RNA–Protein interactions for RNA: ENST00000557662.1

RIPK3-207, Transcript of receptor interacting serine/threonine kinase 3, humanhuman

TSL 2

Gene RIPK3, Length 569 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK3-207ENST00000557662 NISCHQ9Y2I1 1504 aa57.92■■■■■ 6.86
RIPK3-207ENST00000557662 CCDC180Q9P1Z9 1646 aa52.04■■■■■ 5.92
RIPK3-207ENST00000557662 ABCC9O60706 1549 aa51.58■■■■■ 5.85
RIPK3-207ENST00000557662 RB1CC1Q8TDY2 1594 aa49.3■■■■■ 5.48
RIPK3-207ENST00000557662 NACADO15069 1562 aa49.05■■■■■ 5.44
RIPK3-207ENST00000557662 MYO15BQ96JP2 1530 aa48.53■■■■■ 5.36
RIPK3-207ENST00000557662 UNC13AQ9UPW8 1703 aa48.41■■■■■ 5.34
RIPK3-207ENST00000557662 DCAF8L2P0C7V8 631 aa48.34■■■■■ 5.33
RIPK3-207ENST00000557662 DNAJC5BQ9UF47 199 aa48.24■■■■■ 5.31
RIPK3-207ENST00000557662 ZCCHC6Q5VYS8 1495 aaKnown RBP48.09■■■■■ 5.29
RIPK3-207ENST00000557662 BICRAQ9NZM4 1560 aa47.98■■■■■ 5.27
RIPK3-207ENST00000557662 DCAF1Q9Y4B6 1507 aa47.97■■■■■ 5.27
RIPK3-207ENST00000557662 PABPN1Q86U42 306 aaKnown RBP eCLIP47.93■■■■■ 5.26
RIPK3-207ENST00000557662 SHROOM4Q9ULL8 1493 aa47.34■■■■■ 5.17
RIPK3-207ENST00000557662 SCRIBQ14160 1630 aa47.23■■■■■ 5.15
RIPK3-207ENST00000557662 CC2D2AQ9P2K1 1620 aa46.74■■■■■ 5.07
RIPK3-207ENST00000557662 EIF4G1Q04637 1599 aaKnown RBP46.7■■■■■ 5.07
RIPK3-207ENST00000557662 CECR2Q9BXF3 1484 aa46.47■■■■■ 5.03
RIPK3-207ENST00000557662 NCAPD3P42695 1498 aa45.25■■■■■ 4.83
RIPK3-207ENST00000557662 SMARCA4P51532 1647 aa45.19■■■■■ 4.82
RIPK3-207ENST00000557662 ATAD2BQ9ULI0 1458 aa45.11■■■■■ 4.81
RIPK3-207ENST00000557662 SMARCA2P51531 1590 aa45.01■■■■■ 4.8
RIPK3-207ENST00000557662 HMGXB3Q12766 1538 aa45■■■■■ 4.79
RIPK3-207ENST00000557662 BAZ1AQ9NRL2 1556 aaPredicted RBP44.93■■■■■ 4.78
RIPK3-207ENST00000557662 PEG3Q9GZU2 1588 aa44.84■■■■■ 4.77
RIPK3-207ENST00000557662 BAZ1BQ9UIG0 1483 aaKnown RBP44.62■■■■■ 4.73
RIPK3-207ENST00000557662 MROH2BQ7Z745 1585 aa44.61■■■■■ 4.73
RIPK3-207ENST00000557662 CUX2O14529 1486 aa44.49■■■■■ 4.71
RIPK3-207ENST00000557662 ERCC6Q03468 1493 aa44.46■■■■■ 4.71
RIPK3-207ENST00000557662 NESP48681 1621 aa44.42■■■■■ 4.7
RIPK3-207ENST00000557662 LAMC3Q9Y6N6 1575 aa44.22■■■■■ 4.67
RIPK3-207ENST00000557662 DNAJC5Q9H3Z4 198 aa44.14■■■■■ 4.66
RIPK3-207ENST00000557662 WIZO95785 1651 aa44.11■■■■■ 4.65
RIPK3-207ENST00000557662 THOC2Q8NI27 1593 aaKnown RBP44.09■■■■■ 4.65
RIPK3-207ENST00000557662 KIF21AQ7Z4S6 1674 aa43.99■■■■■ 4.63
RIPK3-207ENST00000557662 PDS5BQ9NTI5 1447 aa43.82■■■■■ 4.61
RIPK3-207ENST00000557662 CADPSQ9ULU8 1353 aa43.8■■■■■ 4.6
RIPK3-207ENST00000557662 RSF1Q96T23 1441 aaPredicted RBP43.72■■■■■ 4.59
RIPK3-207ENST00000557662 TOP2AP11388 1531 aaKnown RBP43.57■■■■■ 4.56
RIPK3-207ENST00000557662 MRC2Q9UBG0 1479 aa43.5■■■■■ 4.55
RIPK3-207ENST00000557662 WDR62O43379 1518 aa43.48■■■■■ 4.55
RIPK3-207ENST00000557662 CFTRP13569 1480 aa43.42■■■■■ 4.54
RIPK3-207ENST00000557662 CEP164Q9UPV0 1460 aa43.34■■■■■ 4.53
RIPK3-207ENST00000557662 FANCD2Q9BXW9 1451 aa43.31■■■■■ 4.52
RIPK3-207ENST00000557662 PRDM2Q13029 1718 aa43.2■■■■■ 4.51
RIPK3-207ENST00000557662 URB2Q14146 1524 aaKnown RBP43.01■■■■■ 4.48
RIPK3-207ENST00000557662 CCDC88BA6NC98 1476 aa43■■■■■ 4.47
RIPK3-207ENST00000557662 TOPBP1Q92547 1522 aa42.56■■■■■ 4.4
RIPK3-207ENST00000557662 IFT140Q96RY7 1462 aa42.48■■■■■ 4.39
RIPK3-207ENST00000557662 ABCC8Q09428 1581 aa42.45■■■■■ 4.39
RIPK3-207ENST00000557662 DNMBPQ6XZF7 1577 aa42.45■■■■■ 4.39
RIPK3-207ENST00000557662 ZNF608Q9ULD9 1512 aaPredicted RBP42.41■■■■■ 4.38
RIPK3-207ENST00000557662 OSCARQ8IYS5 282 aa42.29■■■■■ 4.36
RIPK3-207ENST00000557662 TARBP1Q13395 1621 aaKnown RBP42.28■■■■■ 4.36
RIPK3-207ENST00000557662 EIF4G3O43432 1585 aaKnown RBP42.26■■■■■ 4.36
RIPK3-207ENST00000557662 POLA1P09884 1462 aaPredicted RBP42.14■■■■■ 4.34
RIPK3-207ENST00000557662 TRIM41Q8WV44 630 aa42.07■■■■■ 4.33
RIPK3-207ENST00000557662 AQRO60306 1485 aaKnown RBP eCLIP41.98■■■■■ 4.31
RIPK3-207ENST00000557662 CHD1O14646 1710 aa41.95■■■■■ 4.31
RIPK3-207ENST00000557662 RIMBP3CA6NJZ7 1639 aa41.94■■■■■ 4.3
RIPK3-207ENST00000557662 RIMBP3BA6NNM3 1639 aa41.94■■■■■ 4.3
RIPK3-207ENST00000557662 RIMBP3Q9UFD9 1639 aa41.94■■■■■ 4.3
RIPK3-207ENST00000557662 CUX1P39880 1505 aa41.92■■■■■ 4.3
RIPK3-207ENST00000557662 RAD54L2Q9Y4B4 1467 aa41.91■■■■■ 4.3
RIPK3-207ENST00000557662 WDR97A6NE52 1622 aa41.87■■■■■ 4.29
RIPK3-207ENST00000557662 FGD5Q6ZNL6 1462 aa41.87■■■■■ 4.29
RIPK3-207ENST00000557662 SOGA1O94964 1423 aa41.84■■■■■ 4.29
RIPK3-207ENST00000557662 ARHGEF11O15085 1522 aa41.79■■■■■ 4.28
RIPK3-207ENST00000557662 TDRD9Q8NDG6 1382 aaKnown RBP41.7■■■■■ 4.27
RIPK3-207ENST00000557662 SUPT5HO00267 1087 aaKnown RBP41.6■■■■■ 4.25
RIPK3-207ENST00000557662 SNAPC4Q5SXM2 1469 aa41.6■■■■■ 4.25
RIPK3-207ENST00000557662 MAGI1Q96QZ7 1491 aaPredicted RBP41.54■■■■■ 4.24
RIPK3-207ENST00000557662 GRIN2BQ13224 1484 aa41.52■■■■■ 4.24
RIPK3-207ENST00000557662 PBRM1Q86U86 1689 aa41.52■■■■■ 4.24
RIPK3-207ENST00000557662 CLASP1Q7Z460 1538 aa41.48■■■■■ 4.23
RIPK3-207ENST00000557662 ABCA5Q8WWZ7 1642 aa41.47■■■■■ 4.23
RIPK3-207ENST00000557662 ABCA10Q8WWZ4 1543 aa41.45■■■■■ 4.23
RIPK3-207ENST00000557662 FBLN2P98095 1184 aa41.43■■■■■ 4.22
RIPK3-207ENST00000557662 ARAP1Q96P48 1450 aa41.41■■■■■ 4.22
RIPK3-207ENST00000557662 BIVM-ERCC5R4GMW8 1640 aa41.39■■■■■ 4.22
RIPK3-207ENST00000557662 GAPVD1Q14C86 1478 aa41.39■■■■■ 4.22
RIPK3-207ENST00000557662 SYNJ2O15056 1496 aa41.38■■■■■ 4.21
RIPK3-207ENST00000557662 SYNJ1O43426 1573 aa41.36■■■■■ 4.21
RIPK3-207ENST00000557662 TOP2BQ02880 1626 aa41.33■■■■■ 4.21
RIPK3-207ENST00000557662 CYB5RLQ6IPT4 315 aa41.24■■■■■ 4.19
RIPK3-207ENST00000557662 CHMP7Q8WUX9 453 aaPredicted RBP41.24■■■■■ 4.19
RIPK3-207ENST00000557662 WRNQ14191 1432 aaPredicted RBP eCLIP41.2■■■■■ 4.19
RIPK3-207ENST00000557662 ADAMTS12P58397 1594 aa41.09■■■■■ 4.17
RIPK3-207ENST00000557662 GRIN2AQ12879 1464 aa41.02■■■■■ 4.16
RIPK3-207ENST00000557662 ERICH3Q5RHP9 1530 aa40.95■■■■■ 4.15
RIPK3-207ENST00000557662 NUP160Q12769 1436 aa40.92■■■■■ 4.14
RIPK3-207ENST00000557662 CEP170Q5SW79 1584 aa40.91■■■■■ 4.14
RIPK3-207ENST00000557662 FHAD1B1AJZ9 1412 aa40.87■■■■■ 4.13
RIPK3-207ENST00000557662 SHROOM2Q13796 1616 aa40.82■■■■■ 4.12
RIPK3-207ENST00000557662 ERCC6L2Q5T890 1561 aa40.78■■■■■ 4.12
RIPK3-207ENST00000557662 TRHP20396 242 aaPredicted RBP40.61■■■■■ 4.09
RIPK3-207ENST00000557662 RUSC2Q8N2Y8 1516 aa40.52■■■■■ 4.08
RIPK3-207ENST00000557662 CUL7Q14999 1698 aa40.42■■■■■ 4.06
RIPK3-207ENST00000557662 IGF1RP08069 1367 aa40.37■■■■■ 4.05
RIPK3-207ENST00000557662 KIF27Q86VH2 1401 aa40.37■■■■■ 4.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms