RNA–Protein interactions for RNA: ENST00000557820.5

PKNOX1-207, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 4

Gene PKNOX1, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-207ENST00000557820 NISCHQ9Y2I1 1504 aa15.5■□□□□ 0.07
PKNOX1-207ENST00000557820 AEBP2Q6ZN18 517 aaPredicted RBP14.87□□□□□ -0.03
PKNOX1-207ENST00000557820 CHIC1Q5VXU3 224 aa14.05□□□□□ -0.16
PKNOX1-207ENST00000557820 CCDC180Q9P1Z9 1646 aa13.75□□□□□ -0.21
PKNOX1-207ENST00000557820 ABCC9O60706 1549 aa13.64□□□□□ -0.23
PKNOX1-207ENST00000557820 DCAF8L2P0C7V8 631 aa13.04□□□□□ -0.32
PKNOX1-207ENST00000557820 RB1CC1Q8TDY2 1594 aa12.99□□□□□ -0.33
PKNOX1-207ENST00000557820 NACADO15069 1562 aa12.94□□□□□ -0.34
PKNOX1-207ENST00000557820 ZCCHC6Q5VYS8 1495 aaKnown RBP12.92□□□□□ -0.34
PKNOX1-207ENST00000557820 MYO15BQ96JP2 1530 aa12.79□□□□□ -0.36
PKNOX1-207ENST00000557820 PABPN1Q86U42 306 aaKnown RBP eCLIP12.75□□□□□ -0.37
PKNOX1-207ENST00000557820 DCAF1Q9Y4B6 1507 aa12.75□□□□□ -0.37
PKNOX1-207ENST00000557820 UNC13AQ9UPW8 1703 aa12.74□□□□□ -0.37
PKNOX1-207ENST00000557820 SCRIBQ14160 1630 aa12.67□□□□□ -0.38
PKNOX1-207ENST00000557820 BICRAQ9NZM4 1560 aa12.65□□□□□ -0.38
PKNOX1-207ENST00000557820 SENP3Q9H4L4 574 aaPredicted RBP12.6□□□□□ -0.39
PKNOX1-207ENST00000557820 DNAJC5BQ9UF47 199 aa12.57□□□□□ -0.4
PKNOX1-207ENST00000557820 PHF23Q9BUL5 403 aaPredicted RBP12.45□□□□□ -0.42
PKNOX1-207ENST00000557820 SHROOM4Q9ULL8 1493 aa12.39□□□□□ -0.43
PKNOX1-207ENST00000557820 EIF4G1Q04637 1599 aaKnown RBP12.31□□□□□ -0.44
PKNOX1-207ENST00000557820 CC2D2AQ9P2K1 1620 aa12.29□□□□□ -0.44
PKNOX1-207ENST00000557820 CECR2Q9BXF3 1484 aa12.21□□□□□ -0.45
PKNOX1-207ENST00000557820 SMARCA4P51532 1647 aa12.05□□□□□ -0.48
PKNOX1-207ENST00000557820 MROH2BQ7Z745 1585 aa12.01□□□□□ -0.49
PKNOX1-207ENST00000557820 ATAD2BQ9ULI0 1458 aa12□□□□□ -0.49
PKNOX1-207ENST00000557820 BAZ1AQ9NRL2 1556 aaPredicted RBP12□□□□□ -0.49
PKNOX1-207ENST00000557820 NCAPD3P42695 1498 aa11.95□□□□□ -0.5
PKNOX1-207ENST00000557820 SMARCA2P51531 1590 aa11.94□□□□□ -0.5
PKNOX1-207ENST00000557820 BAZ1BQ9UIG0 1483 aaKnown RBP11.9□□□□□ -0.5
PKNOX1-207ENST00000557820 HMGXB3Q12766 1538 aa11.9□□□□□ -0.5
PKNOX1-207ENST00000557820 PEG3Q9GZU2 1588 aa11.88□□□□□ -0.51
PKNOX1-207ENST00000557820 WIZO95785 1651 aa11.87□□□□□ -0.51
PKNOX1-207ENST00000557820 RSF1Q96T23 1441 aaPredicted RBP11.82□□□□□ -0.52
PKNOX1-207ENST00000557820 NESP48681 1621 aa11.8□□□□□ -0.52
PKNOX1-207ENST00000557820 FOXD1Q16676 465 aa11.8□□□□□ -0.52
PKNOX1-207ENST00000557820 ERCC6Q03468 1493 aa11.71□□□□□ -0.53
PKNOX1-207ENST00000557820 TOP2AP11388 1531 aaKnown RBP11.7□□□□□ -0.54
PKNOX1-207ENST00000557820 LAMC3Q9Y6N6 1575 aa11.64□□□□□ -0.55
PKNOX1-207ENST00000557820 CADPSQ9ULU8 1353 aa11.62□□□□□ -0.55
PKNOX1-207ENST00000557820 KIF21AQ7Z4S6 1674 aa11.62□□□□□ -0.55
PKNOX1-207ENST00000557820 THOC2Q8NI27 1593 aaKnown RBP11.58□□□□□ -0.55
PKNOX1-207ENST00000557820 CCDC88BA6NC98 1476 aa11.57□□□□□ -0.56
PKNOX1-207ENST00000557820 PDS5BQ9NTI5 1447 aa11.56□□□□□ -0.56
PKNOX1-207ENST00000557820 SUPT5HO00267 1087 aaKnown RBP11.54□□□□□ -0.56
PKNOX1-207ENST00000557820 CUX2O14529 1486 aa11.54□□□□□ -0.56
PKNOX1-207ENST00000557820 CFTRP13569 1480 aa11.54□□□□□ -0.56
PKNOX1-207ENST00000557820 FANCD2Q9BXW9 1451 aa11.52□□□□□ -0.56
PKNOX1-207ENST00000557820 CEP164Q9UPV0 1460 aa11.51□□□□□ -0.57
PKNOX1-207ENST00000557820 MRC2Q9UBG0 1479 aa11.5□□□□□ -0.57
PKNOX1-207ENST00000557820 WDR62O43379 1518 aa11.45□□□□□ -0.58
PKNOX1-207ENST00000557820 URB2Q14146 1524 aaKnown RBP11.44□□□□□ -0.58
PKNOX1-207ENST00000557820 PRDM2Q13029 1718 aa11.43□□□□□ -0.58
PKNOX1-207ENST00000557820 TOPBP1Q92547 1522 aa11.34□□□□□ -0.59
PKNOX1-207ENST00000557820 DNMBPQ6XZF7 1577 aa11.3□□□□□ -0.6
PKNOX1-207ENST00000557820 ZNF608Q9ULD9 1512 aaPredicted RBP11.28□□□□□ -0.6
PKNOX1-207ENST00000557820 CUX1P39880 1505 aa11.26□□□□□ -0.61
PKNOX1-207ENST00000557820 DNAJC5Q9H3Z4 198 aa11.26□□□□□ -0.61
PKNOX1-207ENST00000557820 IFT140Q96RY7 1462 aa11.25□□□□□ -0.61
PKNOX1-207ENST00000557820 POLA1P09884 1462 aaPredicted RBP11.24□□□□□ -0.61
PKNOX1-207ENST00000557820 RAD54L2Q9Y4B4 1467 aa11.24□□□□□ -0.61
PKNOX1-207ENST00000557820 ABCC8Q09428 1581 aa11.23□□□□□ -0.61
PKNOX1-207ENST00000557820 FGD5Q6ZNL6 1462 aa11.22□□□□□ -0.61
PKNOX1-207ENST00000557820 TARBP1Q13395 1621 aaKnown RBP11.2□□□□□ -0.62
PKNOX1-207ENST00000557820 EIF4G3O43432 1585 aaKnown RBP11.2□□□□□ -0.62
PKNOX1-207ENST00000557820 AQRO60306 1485 aaKnown RBP eCLIP11.19□□□□□ -0.62
PKNOX1-207ENST00000557820 PLPPR3Q6T4P5 718 aa11.18□□□□□ -0.62
PKNOX1-207ENST00000557820 SOGA1O94964 1423 aa11.17□□□□□ -0.62
PKNOX1-207ENST00000557820 TDRD9Q8NDG6 1382 aaKnown RBP11.16□□□□□ -0.62
PKNOX1-207ENST00000557820 SYNJ1O43426 1573 aa11.16□□□□□ -0.62
PKNOX1-207ENST00000557820 WRNQ14191 1432 aaPredicted RBP eCLIP11.14□□□□□ -0.63
PKNOX1-207ENST00000557820 WDR97A6NE52 1622 aa11.11□□□□□ -0.63
PKNOX1-207ENST00000557820 BIVM-ERCC5R4GMW8 1640 aa11.1□□□□□ -0.63
PKNOX1-207ENST00000557820 TOP2BQ02880 1626 aa11.09□□□□□ -0.63
PKNOX1-207ENST00000557820 SNAPC4Q5SXM2 1469 aa11.09□□□□□ -0.63
PKNOX1-207ENST00000557820 FBLN2P98095 1184 aa11.07□□□□□ -0.64
PKNOX1-207ENST00000557820 CHD1O14646 1710 aa11.06□□□□□ -0.64
PKNOX1-207ENST00000557820 ABCA10Q8WWZ4 1543 aa11.06□□□□□ -0.64
PKNOX1-207ENST00000557820 OSCARQ8IYS5 282 aa11.06□□□□□ -0.64
PKNOX1-207ENST00000557820 ABCA5Q8WWZ7 1642 aa11.05□□□□□ -0.64
PKNOX1-207ENST00000557820 PPP6R1Q9UPN7 881 aa11.04□□□□□ -0.64
PKNOX1-207ENST00000557820 GRIN2BQ13224 1484 aa11.04□□□□□ -0.64
PKNOX1-207ENST00000557820 GAPVD1Q14C86 1478 aa11.04□□□□□ -0.64
PKNOX1-207ENST00000557820 PBRM1Q86U86 1689 aa11.04□□□□□ -0.64
PKNOX1-207ENST00000557820 MAGI1Q96QZ7 1491 aaPredicted RBP11□□□□□ -0.65
PKNOX1-207ENST00000557820 ADRA2BP18089 450 aa10.99□□□□□ -0.65
PKNOX1-207ENST00000557820 PIAS4Q8N2W9 510 aaPredicted RBP10.99□□□□□ -0.65
PKNOX1-207ENST00000557820 MSH5O43196 834 aa10.98□□□□□ -0.65
PKNOX1-207ENST00000557820 POTEDQ86YR6 584 aa10.98□□□□□ -0.65
PKNOX1-207ENST00000557820 TRIM41Q8WV44 630 aa10.98□□□□□ -0.65
PKNOX1-207ENST00000557820 CHMP7Q8WUX9 453 aaPredicted RBP10.97□□□□□ -0.65
PKNOX1-207ENST00000557820 SYNJ2O15056 1496 aa10.97□□□□□ -0.65
PKNOX1-207ENST00000557820 ADAMTS12P58397 1594 aa10.97□□□□□ -0.65
PKNOX1-207ENST00000557820 RIMBP3CA6NJZ7 1639 aa10.96□□□□□ -0.65
PKNOX1-207ENST00000557820 RIMBP3BA6NNM3 1639 aa10.96□□□□□ -0.65
PKNOX1-207ENST00000557820 RIMBP3Q9UFD9 1639 aa10.96□□□□□ -0.65
PKNOX1-207ENST00000557820 ARHGEF11O15085 1522 aa10.94□□□□□ -0.66
PKNOX1-207ENST00000557820 CLASP1Q7Z460 1538 aa10.93□□□□□ -0.66
PKNOX1-207ENST00000557820 GRIN2AQ12879 1464 aa10.92□□□□□ -0.66
PKNOX1-207ENST00000557820 ERICH3Q5RHP9 1530 aa10.91□□□□□ -0.66
PKNOX1-207ENST00000557820 FHAD1B1AJZ9 1412 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms