RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 NISCHQ9Y2I1 1504 aa40.12■■■■■ 4.01
SCFD1-224ENST00000557713 ABCC9O60706 1549 aa36.04■■■■□ 3.36
SCFD1-224ENST00000557713 CCDC180Q9P1Z9 1646 aa35.98■■■■□ 3.35
SCFD1-224ENST00000557713 RB1CC1Q8TDY2 1594 aa34.28■■■■□ 3.08
SCFD1-224ENST00000557713 NACADO15069 1562 aa34.05■■■■□ 3.04
SCFD1-224ENST00000557713 DNAJC5BQ9UF47 199 aa33.94■■■■□ 3.02
SCFD1-224ENST00000557713 DCAF8L2P0C7V8 631 aa33.88■■■■□ 3.01
SCFD1-224ENST00000557713 MYO15BQ96JP2 1530 aa33.6■■■□□ 2.97
SCFD1-224ENST00000557713 PABPN1Q86U42 306 aaKnown RBP eCLIP33.58■■■□□ 2.97
SCFD1-224ENST00000557713 UNC13AQ9UPW8 1703 aa33.48■■■□□ 2.95
SCFD1-224ENST00000557713 BICRAQ9NZM4 1560 aa33.32■■■□□ 2.92
SCFD1-224ENST00000557713 ZCCHC6Q5VYS8 1495 aaKnown RBP33.23■■■□□ 2.91
SCFD1-224ENST00000557713 DCAF1Q9Y4B6 1507 aa33.15■■■□□ 2.9
SCFD1-224ENST00000557713 SHROOM4Q9ULL8 1493 aa32.85■■■□□ 2.85
SCFD1-224ENST00000557713 SCRIBQ14160 1630 aa32.77■■■□□ 2.84
SCFD1-224ENST00000557713 CC2D2AQ9P2K1 1620 aa32.55■■■□□ 2.8
SCFD1-224ENST00000557713 CECR2Q9BXF3 1484 aa32.48■■■□□ 2.79
SCFD1-224ENST00000557713 EIF4G1Q04637 1599 aaKnown RBP32.48■■■□□ 2.79
SCFD1-224ENST00000557713 NCAPD3P42695 1498 aa31.48■■■□□ 2.63
SCFD1-224ENST00000557713 ATAD2BQ9ULI0 1458 aa31.35■■■□□ 2.61
SCFD1-224ENST00000557713 SMARCA4P51532 1647 aa31.27■■■□□ 2.6
SCFD1-224ENST00000557713 SMARCA2P51531 1590 aa31.24■■■□□ 2.59
SCFD1-224ENST00000557713 HMGXB3Q12766 1538 aa31.19■■■□□ 2.58
SCFD1-224ENST00000557713 DNAJC5Q9H3Z4 198 aa31.19■■■□□ 2.58
SCFD1-224ENST00000557713 BAZ1AQ9NRL2 1556 aaPredicted RBP31.13■■■□□ 2.57
SCFD1-224ENST00000557713 ERCC6Q03468 1493 aa31.09■■■□□ 2.57
SCFD1-224ENST00000557713 CUX2O14529 1486 aa31.08■■■□□ 2.57
SCFD1-224ENST00000557713 BAZ1BQ9UIG0 1483 aaKnown RBP31.01■■■□□ 2.56
SCFD1-224ENST00000557713 PEG3Q9GZU2 1588 aa31■■■□□ 2.55
SCFD1-224ENST00000557713 NESP48681 1621 aa30.97■■■□□ 2.55
SCFD1-224ENST00000557713 MROH2BQ7Z745 1585 aa30.92■■■□□ 2.54
SCFD1-224ENST00000557713 LAMC3Q9Y6N6 1575 aa30.73■■■□□ 2.51
SCFD1-224ENST00000557713 THOC2Q8NI27 1593 aaKnown RBP30.63■■■□□ 2.49
SCFD1-224ENST00000557713 PDS5BQ9NTI5 1447 aa30.56■■■□□ 2.48
SCFD1-224ENST00000557713 KIF21AQ7Z4S6 1674 aa30.52■■■□□ 2.48
SCFD1-224ENST00000557713 WIZO95785 1651 aa30.52■■■□□ 2.48
SCFD1-224ENST00000557713 CADPSQ9ULU8 1353 aa30.51■■■□□ 2.47
SCFD1-224ENST00000557713 MRC2Q9UBG0 1479 aa30.29■■■□□ 2.44
SCFD1-224ENST00000557713 RSF1Q96T23 1441 aaPredicted RBP30.28■■■□□ 2.44
SCFD1-224ENST00000557713 WDR62O43379 1518 aa30.22■■■□□ 2.43
SCFD1-224ENST00000557713 CFTRP13569 1480 aa30.15■■■□□ 2.42
SCFD1-224ENST00000557713 CEP164Q9UPV0 1460 aa30.15■■■□□ 2.42
SCFD1-224ENST00000557713 FANCD2Q9BXW9 1451 aa30.13■■■□□ 2.41
SCFD1-224ENST00000557713 TOP2AP11388 1531 aaKnown RBP30.13■■■□□ 2.41
SCFD1-224ENST00000557713 URB2Q14146 1524 aaKnown RBP29.9■■■□□ 2.38
SCFD1-224ENST00000557713 CCDC88BA6NC98 1476 aa29.82■■■□□ 2.36
SCFD1-224ENST00000557713 PRDM2Q13029 1718 aa29.76■■■□□ 2.35
SCFD1-224ENST00000557713 TRIM41Q8WV44 630 aa29.74■■■□□ 2.35
SCFD1-224ENST00000557713 OSCARQ8IYS5 282 aa29.7■■■□□ 2.35
SCFD1-224ENST00000557713 IFT140Q96RY7 1462 aa29.57■■■□□ 2.32
SCFD1-224ENST00000557713 TOPBP1Q92547 1522 aa29.56■■■□□ 2.32
SCFD1-224ENST00000557713 ZNF608Q9ULD9 1512 aaPredicted RBP29.54■■■□□ 2.32
SCFD1-224ENST00000557713 ABCC8Q09428 1581 aa29.51■■■□□ 2.31
SCFD1-224ENST00000557713 DNMBPQ6XZF7 1577 aa29.43■■■□□ 2.3
SCFD1-224ENST00000557713 EIF4G3O43432 1585 aaKnown RBP29.33■■■□□ 2.29
SCFD1-224ENST00000557713 TARBP1Q13395 1621 aaKnown RBP29.31■■■□□ 2.28
SCFD1-224ENST00000557713 AQRO60306 1485 aaKnown RBP eCLIP29.28■■■□□ 2.28
SCFD1-224ENST00000557713 RIMBP3CA6NJZ7 1639 aa29.27■■■□□ 2.28
SCFD1-224ENST00000557713 RIMBP3BA6NNM3 1639 aa29.27■■■□□ 2.28
SCFD1-224ENST00000557713 RIMBP3Q9UFD9 1639 aa29.27■■■□□ 2.28
SCFD1-224ENST00000557713 POLA1P09884 1462 aaPredicted RBP29.26■■■□□ 2.27
SCFD1-224ENST00000557713 ARHGEF11O15085 1522 aa29.18■■■□□ 2.26
SCFD1-224ENST00000557713 RAD54L2Q9Y4B4 1467 aa29.17■■■□□ 2.26
SCFD1-224ENST00000557713 SOGA1O94964 1423 aa29.14■■■□□ 2.26
SCFD1-224ENST00000557713 CHD1O14646 1710 aa29.11■■■□□ 2.25
SCFD1-224ENST00000557713 TDRD9Q8NDG6 1382 aaKnown RBP29.1■■■□□ 2.25
SCFD1-224ENST00000557713 FBLN2P98095 1184 aa29.07■■■□□ 2.24
SCFD1-224ENST00000557713 FGD5Q6ZNL6 1462 aa29.06■■■□□ 2.24
SCFD1-224ENST00000557713 CUX1P39880 1505 aa29.04■■■□□ 2.24
SCFD1-224ENST00000557713 CYB5RLQ6IPT4 315 aa29■■■□□ 2.23
SCFD1-224ENST00000557713 WDR97A6NE52 1622 aa28.98■■■□□ 2.23
SCFD1-224ENST00000557713 SNAPC4Q5SXM2 1469 aa28.94■■■□□ 2.22
SCFD1-224ENST00000557713 ARAP1Q96P48 1450 aa28.9■■■□□ 2.22
SCFD1-224ENST00000557713 SUPT5HO00267 1087 aaKnown RBP28.88■■■□□ 2.21
SCFD1-224ENST00000557713 GRIN2BQ13224 1484 aa28.87■■■□□ 2.21
SCFD1-224ENST00000557713 MAGI1Q96QZ7 1491 aaPredicted RBP28.87■■■□□ 2.21
SCFD1-224ENST00000557713 CHMP7Q8WUX9 453 aaPredicted RBP28.87■■■□□ 2.21
SCFD1-224ENST00000557713 CLASP1Q7Z460 1538 aa28.82■■■□□ 2.2
SCFD1-224ENST00000557713 SYNJ2O15056 1496 aa28.78■■■□□ 2.2
SCFD1-224ENST00000557713 SYNJ1O43426 1573 aa28.77■■■□□ 2.2
SCFD1-224ENST00000557713 GAPVD1Q14C86 1478 aa28.77■■■□□ 2.2
SCFD1-224ENST00000557713 ABCA10Q8WWZ4 1543 aa28.74■■■□□ 2.19
SCFD1-224ENST00000557713 PBRM1Q86U86 1689 aa28.71■■■□□ 2.19
SCFD1-224ENST00000557713 ABCA5Q8WWZ7 1642 aa28.68■■■□□ 2.18
SCFD1-224ENST00000557713 TRHP20396 242 aaPredicted RBP28.67■■■□□ 2.18
SCFD1-224ENST00000557713 WRNQ14191 1432 aaPredicted RBP eCLIP28.61■■■□□ 2.17
SCFD1-224ENST00000557713 TOP2BQ02880 1626 aa28.55■■■□□ 2.16
SCFD1-224ENST00000557713 BIVM-ERCC5R4GMW8 1640 aa28.54■■■□□ 2.16
SCFD1-224ENST00000557713 GRIN2AQ12879 1464 aa28.5■■■□□ 2.15
SCFD1-224ENST00000557713 ADAMTS12P58397 1594 aa28.45■■■□□ 2.15
SCFD1-224ENST00000557713 NUP160Q12769 1436 aa28.43■■■□□ 2.14
SCFD1-224ENST00000557713 FHAD1B1AJZ9 1412 aa28.41■■■□□ 2.14
SCFD1-224ENST00000557713 CEP170Q5SW79 1584 aa28.4■■■□□ 2.14
SCFD1-224ENST00000557713 ERICH3Q5RHP9 1530 aa28.38■■■□□ 2.13
SCFD1-224ENST00000557713 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
SCFD1-224ENST00000557713 SHROOM2Q13796 1616 aa28.29■■■□□ 2.12
SCFD1-224ENST00000557713 JPH4Q96JJ6 628 aa28.16■■■□□ 2.1
SCFD1-224ENST00000557713 PRG4Q92954 1404 aaPredicted RBP28.15■■■□□ 2.1
SCFD1-224ENST00000557713 IGF1RP08069 1367 aa28.05■■■□□ 2.08
SCFD1-224ENST00000557713 RUSC2Q8N2Y8 1516 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms