RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 NISCHQ9Y2I1 1504 aa21.08■□□□□ 0.96
CCDC88C-214ENST00000557507 ABCC9O60706 1549 aa19.25■□□□□ 0.67
CCDC88C-214ENST00000557507 CCDC180Q9P1Z9 1646 aa19.13■□□□□ 0.65
CCDC88C-214ENST00000557507 RB1CC1Q8TDY2 1594 aa18.24■□□□□ 0.51
CCDC88C-214ENST00000557507 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
CCDC88C-214ENST00000557507 NACADO15069 1562 aa18.04■□□□□ 0.48
CCDC88C-214ENST00000557507 UNC13AQ9UPW8 1703 aa18.02■□□□□ 0.48
CCDC88C-214ENST00000557507 PABPN1Q86U42 306 aaKnown RBP eCLIP17.8■□□□□ 0.44
CCDC88C-214ENST00000557507 BICRAQ9NZM4 1560 aa17.78■□□□□ 0.44
CCDC88C-214ENST00000557507 DCAF8L2P0C7V8 631 aa17.74■□□□□ 0.43
CCDC88C-214ENST00000557507 MYO15BQ96JP2 1530 aa17.7■□□□□ 0.42
CCDC88C-214ENST00000557507 ZCCHC6Q5VYS8 1495 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-214ENST00000557507 CC2D2AQ9P2K1 1620 aa17.43■□□□□ 0.38
CCDC88C-214ENST00000557507 SHROOM4Q9ULL8 1493 aa17.43■□□□□ 0.38
CCDC88C-214ENST00000557507 DCAF1Q9Y4B6 1507 aa17.4■□□□□ 0.38
CCDC88C-214ENST00000557507 SCRIBQ14160 1630 aa17.39■□□□□ 0.37
CCDC88C-214ENST00000557507 CECR2Q9BXF3 1484 aa17.35■□□□□ 0.37
CCDC88C-214ENST00000557507 EIF4G1Q04637 1599 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-214ENST00000557507 DNAJC5Q9H3Z4 198 aa16.84■□□□□ 0.29
CCDC88C-214ENST00000557507 CUX2O14529 1486 aa16.67■□□□□ 0.26
CCDC88C-214ENST00000557507 NCAPD3P42695 1498 aa16.61■□□□□ 0.25
CCDC88C-214ENST00000557507 ERCC6Q03468 1493 aa16.61■□□□□ 0.25
CCDC88C-214ENST00000557507 SMARCA4P51532 1647 aa16.56■□□□□ 0.24
CCDC88C-214ENST00000557507 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
CCDC88C-214ENST00000557507 HMGXB3Q12766 1538 aa16.54■□□□□ 0.24
CCDC88C-214ENST00000557507 SMARCA2P51531 1590 aa16.51■□□□□ 0.23
CCDC88C-214ENST00000557507 NESP48681 1621 aa16.49■□□□□ 0.23
CCDC88C-214ENST00000557507 THOC2Q8NI27 1593 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-214ENST00000557507 KIF21AQ7Z4S6 1674 aa16.39■□□□□ 0.21
CCDC88C-214ENST00000557507 BAZ1AQ9NRL2 1556 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-214ENST00000557507 BAZ1BQ9UIG0 1483 aaKnown RBP16.38■□□□□ 0.21
CCDC88C-214ENST00000557507 PEG3Q9GZU2 1588 aa16.38■□□□□ 0.21
CCDC88C-214ENST00000557507 LAMC3Q9Y6N6 1575 aa16.34■□□□□ 0.21
CCDC88C-214ENST00000557507 MROH2BQ7Z745 1585 aa16.26■□□□□ 0.19
CCDC88C-214ENST00000557507 PDS5BQ9NTI5 1447 aa16.16■□□□□ 0.18
CCDC88C-214ENST00000557507 WIZO95785 1651 aa16.11■□□□□ 0.17
CCDC88C-214ENST00000557507 WDR62O43379 1518 aa16.11■□□□□ 0.17
CCDC88C-214ENST00000557507 MRC2Q9UBG0 1479 aa16.1■□□□□ 0.17
CCDC88C-214ENST00000557507 CADPSQ9ULU8 1353 aa16.06■□□□□ 0.16
CCDC88C-214ENST00000557507 TRIM41Q8WV44 630 aa16.01■□□□□ 0.15
CCDC88C-214ENST00000557507 CEP164Q9UPV0 1460 aa15.98■□□□□ 0.15
CCDC88C-214ENST00000557507 FANCD2Q9BXW9 1451 aa15.94■□□□□ 0.14
CCDC88C-214ENST00000557507 PRDM2Q13029 1718 aa15.92■□□□□ 0.14
CCDC88C-214ENST00000557507 CFTRP13569 1480 aa15.88■□□□□ 0.13
CCDC88C-214ENST00000557507 URB2Q14146 1524 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-214ENST00000557507 TOP2AP11388 1531 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-214ENST00000557507 RSF1Q96T23 1441 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-214ENST00000557507 RIMBP3CA6NJZ7 1639 aa15.78■□□□□ 0.12
CCDC88C-214ENST00000557507 RIMBP3BA6NNM3 1639 aa15.78■□□□□ 0.12
CCDC88C-214ENST00000557507 RIMBP3Q9UFD9 1639 aa15.78■□□□□ 0.12
CCDC88C-214ENST00000557507 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
CCDC88C-214ENST00000557507 ZNF608Q9ULD9 1512 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-214ENST00000557507 EIF4G3O43432 1585 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-214ENST00000557507 CHD1O14646 1710 aa15.65■□□□□ 0.1
CCDC88C-214ENST00000557507 IFT140Q96RY7 1462 aa15.65■□□□□ 0.1
CCDC88C-214ENST00000557507 ARHGEF11O15085 1522 aa15.65■□□□□ 0.1
CCDC88C-214ENST00000557507 TOPBP1Q92547 1522 aa15.63■□□□□ 0.09
CCDC88C-214ENST00000557507 CCDC88BA6NC98 1476 aa15.62■□□□□ 0.09
CCDC88C-214ENST00000557507 DNMBPQ6XZF7 1577 aa15.58■□□□□ 0.09
CCDC88C-214ENST00000557507 TARBP1Q13395 1621 aaKnown RBP15.57■□□□□ 0.08
CCDC88C-214ENST00000557507 ABCC8Q09428 1581 aa15.52■□□□□ 0.07
CCDC88C-214ENST00000557507 ARAP1Q96P48 1450 aa15.48■□□□□ 0.07
CCDC88C-214ENST00000557507 AQRO60306 1485 aaKnown RBP eCLIP15.47■□□□□ 0.07
CCDC88C-214ENST00000557507 POLA1P09884 1462 aaPredicted RBP15.46■□□□□ 0.06
CCDC88C-214ENST00000557507 CYB5RLQ6IPT4 315 aa15.43■□□□□ 0.06
CCDC88C-214ENST00000557507 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
CCDC88C-214ENST00000557507 CLASP1Q7Z460 1538 aa15.38■□□□□ 0.05
CCDC88C-214ENST00000557507 WDR97A6NE52 1622 aa15.37■□□□□ 0.05
CCDC88C-214ENST00000557507 SNAPC4Q5SXM2 1469 aa15.35■□□□□ 0.05
CCDC88C-214ENST00000557507 FBLN2P98095 1184 aa15.34■□□□□ 0.05
CCDC88C-214ENST00000557507 FGD5Q6ZNL6 1462 aa15.33■□□□□ 0.05
CCDC88C-214ENST00000557507 PBRM1Q86U86 1689 aa15.33■□□□□ 0.04
CCDC88C-214ENST00000557507 TDRD9Q8NDG6 1382 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-214ENST00000557507 SYNJ1O43426 1573 aa15.32■□□□□ 0.04
CCDC88C-214ENST00000557507 TRHP20396 242 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-214ENST00000557507 SOGA1O94964 1423 aa15.31■□□□□ 0.04
CCDC88C-214ENST00000557507 CUX1P39880 1505 aa15.3■□□□□ 0.04
CCDC88C-214ENST00000557507 MAGI1Q96QZ7 1491 aaPredicted RBP15.28■□□□□ 0.04
CCDC88C-214ENST00000557507 GRIN2BQ13224 1484 aa15.24■□□□□ 0.03
CCDC88C-214ENST00000557507 SYNJ2O15056 1496 aa15.23■□□□□ 0.03
CCDC88C-214ENST00000557507 ABCA5Q8WWZ7 1642 aa15.21■□□□□ 0.03
CCDC88C-214ENST00000557507 CHMP7Q8WUX9 453 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-214ENST00000557507 GAPVD1Q14C86 1478 aa15.16■□□□□ 0.02
CCDC88C-214ENST00000557507 ERCC6L2Q5T890 1561 aa15.14■□□□□ 0.01
CCDC88C-214ENST00000557507 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
CCDC88C-214ENST00000557507 ADAMTS12P58397 1594 aa15.11■□□□□ 0.01
CCDC88C-214ENST00000557507 CEP170Q5SW79 1584 aa15.09■□□□□ 0.01
CCDC88C-214ENST00000557507 GRIN2AQ12879 1464 aa15.08■□□□□ 0
CCDC88C-214ENST00000557507 KIF13AQ9H1H9 1805 aa15.07■□□□□ 0
CCDC88C-214ENST00000557507 SHROOM2Q13796 1616 aa15.06■□□□□ 0
CCDC88C-214ENST00000557507 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
CCDC88C-214ENST00000557507 NUP160Q12769 1436 aa15.02■□□□□ -0
CCDC88C-214ENST00000557507 AEBP2Q6ZN18 517 aaPredicted RBP15.02■□□□□ -0
CCDC88C-214ENST00000557507 TOP2BQ02880 1626 aa15.01□□□□□ -0.01
CCDC88C-214ENST00000557507 WRNQ14191 1432 aaPredicted RBP eCLIP14.96□□□□□ -0.01
CCDC88C-214ENST00000557507 FHAD1B1AJZ9 1412 aa14.94□□□□□ -0.02
CCDC88C-214ENST00000557507 ERICH3Q5RHP9 1530 aa14.94□□□□□ -0.02
CCDC88C-214ENST00000557507 RUSC2Q8N2Y8 1516 aa14.92□□□□□ -0.02
CCDC88C-214ENST00000557507 PRG4Q92954 1404 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-214ENST00000557507 DIP2BQ9P265 1576 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms