RNA–Protein interactions for RNA: ENST00000557599.5

PRKCH-227, Transcript of protein kinase C eta, humanhuman

TSL 3

Gene PRKCH, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-227ENST00000557599 NISCHQ9Y2I1 1504 aa25.53■■□□□ 1.68
PRKCH-227ENST00000557599 CCDC180Q9P1Z9 1646 aa23.01■■□□□ 1.27
PRKCH-227ENST00000557599 ABCC9O60706 1549 aa22.73■■□□□ 1.23
PRKCH-227ENST00000557599 RB1CC1Q8TDY2 1594 aa21.77■■□□□ 1.08
PRKCH-227ENST00000557599 NACADO15069 1562 aa21.66■■□□□ 1.06
PRKCH-227ENST00000557599 MYO15BQ96JP2 1530 aa21.49■■□□□ 1.03
PRKCH-227ENST00000557599 UNC13AQ9UPW8 1703 aa21.4■■□□□ 1.02
PRKCH-227ENST00000557599 DNAJC5BQ9UF47 199 aa21.31■■□□□ 1
PRKCH-227ENST00000557599 BICRAQ9NZM4 1560 aa21.23■□□□□ 0.99
PRKCH-227ENST00000557599 ZCCHC6Q5VYS8 1495 aaKnown RBP21.21■□□□□ 0.99
PRKCH-227ENST00000557599 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
PRKCH-227ENST00000557599 DCAF8L2P0C7V8 631 aa21.09■□□□□ 0.97
PRKCH-227ENST00000557599 PABPN1Q86U42 306 aaKnown RBP eCLIP21.05■□□□□ 0.96
PRKCH-227ENST00000557599 SHROOM4Q9ULL8 1493 aa20.99■□□□□ 0.95
PRKCH-227ENST00000557599 SCRIBQ14160 1630 aa20.79■□□□□ 0.92
PRKCH-227ENST00000557599 CC2D2AQ9P2K1 1620 aa20.65■□□□□ 0.9
PRKCH-227ENST00000557599 EIF4G1Q04637 1599 aaKnown RBP20.64■□□□□ 0.9
PRKCH-227ENST00000557599 CECR2Q9BXF3 1484 aa20.51■□□□□ 0.87
PRKCH-227ENST00000557599 NCAPD3P42695 1498 aa19.99■□□□□ 0.79
PRKCH-227ENST00000557599 SMARCA4P51532 1647 aa19.93■□□□□ 0.78
PRKCH-227ENST00000557599 ATAD2BQ9ULI0 1458 aa19.9■□□□□ 0.78
PRKCH-227ENST00000557599 HMGXB3Q12766 1538 aa19.89■□□□□ 0.77
PRKCH-227ENST00000557599 SMARCA2P51531 1590 aa19.85■□□□□ 0.77
PRKCH-227ENST00000557599 PEG3Q9GZU2 1588 aa19.84■□□□□ 0.77
PRKCH-227ENST00000557599 BAZ1AQ9NRL2 1556 aaPredicted RBP19.8■□□□□ 0.76
PRKCH-227ENST00000557599 CUX2O14529 1486 aa19.69■□□□□ 0.74
PRKCH-227ENST00000557599 BAZ1BQ9UIG0 1483 aaKnown RBP19.65■□□□□ 0.74
PRKCH-227ENST00000557599 MROH2BQ7Z745 1585 aa19.65■□□□□ 0.74
PRKCH-227ENST00000557599 NESP48681 1621 aa19.58■□□□□ 0.73
PRKCH-227ENST00000557599 ERCC6Q03468 1493 aa19.57■□□□□ 0.72
PRKCH-227ENST00000557599 LAMC3Q9Y6N6 1575 aa19.54■□□□□ 0.72
PRKCH-227ENST00000557599 THOC2Q8NI27 1593 aaKnown RBP19.53■□□□□ 0.72
PRKCH-227ENST00000557599 DNAJC5Q9H3Z4 198 aa19.53■□□□□ 0.72
PRKCH-227ENST00000557599 KIF21AQ7Z4S6 1674 aa19.43■□□□□ 0.7
PRKCH-227ENST00000557599 WIZO95785 1651 aa19.41■□□□□ 0.7
PRKCH-227ENST00000557599 PDS5BQ9NTI5 1447 aa19.31■□□□□ 0.68
PRKCH-227ENST00000557599 CADPSQ9ULU8 1353 aa19.29■□□□□ 0.68
PRKCH-227ENST00000557599 WDR62O43379 1518 aa19.24■□□□□ 0.67
PRKCH-227ENST00000557599 RSF1Q96T23 1441 aaPredicted RBP19.22■□□□□ 0.67
PRKCH-227ENST00000557599 TOP2AP11388 1531 aaKnown RBP19.2■□□□□ 0.66
PRKCH-227ENST00000557599 MRC2Q9UBG0 1479 aa19.19■□□□□ 0.66
PRKCH-227ENST00000557599 CFTRP13569 1480 aa19.16■□□□□ 0.66
PRKCH-227ENST00000557599 CEP164Q9UPV0 1460 aa19.1■□□□□ 0.65
PRKCH-227ENST00000557599 FANCD2Q9BXW9 1451 aa19.08■□□□□ 0.64
PRKCH-227ENST00000557599 PRDM2Q13029 1718 aa19.08■□□□□ 0.64
PRKCH-227ENST00000557599 URB2Q14146 1524 aaKnown RBP18.98■□□□□ 0.63
PRKCH-227ENST00000557599 CCDC88BA6NC98 1476 aa18.91■□□□□ 0.62
PRKCH-227ENST00000557599 TOPBP1Q92547 1522 aa18.76■□□□□ 0.59
PRKCH-227ENST00000557599 IFT140Q96RY7 1462 aa18.73■□□□□ 0.59
PRKCH-227ENST00000557599 DNMBPQ6XZF7 1577 aa18.72■□□□□ 0.59
PRKCH-227ENST00000557599 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
PRKCH-227ENST00000557599 ZNF608Q9ULD9 1512 aaPredicted RBP18.69■□□□□ 0.58
PRKCH-227ENST00000557599 TARBP1Q13395 1621 aaKnown RBP18.68■□□□□ 0.58
PRKCH-227ENST00000557599 EIF4G3O43432 1585 aaKnown RBP18.68■□□□□ 0.58
PRKCH-227ENST00000557599 SUPT5HO00267 1087 aaKnown RBP18.65■□□□□ 0.58
PRKCH-227ENST00000557599 OSCARQ8IYS5 282 aa18.6■□□□□ 0.57
PRKCH-227ENST00000557599 POLA1P09884 1462 aaPredicted RBP18.58■□□□□ 0.57
PRKCH-227ENST00000557599 RIMBP3CA6NJZ7 1639 aa18.55■□□□□ 0.56
PRKCH-227ENST00000557599 RIMBP3BA6NNM3 1639 aa18.55■□□□□ 0.56
PRKCH-227ENST00000557599 RIMBP3Q9UFD9 1639 aa18.55■□□□□ 0.56
PRKCH-227ENST00000557599 WDR97A6NE52 1622 aa18.53■□□□□ 0.56
PRKCH-227ENST00000557599 CHD1O14646 1710 aa18.51■□□□□ 0.55
PRKCH-227ENST00000557599 TRIM41Q8WV44 630 aa18.49■□□□□ 0.55
PRKCH-227ENST00000557599 ARHGEF11O15085 1522 aa18.48■□□□□ 0.55
PRKCH-227ENST00000557599 AQRO60306 1485 aaKnown RBP eCLIP18.47■□□□□ 0.55
PRKCH-227ENST00000557599 CUX1P39880 1505 aa18.46■□□□□ 0.55
PRKCH-227ENST00000557599 FGD5Q6ZNL6 1462 aa18.43■□□□□ 0.54
PRKCH-227ENST00000557599 RAD54L2Q9Y4B4 1467 aa18.43■□□□□ 0.54
PRKCH-227ENST00000557599 SOGA1O94964 1423 aa18.39■□□□□ 0.53
PRKCH-227ENST00000557599 CLASP1Q7Z460 1538 aa18.35■□□□□ 0.53
PRKCH-227ENST00000557599 MAGI1Q96QZ7 1491 aaPredicted RBP18.33■□□□□ 0.53
PRKCH-227ENST00000557599 SNAPC4Q5SXM2 1469 aa18.33■□□□□ 0.52
PRKCH-227ENST00000557599 ABCA5Q8WWZ7 1642 aa18.32■□□□□ 0.52
PRKCH-227ENST00000557599 PBRM1Q86U86 1689 aa18.31■□□□□ 0.52
PRKCH-227ENST00000557599 TDRD9Q8NDG6 1382 aaKnown RBP18.31■□□□□ 0.52
PRKCH-227ENST00000557599 ARAP1Q96P48 1450 aa18.3■□□□□ 0.52
PRKCH-227ENST00000557599 GRIN2BQ13224 1484 aa18.29■□□□□ 0.52
PRKCH-227ENST00000557599 ABCA10Q8WWZ4 1543 aa18.28■□□□□ 0.52
PRKCH-227ENST00000557599 BIVM-ERCC5R4GMW8 1640 aa18.26■□□□□ 0.51
PRKCH-227ENST00000557599 SYNJ2O15056 1496 aa18.25■□□□□ 0.51
PRKCH-227ENST00000557599 SYNJ1O43426 1573 aa18.25■□□□□ 0.51
PRKCH-227ENST00000557599 TOP2BQ02880 1626 aa18.21■□□□□ 0.51
PRKCH-227ENST00000557599 GAPVD1Q14C86 1478 aa18.2■□□□□ 0.5
PRKCH-227ENST00000557599 ADAMTS12P58397 1594 aa18.13■□□□□ 0.49
PRKCH-227ENST00000557599 FBLN2P98095 1184 aa18.13■□□□□ 0.49
PRKCH-227ENST00000557599 CYB5RLQ6IPT4 315 aa18.11■□□□□ 0.49
PRKCH-227ENST00000557599 WRNQ14191 1432 aaPredicted RBP eCLIP18.1■□□□□ 0.49
PRKCH-227ENST00000557599 GRIN2AQ12879 1464 aa18.08■□□□□ 0.49
PRKCH-227ENST00000557599 CHMP7Q8WUX9 453 aaPredicted RBP18.08■□□□□ 0.48
PRKCH-227ENST00000557599 NUP160Q12769 1436 aa18.06■□□□□ 0.48
PRKCH-227ENST00000557599 SHROOM2Q13796 1616 aa18.06■□□□□ 0.48
PRKCH-227ENST00000557599 CEP170Q5SW79 1584 aa18.06■□□□□ 0.48
PRKCH-227ENST00000557599 ERICH3Q5RHP9 1530 aa18.06■□□□□ 0.48
PRKCH-227ENST00000557599 ERCC6L2Q5T890 1561 aa18■□□□□ 0.47
PRKCH-227ENST00000557599 FHAD1B1AJZ9 1412 aa17.99■□□□□ 0.47
PRKCH-227ENST00000557599 RUSC2Q8N2Y8 1516 aa17.91■□□□□ 0.46
PRKCH-227ENST00000557599 CUL7Q14999 1698 aa17.81■□□□□ 0.44
PRKCH-227ENST00000557599 TRHP20396 242 aaPredicted RBP17.81■□□□□ 0.44
PRKCH-227ENST00000557599 KIF13AQ9H1H9 1805 aa17.77■□□□□ 0.43
PRKCH-227ENST00000557599 PRG4Q92954 1404 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms