RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 NISCHQ9Y2I1 1504 aa27.65■■■□□ 2.02
CCDC88C-213ENST00000557455 CCDC180Q9P1Z9 1646 aa24.83■■□□□ 1.56
CCDC88C-213ENST00000557455 ABCC9O60706 1549 aa24.74■■□□□ 1.55
CCDC88C-213ENST00000557455 RB1CC1Q8TDY2 1594 aa23.6■■□□□ 1.37
CCDC88C-213ENST00000557455 NACADO15069 1562 aa23.44■■□□□ 1.34
CCDC88C-213ENST00000557455 DCAF8L2P0C7V8 631 aa23.34■■□□□ 1.33
CCDC88C-213ENST00000557455 DNAJC5BQ9UF47 199 aa23.12■■□□□ 1.29
CCDC88C-213ENST00000557455 MYO15BQ96JP2 1530 aa23.11■■□□□ 1.29
CCDC88C-213ENST00000557455 UNC13AQ9UPW8 1703 aa23.11■■□□□ 1.29
CCDC88C-213ENST00000557455 PABPN1Q86U42 306 aaKnown RBP eCLIP23.03■■□□□ 1.28
CCDC88C-213ENST00000557455 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
CCDC88C-213ENST00000557455 BICRAQ9NZM4 1560 aa22.88■■□□□ 1.25
CCDC88C-213ENST00000557455 DCAF1Q9Y4B6 1507 aa22.84■■□□□ 1.25
CCDC88C-213ENST00000557455 SCRIBQ14160 1630 aa22.61■■□□□ 1.21
CCDC88C-213ENST00000557455 SHROOM4Q9ULL8 1493 aa22.58■■□□□ 1.2
CCDC88C-213ENST00000557455 CC2D2AQ9P2K1 1620 aa22.36■■□□□ 1.17
CCDC88C-213ENST00000557455 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.16
CCDC88C-213ENST00000557455 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
CCDC88C-213ENST00000557455 NCAPD3P42695 1498 aa21.61■■□□□ 1.05
CCDC88C-213ENST00000557455 SMARCA4P51532 1647 aa21.58■■□□□ 1.04
CCDC88C-213ENST00000557455 ATAD2BQ9ULI0 1458 aa21.56■■□□□ 1.04
CCDC88C-213ENST00000557455 SMARCA2P51531 1590 aa21.53■■□□□ 1.04
CCDC88C-213ENST00000557455 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
CCDC88C-213ENST00000557455 HMGXB3Q12766 1538 aa21.47■■□□□ 1.03
CCDC88C-213ENST00000557455 ERCC6Q03468 1493 aa21.37■■□□□ 1.01
CCDC88C-213ENST00000557455 BAZ1BQ9UIG0 1483 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-213ENST00000557455 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
CCDC88C-213ENST00000557455 CUX2O14529 1486 aa21.3■■□□□ 1
CCDC88C-213ENST00000557455 MROH2BQ7Z745 1585 aa21.3■■□□□ 1
CCDC88C-213ENST00000557455 NESP48681 1621 aa21.26■□□□□ 0.99
CCDC88C-213ENST00000557455 DNAJC5Q9H3Z4 198 aa21.21■□□□□ 0.99
CCDC88C-213ENST00000557455 LAMC3Q9Y6N6 1575 aa21.15■□□□□ 0.98
CCDC88C-213ENST00000557455 WIZO95785 1651 aa21.08■□□□□ 0.96
CCDC88C-213ENST00000557455 THOC2Q8NI27 1593 aaKnown RBP21.05■□□□□ 0.96
CCDC88C-213ENST00000557455 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
CCDC88C-213ENST00000557455 PDS5BQ9NTI5 1447 aa21.01■□□□□ 0.95
CCDC88C-213ENST00000557455 CADPSQ9ULU8 1353 aa20.96■□□□□ 0.95
CCDC88C-213ENST00000557455 RSF1Q96T23 1441 aaPredicted RBP20.87■□□□□ 0.93
CCDC88C-213ENST00000557455 MRC2Q9UBG0 1479 aa20.82■□□□□ 0.92
CCDC88C-213ENST00000557455 TOP2AP11388 1531 aaKnown RBP20.8■□□□□ 0.92
CCDC88C-213ENST00000557455 WDR62O43379 1518 aa20.77■□□□□ 0.92
CCDC88C-213ENST00000557455 CEP164Q9UPV0 1460 aa20.76■□□□□ 0.91
CCDC88C-213ENST00000557455 CFTRP13569 1480 aa20.73■□□□□ 0.91
CCDC88C-213ENST00000557455 FANCD2Q9BXW9 1451 aa20.73■□□□□ 0.91
CCDC88C-213ENST00000557455 PRDM2Q13029 1718 aa20.62■□□□□ 0.89
CCDC88C-213ENST00000557455 CCDC88BA6NC98 1476 aa20.56■□□□□ 0.88
CCDC88C-213ENST00000557455 URB2Q14146 1524 aaKnown RBP20.55■□□□□ 0.88
CCDC88C-213ENST00000557455 TOPBP1Q92547 1522 aa20.35■□□□□ 0.85
CCDC88C-213ENST00000557455 OSCARQ8IYS5 282 aa20.34■□□□□ 0.85
CCDC88C-213ENST00000557455 IFT140Q96RY7 1462 aa20.33■□□□□ 0.85
CCDC88C-213ENST00000557455 TRIM41Q8WV44 630 aa20.33■□□□□ 0.85
CCDC88C-213ENST00000557455 ABCC8Q09428 1581 aa20.33■□□□□ 0.84
CCDC88C-213ENST00000557455 DNMBPQ6XZF7 1577 aa20.29■□□□□ 0.84
CCDC88C-213ENST00000557455 ZNF608Q9ULD9 1512 aaPredicted RBP20.28■□□□□ 0.84
CCDC88C-213ENST00000557455 EIF4G3O43432 1585 aaKnown RBP20.21■□□□□ 0.83
CCDC88C-213ENST00000557455 TARBP1Q13395 1621 aaKnown RBP20.17■□□□□ 0.82
CCDC88C-213ENST00000557455 POLA1P09884 1462 aaPredicted RBP20.14■□□□□ 0.81
CCDC88C-213ENST00000557455 AQRO60306 1485 aaKnown RBP eCLIP20.11■□□□□ 0.81
CCDC88C-213ENST00000557455 RIMBP3CA6NJZ7 1639 aa20.09■□□□□ 0.81
CCDC88C-213ENST00000557455 RIMBP3BA6NNM3 1639 aa20.09■□□□□ 0.81
CCDC88C-213ENST00000557455 RIMBP3Q9UFD9 1639 aa20.09■□□□□ 0.81
CCDC88C-213ENST00000557455 CHD1O14646 1710 aa20.07■□□□□ 0.8
CCDC88C-213ENST00000557455 RAD54L2Q9Y4B4 1467 aa20.06■□□□□ 0.8
CCDC88C-213ENST00000557455 SOGA1O94964 1423 aa20.05■□□□□ 0.8
CCDC88C-213ENST00000557455 FGD5Q6ZNL6 1462 aa20.03■□□□□ 0.8
CCDC88C-213ENST00000557455 SUPT5HO00267 1087 aaKnown RBP20.02■□□□□ 0.8
CCDC88C-213ENST00000557455 ARHGEF11O15085 1522 aa20.01■□□□□ 0.79
CCDC88C-213ENST00000557455 CUX1P39880 1505 aa20.01■□□□□ 0.79
CCDC88C-213ENST00000557455 TDRD9Q8NDG6 1382 aaKnown RBP19.99■□□□□ 0.79
CCDC88C-213ENST00000557455 FBLN2P98095 1184 aa19.99■□□□□ 0.79
CCDC88C-213ENST00000557455 WDR97A6NE52 1622 aa19.98■□□□□ 0.79
CCDC88C-213ENST00000557455 SNAPC4Q5SXM2 1469 aa19.92■□□□□ 0.78
CCDC88C-213ENST00000557455 GRIN2BQ13224 1484 aa19.87■□□□□ 0.77
CCDC88C-213ENST00000557455 MAGI1Q96QZ7 1491 aaPredicted RBP19.87■□□□□ 0.77
CCDC88C-213ENST00000557455 CYB5RLQ6IPT4 315 aa19.86■□□□□ 0.77
CCDC88C-213ENST00000557455 PBRM1Q86U86 1689 aa19.85■□□□□ 0.77
CCDC88C-213ENST00000557455 CHMP7Q8WUX9 453 aaPredicted RBP19.85■□□□□ 0.77
CCDC88C-213ENST00000557455 SYNJ1O43426 1573 aa19.82■□□□□ 0.76
CCDC88C-213ENST00000557455 GAPVD1Q14C86 1478 aa19.81■□□□□ 0.76
CCDC88C-213ENST00000557455 SYNJ2O15056 1496 aa19.8■□□□□ 0.76
CCDC88C-213ENST00000557455 ARAP1Q96P48 1450 aa19.8■□□□□ 0.76
CCDC88C-213ENST00000557455 CLASP1Q7Z460 1538 aa19.8■□□□□ 0.76
CCDC88C-213ENST00000557455 ABCA10Q8WWZ4 1543 aa19.8■□□□□ 0.76
CCDC88C-213ENST00000557455 ABCA5Q8WWZ7 1642 aa19.78■□□□□ 0.76
CCDC88C-213ENST00000557455 BIVM-ERCC5R4GMW8 1640 aa19.74■□□□□ 0.75
CCDC88C-213ENST00000557455 WRNQ14191 1432 aaPredicted RBP eCLIP19.74■□□□□ 0.75
CCDC88C-213ENST00000557455 TOP2BQ02880 1626 aa19.73■□□□□ 0.75
CCDC88C-213ENST00000557455 TRHP20396 242 aaPredicted RBP19.65■□□□□ 0.74
CCDC88C-213ENST00000557455 ADAMTS12P58397 1594 aa19.62■□□□□ 0.73
CCDC88C-213ENST00000557455 GRIN2AQ12879 1464 aa19.62■□□□□ 0.73
CCDC88C-213ENST00000557455 ERICH3Q5RHP9 1530 aa19.56■□□□□ 0.72
CCDC88C-213ENST00000557455 FHAD1B1AJZ9 1412 aa19.56■□□□□ 0.72
CCDC88C-213ENST00000557455 CEP170Q5SW79 1584 aa19.55■□□□□ 0.72
CCDC88C-213ENST00000557455 NUP160Q12769 1436 aa19.53■□□□□ 0.72
CCDC88C-213ENST00000557455 ERCC6L2Q5T890 1561 aa19.49■□□□□ 0.71
CCDC88C-213ENST00000557455 SHROOM2Q13796 1616 aa19.47■□□□□ 0.71
CCDC88C-213ENST00000557455 PRG4Q92954 1404 aaPredicted RBP19.35■□□□□ 0.69
CCDC88C-213ENST00000557455 JPH4Q96JJ6 628 aa19.35■□□□□ 0.69
CCDC88C-213ENST00000557455 RUSC2Q8N2Y8 1516 aa19.35■□□□□ 0.69
CCDC88C-213ENST00000557455 KIF27Q86VH2 1401 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms