHF-203ENST00000558294 TOP2AP11388 1531 aaKnown RBP20.33■□□□□ 0.85
SHF-203ENST00000558294 URB2Q14146 1524 aaKnown RBP20.22■□□□□ 0.83
SHF-203ENST00000558294 TRIM41Q8WV44 630 aa20.21■□□□□ 0.83
SHF-203ENST00000558294 PRDM2Q13029 1718 aa20.16■□□□□ 0.82
SHF-203ENST00000558294 OSCARQ8IYS5 282 aa20.1■□□□□ 0.81
SHF-203ENST00000558294 CCDC88BA6NC98 1476 aa20.09■□□□□ 0.81
SHF-203ENST00000558294 IFT140Q96RY7 1462 aa20■□□□□ 0.79
SHF-203ENST00000558294 ZNF608Q9ULD9 1512 aaPredicted RBP19.99■□□□□ 0.79
SHF-203ENST00000558294 TOPBP1Q92547 1522 aa19.98■□□□□ 0.79
SHF-203ENST00000558294 ABCC8Q09428 1581 aa19.92■□□□□ 0.78
SHF-203ENST00000558294 DNMBPQ6XZF7 1577 aa19.91■□□□□ 0.78
SHF-203ENST00000558294 RIMBP3CA6NJZ7 1639 aa19.89■□□□□ 0.77
SHF-203ENST00000558294 RIMBP3BA6NNM3 1639 aa19.89■□□□□ 0.77
SHF-203ENST00000558294 RIMBP3Q9UFD9 1639 aa19.89■□□□□ 0.77
SHF-203ENST00000558294 EIF4G3O43432 1585 aaKnown RBP19.88■□□□□ 0.77
SHF-203ENST00000558294 TARBP1Q13395 1621 aaKnown RBP19.83■□□□□ 0.76
SHF-203ENST00000558294 ARHGEF11O15085 1522 aa19.81■□□□□ 0.76
SHF-203ENST00000558294 AQRO60306 1485 aaKnown RBP eCLIP19.78■□□□□ 0.763e-9■■■■■ 36.3
SHF-203ENST00000558294 POLA1P09884 1462 aaPredicted RBP19.77■□□□□ 0.76
SHF-203ENST00000558294 CHD1O14646 1710 aa19.76■□□□□ 0.75
SHF-203ENST00000558294 RAD54L2Q9Y4B4 1467 aa19.69■□□□□ 0.74
SHF-203ENST00000558294 SOGA1O94964 1423 aa19.66■□□□□ 0.74
SHF-203ENST00000558294 FGD5Q6ZNL6 1462 aa19.63■□□□□ 0.73
SHF-203ENST00000558294 TDRD9Q8NDG6 1382 aaKnown RBP19.63■□□□□ 0.73
SHF-203ENST00000558294 FBLN2P98095 1184 aa19.63■□□□□ 0.73
SHF-203ENST00000558294 CYB5RLQ6IPT4 315 aa19.63■□□□□ 0.73
SHF-203ENST00000558294 WDR97A6NE52 1622 aa19.62■□□□□ 0.73
SHF-203ENST00000558294 ARAP1Q96P48 1450 aa19.61■□□□□ 0.73
SHF-203ENST00000558294 CUX1P39880 1505 aa19.61■□□□□ 0.73
SHF-203ENST00000558294 SNAPC4Q5SXM2 1469 aa19.59■□□□□ 0.73
SHF-203ENST00000558294 CLASP1Q7Z460 1538 aa19.54■□□□□ 0.72
SHF-203ENST00000558294 MAGI1Q96QZ7 1491 aaPredicted RBP19.53■□□□□ 0.72
SHF-203ENST00000558294 GRIN2BQ13224 1484 aa19.51■□□□□ 0.71
SHF-203ENST00000558294 CHMP7Q8WUX9 453 aaPredicted RBP19.49■□□□□ 0.71
SHF-203ENST00000558294 SYNJ1O43426 1573 aa19.49■□□□□ 0.71
SHF-203ENST00000558294 SYNJ2O15056 1496 aa19.47■□□□□ 0.71
SHF-203ENST00000558294 PBRM1Q86U86 1689 aa19.45■□□□□ 0.7
SHF-203ENST00000558294 GAPVD1Q14C86 1478 aa19.43■□□□□ 0.7
SHF-203ENST00000558294 TRHP20396 242 aaPredicted RBP19.43■□□□□ 0.7
SHF-203ENST00000558294 ABCA10Q8WWZ4 1543 aa19.41■□□□□ 0.7
SHF-203ENST00000558294 ABCA5Q8WWZ7 1642 aa19.4■□□□□ 0.7
SHF-203ENST00000558294 SUPT5HO00267 1087 aaKnown RBP19.33■□□□□ 0.68
SHF-203ENST00000558294 WRNQ14191 1432 aaPredicted RBP eCLIP19.28■□□□□ 0.68
SHF-203ENST00000558294 BIVM-ERCC5R4GMW8 1640 aa19.27■□□□□ 0.68
SHF-203ENST00000558294 GRIN2AQ12879 1464 aa19.27■□□□□ 0.67
SHF-203ENST00000558294 ADAMTS12P58397 1594 aa19.26■□□□□ 0.67
SHF-203ENST00000558294 TOP2BQ02880 1626 aa19.25■□□□□ 0.67
SHF-203ENST00000558294 NUP160Q12769 1436 aa19.22■□□□□ 0.67
SHF-203ENST00000558294 ERCC6L2Q5T890 1561 aa19.22■□□□□ 0.67
SHF-203ENST00000558294 CEP170Q5SW79 1584 aa19.21■□□□□ 0.67
SHF-203ENST00000558294 FHAD1B1AJZ9 1412 aa19.17■□□□□ 0.66
SHF-203ENST00000558294 ERICH3Q5RHP9 1530 aa19.16■□□□□ 0.66
SHF-203ENST00000558294 SHROOM2Q13796 1616 aa19.16■□□□□ 0.66
SHF-203ENST00000558294 PRG4Q92954 1404 aaPredicted RBP19.01■□□□□ 0.63
SHF-203ENST00000558294 RUSC2Q8N2Y8 1516 aa19■□□□□ 0.63
SHF-203ENST00000558294 JPH4Q96JJ6 628 aa18.98■□□□□ 0.63
SHF-203ENST00000558294 KIF13AQ9H1H9 1805 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms