RNA–Protein interactions for RNA: ENST00000558099.1

CSHL1-207, Transcript of chorionic somatomammotropin hormone like 1, humanhuman

TSL 2

Gene CSHL1, Length 1,590 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSHL1-207ENST00000558099 NISCHQ9Y2I1 1504 aa32.51■■■□□ 2.8
CSHL1-207ENST00000558099 CCDC180Q9P1Z9 1646 aa29■■■□□ 2.23
CSHL1-207ENST00000558099 ABCC9O60706 1549 aa28.66■■■□□ 2.18
CSHL1-207ENST00000558099 RB1CC1Q8TDY2 1594 aa27.43■■□□□ 1.98
CSHL1-207ENST00000558099 NACADO15069 1562 aa27.37■■□□□ 1.97
CSHL1-207ENST00000558099 MYO15BQ96JP2 1530 aa27.21■■□□□ 1.95
CSHL1-207ENST00000558099 DCAF8L2P0C7V8 631 aa27.07■■□□□ 1.92
CSHL1-207ENST00000558099 ZCCHC6Q5VYS8 1495 aaKnown RBP27.02■■□□□ 1.92
CSHL1-207ENST00000558099 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
CSHL1-207ENST00000558099 UNC13AQ9UPW8 1703 aa26.82■■□□□ 1.88
CSHL1-207ENST00000558099 DNAJC5BQ9UF47 199 aa26.8■■□□□ 1.88
CSHL1-207ENST00000558099 BICRAQ9NZM4 1560 aa26.75■■□□□ 1.87
CSHL1-207ENST00000558099 PABPN1Q86U42 306 aaKnown RBP eCLIP26.75■■□□□ 1.87
CSHL1-207ENST00000558099 SHROOM4Q9ULL8 1493 aa26.4■■□□□ 1.82
CSHL1-207ENST00000558099 SCRIBQ14160 1630 aa26.35■■□□□ 1.81
CSHL1-207ENST00000558099 EIF4G1Q04637 1599 aaKnown RBP25.99■■□□□ 1.75
CSHL1-207ENST00000558099 CC2D2AQ9P2K1 1620 aa25.94■■□□□ 1.74
CSHL1-207ENST00000558099 CECR2Q9BXF3 1484 aa25.82■■□□□ 1.72
CSHL1-207ENST00000558099 NCAPD3P42695 1498 aa25.34■■□□□ 1.65
CSHL1-207ENST00000558099 ATAD2BQ9ULI0 1458 aa25.26■■□□□ 1.63
CSHL1-207ENST00000558099 SMARCA4P51532 1647 aa25.25■■□□□ 1.63
CSHL1-207ENST00000558099 BAZ1AQ9NRL2 1556 aaPredicted RBP25.16■■□□□ 1.62
CSHL1-207ENST00000558099 SMARCA2P51531 1590 aa25.13■■□□□ 1.61
CSHL1-207ENST00000558099 HMGXB3Q12766 1538 aa25.12■■□□□ 1.61
CSHL1-207ENST00000558099 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
CSHL1-207ENST00000558099 MROH2BQ7Z745 1585 aa25.05■■□□□ 1.6
CSHL1-207ENST00000558099 BAZ1BQ9UIG0 1483 aaKnown RBP24.93■■□□□ 1.58
CSHL1-207ENST00000558099 NESP48681 1621 aa24.76■■□□□ 1.55
CSHL1-207ENST00000558099 WIZO95785 1651 aa24.7■■□□□ 1.54
CSHL1-207ENST00000558099 RSF1Q96T23 1441 aaPredicted RBP24.66■■□□□ 1.54
CSHL1-207ENST00000558099 CUX2O14529 1486 aa24.65■■□□□ 1.54
CSHL1-207ENST00000558099 ERCC6Q03468 1493 aa24.65■■□□□ 1.54
CSHL1-207ENST00000558099 LAMC3Q9Y6N6 1575 aa24.63■■□□□ 1.53
CSHL1-207ENST00000558099 CADPSQ9ULU8 1353 aa24.53■■□□□ 1.52
CSHL1-207ENST00000558099 THOC2Q8NI27 1593 aaKnown RBP24.46■■□□□ 1.51
CSHL1-207ENST00000558099 PDS5BQ9NTI5 1447 aa24.45■■□□□ 1.51
CSHL1-207ENST00000558099 TOP2AP11388 1531 aaKnown RBP24.43■■□□□ 1.5
CSHL1-207ENST00000558099 KIF21AQ7Z4S6 1674 aa24.38■■□□□ 1.49
CSHL1-207ENST00000558099 DNAJC5Q9H3Z4 198 aa24.36■■□□□ 1.49
CSHL1-207ENST00000558099 CFTRP13569 1480 aa24.34■■□□□ 1.49
CSHL1-207ENST00000558099 MRC2Q9UBG0 1479 aa24.23■■□□□ 1.47
CSHL1-207ENST00000558099 WDR62O43379 1518 aa24.21■■□□□ 1.47
CSHL1-207ENST00000558099 FANCD2Q9BXW9 1451 aa24.2■■□□□ 1.46
CSHL1-207ENST00000558099 CCDC88BA6NC98 1476 aa24.18■■□□□ 1.46
CSHL1-207ENST00000558099 CEP164Q9UPV0 1460 aa24.16■■□□□ 1.46
CSHL1-207ENST00000558099 URB2Q14146 1524 aaKnown RBP24.03■■□□□ 1.44
CSHL1-207ENST00000558099 PRDM2Q13029 1718 aa23.97■■□□□ 1.43
CSHL1-207ENST00000558099 TOPBP1Q92547 1522 aa23.79■■□□□ 1.4
CSHL1-207ENST00000558099 ABCC8Q09428 1581 aa23.74■■□□□ 1.39
CSHL1-207ENST00000558099 IFT140Q96RY7 1462 aa23.71■■□□□ 1.39
CSHL1-207ENST00000558099 DNMBPQ6XZF7 1577 aa23.71■■□□□ 1.39
CSHL1-207ENST00000558099 ZNF608Q9ULD9 1512 aaPredicted RBP23.67■■□□□ 1.38
CSHL1-207ENST00000558099 TARBP1Q13395 1621 aaKnown RBP23.6■■□□□ 1.37
CSHL1-207ENST00000558099 POLA1P09884 1462 aaPredicted RBP23.57■■□□□ 1.36
CSHL1-207ENST00000558099 SUPT5HO00267 1087 aaKnown RBP23.57■■□□□ 1.36
CSHL1-207ENST00000558099 OSCARQ8IYS5 282 aa23.53■■□□□ 1.36
CSHL1-207ENST00000558099 CUX1P39880 1505 aa23.51■■□□□ 1.35
CSHL1-207ENST00000558099 EIF4G3O43432 1585 aaKnown RBP23.49■■□□□ 1.35
CSHL1-207ENST00000558099 AQRO60306 1485 aaKnown RBP eCLIP23.47■■□□□ 1.35
CSHL1-207ENST00000558099 RAD54L2Q9Y4B4 1467 aa23.47■■□□□ 1.35
CSHL1-207ENST00000558099 SOGA1O94964 1423 aa23.45■■□□□ 1.34
CSHL1-207ENST00000558099 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
CSHL1-207ENST00000558099 TDRD9Q8NDG6 1382 aaKnown RBP23.36■■□□□ 1.33
CSHL1-207ENST00000558099 WDR97A6NE52 1622 aa23.36■■□□□ 1.33
CSHL1-207ENST00000558099 ABCA10Q8WWZ4 1543 aa23.24■■□□□ 1.31
CSHL1-207ENST00000558099 CHD1O14646 1710 aa23.22■■□□□ 1.31
CSHL1-207ENST00000558099 GRIN2BQ13224 1484 aa23.21■■□□□ 1.31
CSHL1-207ENST00000558099 SNAPC4Q5SXM2 1469 aa23.21■■□□□ 1.31
CSHL1-207ENST00000558099 MAGI1Q96QZ7 1491 aaPredicted RBP23.19■■□□□ 1.3
CSHL1-207ENST00000558099 TOP2BQ02880 1626 aa23.19■■□□□ 1.3
CSHL1-207ENST00000558099 TRIM41Q8WV44 630 aa23.18■■□□□ 1.3
CSHL1-207ENST00000558099 RIMBP3CA6NJZ7 1639 aa23.18■■□□□ 1.3
CSHL1-207ENST00000558099 RIMBP3BA6NNM3 1639 aa23.18■■□□□ 1.3
CSHL1-207ENST00000558099 RIMBP3Q9UFD9 1639 aa23.18■■□□□ 1.3
CSHL1-207ENST00000558099 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
CSHL1-207ENST00000558099 WRNQ14191 1432 aaPredicted RBP eCLIP23.18■■□□□ 1.3
CSHL1-207ENST00000558099 ARHGEF11O15085 1522 aa23.17■■□□□ 1.3
CSHL1-207ENST00000558099 SYNJ1O43426 1573 aa23.17■■□□□ 1.3
CSHL1-207ENST00000558099 ABCA5Q8WWZ7 1642 aa23.16■■□□□ 1.3
CSHL1-207ENST00000558099 GAPVD1Q14C86 1478 aa23.16■■□□□ 1.3
CSHL1-207ENST00000558099 SYNJ2O15056 1496 aa23.11■■□□□ 1.29
CSHL1-207ENST00000558099 FBLN2P98095 1184 aa23.1■■□□□ 1.29
CSHL1-207ENST00000558099 CLASP1Q7Z460 1538 aa23.09■■□□□ 1.29
CSHL1-207ENST00000558099 PBRM1Q86U86 1689 aa23.06■■□□□ 1.28
CSHL1-207ENST00000558099 CHMP7Q8WUX9 453 aaPredicted RBP23.05■■□□□ 1.28
CSHL1-207ENST00000558099 ARAP1Q96P48 1450 aa22.99■■□□□ 1.27
CSHL1-207ENST00000558099 ADAMTS12P58397 1594 aa22.94■■□□□ 1.26
CSHL1-207ENST00000558099 ERICH3Q5RHP9 1530 aa22.92■■□□□ 1.26
CSHL1-207ENST00000558099 CYB5RLQ6IPT4 315 aa22.92■■□□□ 1.26
CSHL1-207ENST00000558099 GRIN2AQ12879 1464 aa22.92■■□□□ 1.26
CSHL1-207ENST00000558099 FHAD1B1AJZ9 1412 aa22.9■■□□□ 1.26
CSHL1-207ENST00000558099 NUP160Q12769 1436 aa22.9■■□□□ 1.26
CSHL1-207ENST00000558099 CEP170Q5SW79 1584 aa22.84■■□□□ 1.25
CSHL1-207ENST00000558099 IGF1RP08069 1367 aa22.76■■□□□ 1.23
CSHL1-207ENST00000558099 SHROOM2Q13796 1616 aa22.75■■□□□ 1.23
CSHL1-207ENST00000558099 ERCC6L2Q5T890 1561 aa22.73■■□□□ 1.23
CSHL1-207ENST00000558099 KIF27Q86VH2 1401 aa22.7■■□□□ 1.22
CSHL1-207ENST00000558099 RUSC2Q8N2Y8 1516 aa22.61■■□□□ 1.21
CSHL1-207ENST00000558099 JPH4Q96JJ6 628 aa22.6■■□□□ 1.21
CSHL1-207ENST00000558099 CUL7Q14999 1698 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms