RNA–Protein interactions for RNA: ENST00000557422.1

RTN1-208, Transcript of reticulon 1, humanhuman

TSL 3

Gene RTN1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-208ENST00000557422 NISCHQ9Y2I1 1504 aa31.13■■■□□ 2.57
RTN1-208ENST00000557422 ABCC9O60706 1549 aa28.51■■■□□ 2.15
RTN1-208ENST00000557422 CCDC180Q9P1Z9 1646 aa28.07■■■□□ 2.08
RTN1-208ENST00000557422 DNAJC5BQ9UF47 199 aa27.16■■□□□ 1.94
RTN1-208ENST00000557422 RB1CC1Q8TDY2 1594 aa26.93■■□□□ 1.9
RTN1-208ENST00000557422 NACADO15069 1562 aa26.66■■□□□ 1.86
RTN1-208ENST00000557422 PABPN1Q86U42 306 aaKnown RBP eCLIP26.51■■□□□ 1.83
RTN1-208ENST00000557422 DCAF8L2P0C7V8 631 aa26.48■■□□□ 1.83
RTN1-208ENST00000557422 UNC13AQ9UPW8 1703 aa26.31■■□□□ 1.8
RTN1-208ENST00000557422 BICRAQ9NZM4 1560 aa26.2■■□□□ 1.78
RTN1-208ENST00000557422 MYO15BQ96JP2 1530 aa26.15■■□□□ 1.78
RTN1-208ENST00000557422 SHROOM4Q9ULL8 1493 aa25.75■■□□□ 1.71
RTN1-208ENST00000557422 CECR2Q9BXF3 1484 aa25.72■■□□□ 1.71
RTN1-208ENST00000557422 CC2D2AQ9P2K1 1620 aa25.72■■□□□ 1.71
RTN1-208ENST00000557422 ZCCHC6Q5VYS8 1495 aaKnown RBP25.69■■□□□ 1.7
RTN1-208ENST00000557422 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
RTN1-208ENST00000557422 SCRIBQ14160 1630 aa25.56■■□□□ 1.68
RTN1-208ENST00000557422 EIF4G1Q04637 1599 aaKnown RBP25.56■■□□□ 1.68
RTN1-208ENST00000557422 DNAJC5Q9H3Z4 198 aa25.23■■□□□ 1.63
RTN1-208ENST00000557422 CUX2O14529 1486 aa24.72■■□□□ 1.55
RTN1-208ENST00000557422 NCAPD3P42695 1498 aa24.64■■□□□ 1.54
RTN1-208ENST00000557422 ERCC6Q03468 1493 aa24.63■■□□□ 1.53
RTN1-208ENST00000557422 ATAD2BQ9ULI0 1458 aa24.51■■□□□ 1.51
RTN1-208ENST00000557422 SMARCA2P51531 1590 aa24.39■■□□□ 1.5
RTN1-208ENST00000557422 HMGXB3Q12766 1538 aa24.39■■□□□ 1.49
RTN1-208ENST00000557422 NESP48681 1621 aa24.39■■□□□ 1.49
RTN1-208ENST00000557422 SMARCA4P51532 1647 aa24.35■■□□□ 1.49
RTN1-208ENST00000557422 BAZ1BQ9UIG0 1483 aaKnown RBP24.22■■□□□ 1.47
RTN1-208ENST00000557422 THOC2Q8NI27 1593 aaKnown RBP24.18■■□□□ 1.46
RTN1-208ENST00000557422 BAZ1AQ9NRL2 1556 aaPredicted RBP24.16■■□□□ 1.46
RTN1-208ENST00000557422 PEG3Q9GZU2 1588 aa24.12■■□□□ 1.45
RTN1-208ENST00000557422 LAMC3Q9Y6N6 1575 aa24.12■■□□□ 1.45
RTN1-208ENST00000557422 KIF21AQ7Z4S6 1674 aa24.02■■□□□ 1.44
RTN1-208ENST00000557422 PDS5BQ9NTI5 1447 aa24.01■■□□□ 1.43
RTN1-208ENST00000557422 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
RTN1-208ENST00000557422 TRIM41Q8WV44 630 aa23.94■■□□□ 1.42
RTN1-208ENST00000557422 CADPSQ9ULU8 1353 aa23.87■■□□□ 1.41
RTN1-208ENST00000557422 MRC2Q9UBG0 1479 aa23.82■■□□□ 1.4
RTN1-208ENST00000557422 WDR62O43379 1518 aa23.77■■□□□ 1.4
RTN1-208ENST00000557422 WIZO95785 1651 aa23.67■■□□□ 1.38
RTN1-208ENST00000557422 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.38
RTN1-208ENST00000557422 FANCD2Q9BXW9 1451 aa23.59■■□□□ 1.37
RTN1-208ENST00000557422 OSCARQ8IYS5 282 aa23.57■■□□□ 1.36
RTN1-208ENST00000557422 CFTRP13569 1480 aa23.51■■□□□ 1.35
RTN1-208ENST00000557422 URB2Q14146 1524 aaKnown RBP23.43■■□□□ 1.34
RTN1-208ENST00000557422 RSF1Q96T23 1441 aaPredicted RBP23.35■■□□□ 1.33
RTN1-208ENST00000557422 TOP2AP11388 1531 aaKnown RBP23.33■■□□□ 1.32
RTN1-208ENST00000557422 RIMBP3CA6NJZ7 1639 aa23.26■■□□□ 1.31
RTN1-208ENST00000557422 RIMBP3BA6NNM3 1639 aa23.26■■□□□ 1.31
RTN1-208ENST00000557422 RIMBP3Q9UFD9 1639 aa23.26■■□□□ 1.31
RTN1-208ENST00000557422 ZNF608Q9ULD9 1512 aaPredicted RBP23.21■■□□□ 1.31
RTN1-208ENST00000557422 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
RTN1-208ENST00000557422 IFT140Q96RY7 1462 aa23.18■■□□□ 1.3
RTN1-208ENST00000557422 ARHGEF11O15085 1522 aa23.15■■□□□ 1.3
RTN1-208ENST00000557422 CCDC88BA6NC98 1476 aa23.11■■□□□ 1.29
RTN1-208ENST00000557422 TOPBP1Q92547 1522 aa23.1■■□□□ 1.29
RTN1-208ENST00000557422 CYB5RLQ6IPT4 315 aa23.05■■□□□ 1.28
RTN1-208ENST00000557422 EIF4G3O43432 1585 aaKnown RBP23.02■■□□□ 1.28
RTN1-208ENST00000557422 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
RTN1-208ENST00000557422 AQRO60306 1485 aaKnown RBP eCLIP22.96■■□□□ 1.27
RTN1-208ENST00000557422 DNMBPQ6XZF7 1577 aa22.96■■□□□ 1.27
RTN1-208ENST00000557422 CHD1O14646 1710 aa22.93■■□□□ 1.26
RTN1-208ENST00000557422 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
RTN1-208ENST00000557422 TRHP20396 242 aaPredicted RBP22.91■■□□□ 1.26
RTN1-208ENST00000557422 ARAP1Q96P48 1450 aa22.91■■□□□ 1.26
RTN1-208ENST00000557422 FBLN2P98095 1184 aa22.89■■□□□ 1.25
RTN1-208ENST00000557422 POLA1P09884 1462 aaPredicted RBP22.84■■□□□ 1.25
RTN1-208ENST00000557422 RAD54L2Q9Y4B4 1467 aa22.77■■□□□ 1.24
RTN1-208ENST00000557422 TDRD9Q8NDG6 1382 aaKnown RBP22.76■■□□□ 1.23
RTN1-208ENST00000557422 SOGA1O94964 1423 aa22.74■■□□□ 1.23
RTN1-208ENST00000557422 SNAPC4Q5SXM2 1469 aa22.68■■□□□ 1.22
RTN1-208ENST00000557422 CLASP1Q7Z460 1538 aa22.67■■□□□ 1.22
RTN1-208ENST00000557422 CHMP7Q8WUX9 453 aaPredicted RBP22.65■■□□□ 1.22
RTN1-208ENST00000557422 FGD5Q6ZNL6 1462 aa22.63■■□□□ 1.21
RTN1-208ENST00000557422 WDR97A6NE52 1622 aa22.63■■□□□ 1.21
RTN1-208ENST00000557422 MAGI1Q96QZ7 1491 aaPredicted RBP22.6■■□□□ 1.21
RTN1-208ENST00000557422 SYNJ1O43426 1573 aa22.6■■□□□ 1.21
RTN1-208ENST00000557422 GRIN2BQ13224 1484 aa22.58■■□□□ 1.2
RTN1-208ENST00000557422 CUX1P39880 1505 aa22.56■■□□□ 1.2
RTN1-208ENST00000557422 SYNJ2O15056 1496 aa22.54■■□□□ 1.2
RTN1-208ENST00000557422 AEBP2Q6ZN18 517 aaPredicted RBP22.54■■□□□ 1.2
RTN1-208ENST00000557422 GAPVD1Q14C86 1478 aa22.47■■□□□ 1.19
RTN1-208ENST00000557422 PBRM1Q86U86 1689 aa22.42■■□□□ 1.18
RTN1-208ENST00000557422 ABCA10Q8WWZ4 1543 aa22.35■■□□□ 1.17
RTN1-208ENST00000557422 ABCA5Q8WWZ7 1642 aa22.34■■□□□ 1.17
RTN1-208ENST00000557422 ERCC6L2Q5T890 1561 aa22.31■■□□□ 1.16
RTN1-208ENST00000557422 GRIN2AQ12879 1464 aa22.28■■□□□ 1.16
RTN1-208ENST00000557422 NUP160Q12769 1436 aa22.23■■□□□ 1.15
RTN1-208ENST00000557422 CEP170Q5SW79 1584 aa22.23■■□□□ 1.15
RTN1-208ENST00000557422 WRNQ14191 1432 aaPredicted RBP eCLIP22.2■■□□□ 1.14
RTN1-208ENST00000557422 ADAMTS12P58397 1594 aa22.19■■□□□ 1.14
RTN1-208ENST00000557422 SHROOM2Q13796 1616 aa22.16■■□□□ 1.14
RTN1-208ENST00000557422 FHAD1B1AJZ9 1412 aa22.14■■□□□ 1.14
RTN1-208ENST00000557422 KIF13AQ9H1H9 1805 aa22.08■■□□□ 1.13
RTN1-208ENST00000557422 TOP2BQ02880 1626 aa22.07■■□□□ 1.12
RTN1-208ENST00000557422 BIVM-ERCC5R4GMW8 1640 aa22.06■■□□□ 1.12
RTN1-208ENST00000557422 ERICH3Q5RHP9 1530 aa22.06■■□□□ 1.12
RTN1-208ENST00000557422 PRG4Q92954 1404 aaPredicted RBP22.06■■□□□ 1.12
RTN1-208ENST00000557422 SUPT5HO00267 1087 aaKnown RBP22.03■■□□□ 1.12
RTN1-208ENST00000557422 JPH4Q96JJ6 628 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms