RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 NISCHQ9Y2I1 1504 aa34.73■■■■□ 3.15
TMEM260-215ENST00000557626 ABCC9O60706 1549 aa33.19■■■□□ 2.9
TMEM260-215ENST00000557626 DNAJC5BQ9UF47 199 aa32.32■■■□□ 2.76
TMEM260-215ENST00000557626 CCDC180Q9P1Z9 1646 aa31.83■■■□□ 2.69
TMEM260-215ENST00000557626 RB1CC1Q8TDY2 1594 aa30.98■■■□□ 2.55
TMEM260-215ENST00000557626 DNAJC5Q9H3Z4 198 aa30.74■■■□□ 2.51
TMEM260-215ENST00000557626 PABPN1Q86U42 306 aaKnown RBP eCLIP30.64■■■□□ 2.5
TMEM260-215ENST00000557626 NACADO15069 1562 aa30.4■■■□□ 2.46
TMEM260-215ENST00000557626 UNC13AQ9UPW8 1703 aa30.3■■■□□ 2.44
TMEM260-215ENST00000557626 BICRAQ9NZM4 1560 aa30.1■■■□□ 2.41
TMEM260-215ENST00000557626 CECR2Q9BXF3 1484 aa30.05■■■□□ 2.4
TMEM260-215ENST00000557626 DCAF8L2P0C7V8 631 aa29.95■■■□□ 2.39
TMEM260-215ENST00000557626 CC2D2AQ9P2K1 1620 aa29.92■■■□□ 2.38
TMEM260-215ENST00000557626 SHROOM4Q9ULL8 1493 aa29.57■■■□□ 2.32
TMEM260-215ENST00000557626 EIF4G1Q04637 1599 aaKnown RBP29.5■■■□□ 2.31
TMEM260-215ENST00000557626 MYO15BQ96JP2 1530 aa29.49■■■□□ 2.31
TMEM260-215ENST00000557626 CUX2O14529 1486 aa29.2■■■□□ 2.26
TMEM260-215ENST00000557626 SCRIBQ14160 1630 aa28.93■■■□□ 2.22
TMEM260-215ENST00000557626 TRIM41Q8WV44 630 aa28.86■■■□□ 2.21
TMEM260-215ENST00000557626 ERCC6Q03468 1493 aa28.79■■■□□ 2.2
TMEM260-215ENST00000557626 DCAF1Q9Y4B6 1507 aa28.59■■■□□ 2.17
TMEM260-215ENST00000557626 ZCCHC6Q5VYS8 1495 aaKnown RBP28.49■■■□□ 2.15
TMEM260-215ENST00000557626 THOC2Q8NI27 1593 aaKnown RBP28.12■■■□□ 2.09
TMEM260-215ENST00000557626 NESP48681 1621 aa28.1■■■□□ 2.09
TMEM260-215ENST00000557626 NCAPD3P42695 1498 aa28.05■■■□□ 2.08
TMEM260-215ENST00000557626 SMARCA2P51531 1590 aa27.86■■■□□ 2.05
TMEM260-215ENST00000557626 ATAD2BQ9ULI0 1458 aa27.78■■■□□ 2.04
TMEM260-215ENST00000557626 HMGXB3Q12766 1538 aa27.76■■■□□ 2.03
TMEM260-215ENST00000557626 KIF21AQ7Z4S6 1674 aa27.73■■■□□ 2.03
TMEM260-215ENST00000557626 BAZ1AQ9NRL2 1556 aaPredicted RBP27.69■■■□□ 2.02
TMEM260-215ENST00000557626 LAMC3Q9Y6N6 1575 aa27.69■■■□□ 2.02
TMEM260-215ENST00000557626 OSCARQ8IYS5 282 aa27.59■■■□□ 2.01
TMEM260-215ENST00000557626 PDS5BQ9NTI5 1447 aa27.57■■■□□ 2
TMEM260-215ENST00000557626 AEBP2Q6ZN18 517 aaPredicted RBP27.52■■■□□ 2
TMEM260-215ENST00000557626 BAZ1BQ9UIG0 1483 aaKnown RBP27.47■■□□□ 1.99
TMEM260-215ENST00000557626 RIMBP3CA6NJZ7 1639 aa27.44■■□□□ 1.98
TMEM260-215ENST00000557626 RIMBP3BA6NNM3 1639 aa27.44■■□□□ 1.98
TMEM260-215ENST00000557626 RIMBP3Q9UFD9 1639 aa27.44■■□□□ 1.98
TMEM260-215ENST00000557626 SMARCA4P51532 1647 aa27.43■■□□□ 1.98
TMEM260-215ENST00000557626 MRC2Q9UBG0 1479 aa27.43■■□□□ 1.98
TMEM260-215ENST00000557626 WDR62O43379 1518 aa27.41■■□□□ 1.98
TMEM260-215ENST00000557626 TRHP20396 242 aaPredicted RBP27.24■■□□□ 1.95
TMEM260-215ENST00000557626 ARHGEF11O15085 1522 aa27.19■■□□□ 1.94
TMEM260-215ENST00000557626 PEG3Q9GZU2 1588 aa27.14■■□□□ 1.94
TMEM260-215ENST00000557626 CADPSQ9ULU8 1353 aa27.14■■□□□ 1.94
TMEM260-215ENST00000557626 CYB5RLQ6IPT4 315 aa27.05■■□□□ 1.92
TMEM260-215ENST00000557626 CEP164Q9UPV0 1460 aa27.04■■□□□ 1.92
TMEM260-215ENST00000557626 FANCD2Q9BXW9 1451 aa26.87■■□□□ 1.89
TMEM260-215ENST00000557626 ARAP1Q96P48 1450 aa26.82■■□□□ 1.88
TMEM260-215ENST00000557626 MROH2BQ7Z745 1585 aa26.75■■□□□ 1.87
TMEM260-215ENST00000557626 URB2Q14146 1524 aaKnown RBP26.73■■□□□ 1.87
TMEM260-215ENST00000557626 ZNF608Q9ULD9 1512 aaPredicted RBP26.63■■□□□ 1.85
TMEM260-215ENST00000557626 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
TMEM260-215ENST00000557626 ILDR1Q86SU0 546 aaPredicted RBP26.54■■□□□ 1.84
TMEM260-215ENST00000557626 CFTRP13569 1480 aa26.54■■□□□ 1.84
TMEM260-215ENST00000557626 IFT140Q96RY7 1462 aa26.54■■□□□ 1.84
TMEM260-215ENST00000557626 CHD1O14646 1710 aa26.53■■□□□ 1.84
TMEM260-215ENST00000557626 EIF4G3O43432 1585 aaKnown RBP26.45■■□□□ 1.82
TMEM260-215ENST00000557626 WIZO95785 1651 aa26.38■■□□□ 1.81
TMEM260-215ENST00000557626 FBLN2P98095 1184 aa26.34■■□□□ 1.81
TMEM260-215ENST00000557626 PRDM2Q13029 1718 aa26.23■■□□□ 1.79
TMEM260-215ENST00000557626 AQRO60306 1485 aaKnown RBP eCLIP26.2■■□□□ 1.78
TMEM260-215ENST00000557626 TOPBP1Q92547 1522 aa26.19■■□□□ 1.78
TMEM260-215ENST00000557626 CLASP1Q7Z460 1538 aa26.16■■□□□ 1.78
TMEM260-215ENST00000557626 TARBP1Q13395 1621 aaKnown RBP26.07■■□□□ 1.76
TMEM260-215ENST00000557626 SYNJ1O43426 1573 aa26.03■■□□□ 1.76
TMEM260-215ENST00000557626 ABCC8Q09428 1581 aa26.03■■□□□ 1.76
TMEM260-215ENST00000557626 GAPVD1Q14C86 1478 aa26■■□□□ 1.75
TMEM260-215ENST00000557626 DNMBPQ6XZF7 1577 aa25.99■■□□□ 1.75
TMEM260-215ENST00000557626 TOP2AP11388 1531 aaKnown RBP25.94■■□□□ 1.74
TMEM260-215ENST00000557626 SNAPC4Q5SXM2 1469 aa25.92■■□□□ 1.74
TMEM260-215ENST00000557626 CHMP7Q8WUX9 453 aaPredicted RBP25.9■■□□□ 1.74
TMEM260-215ENST00000557626 KDM4FA0A1W2PPD8 638 aa25.85■■□□□ 1.73
TMEM260-215ENST00000557626 POLA1P09884 1462 aaPredicted RBP25.84■■□□□ 1.73
TMEM260-215ENST00000557626 KIF13AQ9H1H9 1805 aa25.83■■□□□ 1.73
TMEM260-215ENST00000557626 TDRD9Q8NDG6 1382 aaKnown RBP25.82■■□□□ 1.72
TMEM260-215ENST00000557626 MAGI1Q96QZ7 1491 aaPredicted RBP25.79■■□□□ 1.72
TMEM260-215ENST00000557626 RAD54L2Q9Y4B4 1467 aa25.76■■□□□ 1.71
TMEM260-215ENST00000557626 SYNJ2O15056 1496 aa25.72■■□□□ 1.71
TMEM260-215ENST00000557626 WDR97A6NE52 1622 aa25.72■■□□□ 1.71
TMEM260-215ENST00000557626 SOGA1O94964 1423 aa25.68■■□□□ 1.7
TMEM260-215ENST00000557626 CCDC88BA6NC98 1476 aa25.64■■□□□ 1.69
TMEM260-215ENST00000557626 ERCC6L2Q5T890 1561 aa25.64■■□□□ 1.69
TMEM260-215ENST00000557626 GRIN2BQ13224 1484 aa25.63■■□□□ 1.69
TMEM260-215ENST00000557626 KDM6BO15054 1643 aa25.55■■□□□ 1.68
TMEM260-215ENST00000557626 FAM69CQ0P6D2 419 aa25.5■■□□□ 1.67
TMEM260-215ENST00000557626 PBRM1Q86U86 1689 aa25.48■■□□□ 1.67
TMEM260-215ENST00000557626 HECW2Q9P2P5 1572 aa25.48■■□□□ 1.67
TMEM260-215ENST00000557626 CEP170Q5SW79 1584 aa25.48■■□□□ 1.67
TMEM260-215ENST00000557626 FGD5Q6ZNL6 1462 aa25.47■■□□□ 1.67
TMEM260-215ENST00000557626 ABCC10Q5T3U5 1492 aa25.46■■□□□ 1.67
TMEM260-215ENST00000557626 FBXO41Q8TF61 875 aa25.42■■□□□ 1.66
TMEM260-215ENST00000557626 DIP2BQ9P265 1576 aa25.37■■□□□ 1.65
TMEM260-215ENST00000557626 ADGRL1O94910 1474 aa25.36■■□□□ 1.65
TMEM260-215ENST00000557626 SHROOM2Q13796 1616 aa25.33■■□□□ 1.65
TMEM260-215ENST00000557626 TSPOAP1O95153 1857 aa25.32■■□□□ 1.64
TMEM260-215ENST00000557626 GRIN2AQ12879 1464 aa25.31■■□□□ 1.64
TMEM260-215ENST00000557626 MAPKBP1O60336 1514 aa25.3■■□□□ 1.64
TMEM260-215ENST00000557626 NUP160Q12769 1436 aa25.26■■□□□ 1.63
TMEM260-215ENST00000557626 NPM1P06748 294 aaKnown RBP eCLIP25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms