RNA–Protein interactions for RNA: ENST00000558020.1

SNRPA1-204, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 3

Gene SNRPA1, Length 466 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-204ENST00000558020 NISCHQ9Y2I1 1504 aa33.69■■■□□ 2.98
SNRPA1-204ENST00000558020 CCDC180Q9P1Z9 1646 aa30.17■■■□□ 2.42
SNRPA1-204ENST00000558020 ABCC9O60706 1549 aa30.09■■■□□ 2.41
SNRPA1-204ENST00000558020 RB1CC1Q8TDY2 1594 aa28.73■■■□□ 2.19
SNRPA1-204ENST00000558020 NACADO15069 1562 aa28.56■■■□□ 2.16
SNRPA1-204ENST00000558020 DCAF8L2P0C7V8 631 aa28.55■■■□□ 2.16
SNRPA1-204ENST00000558020 MYO15BQ96JP2 1530 aa28.19■■■□□ 2.1
SNRPA1-204ENST00000558020 DNAJC5BQ9UF47 199 aa28.13■■■□□ 2.09
SNRPA1-204ENST00000558020 PABPN1Q86U42 306 aaKnown RBP eCLIP28.08■■■□□ 2.09
SNRPA1-204ENST00000558020 UNC13AQ9UPW8 1703 aa27.95■■■□□ 2.06
SNRPA1-204ENST00000558020 ZCCHC6Q5VYS8 1495 aaKnown RBP27.89■■■□□ 2.06
SNRPA1-204ENST00000558020 DCAF1Q9Y4B6 1507 aa27.85■■■□□ 2.05
SNRPA1-204ENST00000558020 BICRAQ9NZM4 1560 aa27.78■■■□□ 2.04
SNRPA1-204ENST00000558020 SHROOM4Q9ULL8 1493 aa27.53■■■□□ 2
SNRPA1-204ENST00000558020 SCRIBQ14160 1630 aa27.47■■□□□ 1.99
SNRPA1-204ENST00000558020 CC2D2AQ9P2K1 1620 aa27.17■■□□□ 1.94
SNRPA1-204ENST00000558020 EIF4G1Q04637 1599 aaKnown RBP27.14■■□□□ 1.94
SNRPA1-204ENST00000558020 CECR2Q9BXF3 1484 aa27.13■■□□□ 1.93
SNRPA1-204ENST00000558020 NCAPD3P42695 1498 aa26.36■■□□□ 1.81
SNRPA1-204ENST00000558020 ATAD2BQ9ULI0 1458 aa26.26■■□□□ 1.79
SNRPA1-204ENST00000558020 SMARCA2P51531 1590 aa26.24■■□□□ 1.79
SNRPA1-204ENST00000558020 SMARCA4P51532 1647 aa26.23■■□□□ 1.79
SNRPA1-204ENST00000558020 BAZ1AQ9NRL2 1556 aaPredicted RBP26.17■■□□□ 1.78
SNRPA1-204ENST00000558020 HMGXB3Q12766 1538 aa26.14■■□□□ 1.77
SNRPA1-204ENST00000558020 ERCC6Q03468 1493 aa26.04■■□□□ 1.76
SNRPA1-204ENST00000558020 BAZ1BQ9UIG0 1483 aaKnown RBP26.04■■□□□ 1.76
SNRPA1-204ENST00000558020 PEG3Q9GZU2 1588 aa25.99■■□□□ 1.75
SNRPA1-204ENST00000558020 CUX2O14529 1486 aa25.94■■□□□ 1.74
SNRPA1-204ENST00000558020 MROH2BQ7Z745 1585 aa25.92■■□□□ 1.74
SNRPA1-204ENST00000558020 DNAJC5Q9H3Z4 198 aa25.88■■□□□ 1.73
SNRPA1-204ENST00000558020 NESP48681 1621 aa25.84■■□□□ 1.73
SNRPA1-204ENST00000558020 LAMC3Q9Y6N6 1575 aa25.74■■□□□ 1.71
SNRPA1-204ENST00000558020 PDS5BQ9NTI5 1447 aa25.66■■□□□ 1.7
SNRPA1-204ENST00000558020 WIZO95785 1651 aa25.6■■□□□ 1.69
SNRPA1-204ENST00000558020 CADPSQ9ULU8 1353 aa25.59■■□□□ 1.69
SNRPA1-204ENST00000558020 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
SNRPA1-204ENST00000558020 KIF21AQ7Z4S6 1674 aa25.48■■□□□ 1.67
SNRPA1-204ENST00000558020 RSF1Q96T23 1441 aaPredicted RBP25.46■■□□□ 1.67
SNRPA1-204ENST00000558020 MRC2Q9UBG0 1479 aa25.35■■□□□ 1.65
SNRPA1-204ENST00000558020 TOP2AP11388 1531 aaKnown RBP25.32■■□□□ 1.64
SNRPA1-204ENST00000558020 CEP164Q9UPV0 1460 aa25.29■■□□□ 1.64
SNRPA1-204ENST00000558020 CFTRP13569 1480 aa25.28■■□□□ 1.64
SNRPA1-204ENST00000558020 FANCD2Q9BXW9 1451 aa25.27■■□□□ 1.64
SNRPA1-204ENST00000558020 WDR62O43379 1518 aa25.25■■□□□ 1.63
SNRPA1-204ENST00000558020 CCDC88BA6NC98 1476 aa25.06■■□□□ 1.6
SNRPA1-204ENST00000558020 URB2Q14146 1524 aaKnown RBP25■■□□□ 1.59
SNRPA1-204ENST00000558020 PRDM2Q13029 1718 aa24.97■■□□□ 1.59
SNRPA1-204ENST00000558020 OSCARQ8IYS5 282 aa24.88■■□□□ 1.57
SNRPA1-204ENST00000558020 ABCC8Q09428 1581 aa24.84■■□□□ 1.57
SNRPA1-204ENST00000558020 IFT140Q96RY7 1462 aa24.79■■□□□ 1.56
SNRPA1-204ENST00000558020 TRIM41Q8WV44 630 aa24.78■■□□□ 1.56
SNRPA1-204ENST00000558020 TOPBP1Q92547 1522 aa24.77■■□□□ 1.56
SNRPA1-204ENST00000558020 DNMBPQ6XZF7 1577 aa24.69■■□□□ 1.54
SNRPA1-204ENST00000558020 ZNF608Q9ULD9 1512 aaPredicted RBP24.67■■□□□ 1.54
SNRPA1-204ENST00000558020 EIF4G3O43432 1585 aaKnown RBP24.53■■□□□ 1.52
SNRPA1-204ENST00000558020 POLA1P09884 1462 aaPredicted RBP24.51■■□□□ 1.51
SNRPA1-204ENST00000558020 TARBP1Q13395 1621 aaKnown RBP24.51■■□□□ 1.51
SNRPA1-204ENST00000558020 AQRO60306 1485 aaKnown RBP eCLIP24.51■■□□□ 1.512e-6■■■□□ 18.3
SNRPA1-204ENST00000558020 SUPT5HO00267 1087 aaKnown RBP24.5■■□□□ 1.51
SNRPA1-204ENST00000558020 SOGA1O94964 1423 aa24.49■■□□□ 1.51
SNRPA1-204ENST00000558020 FBLN2P98095 1184 aa24.45■■□□□ 1.5
SNRPA1-204ENST00000558020 RAD54L2Q9Y4B4 1467 aa24.42■■□□□ 1.5
SNRPA1-204ENST00000558020 TDRD9Q8NDG6 1382 aaKnown RBP24.41■■□□□ 1.5
SNRPA1-204ENST00000558020 FGD5Q6ZNL6 1462 aa24.38■■□□□ 1.49
SNRPA1-204ENST00000558020 RIMBP3CA6NJZ7 1639 aa24.37■■□□□ 1.49
SNRPA1-204ENST00000558020 RIMBP3BA6NNM3 1639 aa24.37■■□□□ 1.49
SNRPA1-204ENST00000558020 RIMBP3Q9UFD9 1639 aa24.37■■□□□ 1.49
SNRPA1-204ENST00000558020 CUX1P39880 1505 aa24.35■■□□□ 1.49
SNRPA1-204ENST00000558020 WDR97A6NE52 1622 aa24.34■■□□□ 1.49
SNRPA1-204ENST00000558020 ARHGEF11O15085 1522 aa24.33■■□□□ 1.49
SNRPA1-204ENST00000558020 CHD1O14646 1710 aa24.32■■□□□ 1.48
SNRPA1-204ENST00000558020 CHMP7Q8WUX9 453 aaPredicted RBP24.29■■□□□ 1.48
SNRPA1-204ENST00000558020 CYB5RLQ6IPT4 315 aa24.26■■□□□ 1.47
SNRPA1-204ENST00000558020 GRIN2BQ13224 1484 aa24.25■■□□□ 1.47
SNRPA1-204ENST00000558020 SNAPC4Q5SXM2 1469 aa24.24■■□□□ 1.47
SNRPA1-204ENST00000558020 MAGI1Q96QZ7 1491 aaPredicted RBP24.23■■□□□ 1.47
SNRPA1-204ENST00000558020 GAPVD1Q14C86 1478 aa24.17■■□□□ 1.46
SNRPA1-204ENST00000558020 SYNJ2O15056 1496 aa24.14■■□□□ 1.46
SNRPA1-204ENST00000558020 WRNQ14191 1432 aaPredicted RBP eCLIP24.13■■□□□ 1.45
SNRPA1-204ENST00000558020 ABCA10Q8WWZ4 1543 aa24.13■■□□□ 1.45
SNRPA1-204ENST00000558020 SYNJ1O43426 1573 aa24.12■■□□□ 1.45
SNRPA1-204ENST00000558020 ARAP1Q96P48 1450 aa24.07■■□□□ 1.44
SNRPA1-204ENST00000558020 PBRM1Q86U86 1689 aa24.05■■□□□ 1.44
SNRPA1-204ENST00000558020 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
SNRPA1-204ENST00000558020 ABCA5Q8WWZ7 1642 aa24.02■■□□□ 1.44
SNRPA1-204ENST00000558020 TRHP20396 242 aaPredicted RBP24.01■■□□□ 1.43
SNRPA1-204ENST00000558020 TOP2BQ02880 1626 aa24.01■■□□□ 1.43
SNRPA1-204ENST00000558020 BIVM-ERCC5R4GMW8 1640 aa23.99■■□□□ 1.43
SNRPA1-204ENST00000558020 GRIN2AQ12879 1464 aa23.89■■□□□ 1.42
SNRPA1-204ENST00000558020 FHAD1B1AJZ9 1412 aa23.88■■□□□ 1.41
SNRPA1-204ENST00000558020 ERICH3Q5RHP9 1530 aa23.84■■□□□ 1.41
SNRPA1-204ENST00000558020 ADAMTS12P58397 1594 aa23.83■■□□□ 1.41
SNRPA1-204ENST00000558020 NUP160Q12769 1436 aa23.8■■□□□ 1.4
SNRPA1-204ENST00000558020 CEP170Q5SW79 1584 aa23.75■■□□□ 1.39
SNRPA1-204ENST00000558020 JPH4Q96JJ6 628 aa23.67■■□□□ 1.38
SNRPA1-204ENST00000558020 SHROOM2Q13796 1616 aa23.65■■□□□ 1.38
SNRPA1-204ENST00000558020 ERCC6L2Q5T890 1561 aa23.65■■□□□ 1.38
SNRPA1-204ENST00000558020 KIF27Q86VH2 1401 aa23.64■■□□□ 1.37
SNRPA1-204ENST00000558020 PRG4Q92954 1404 aaPredicted RBP23.61■■□□□ 1.37
SNRPA1-204ENST00000558020 IGF1RP08069 1367 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms