RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 NISCHQ9Y2I1 1504 aa33.4■■■□□ 2.94
VPS33B-206ENST00000557358 CCDC180Q9P1Z9 1646 aa29.78■■■□□ 2.36
VPS33B-206ENST00000557358 ABCC9O60706 1549 aa29.23■■■□□ 2.27
VPS33B-206ENST00000557358 RB1CC1Q8TDY2 1594 aa28.13■■■□□ 2.09
VPS33B-206ENST00000557358 DCAF8L2P0C7V8 631 aa28.11■■■□□ 2.09
VPS33B-206ENST00000557358 NACADO15069 1562 aa28.06■■■□□ 2.08
VPS33B-206ENST00000557358 MYO15BQ96JP2 1530 aa27.82■■■□□ 2.04
VPS33B-206ENST00000557358 ZCCHC6Q5VYS8 1495 aaKnown RBP27.78■■■□□ 2.04
VPS33B-206ENST00000557358 DCAF1Q9Y4B6 1507 aa27.65■■■□□ 2.02
VPS33B-206ENST00000557358 UNC13AQ9UPW8 1703 aa27.37■■□□□ 1.97
VPS33B-206ENST00000557358 PABPN1Q86U42 306 aaKnown RBP eCLIP27.3■■□□□ 1.96
VPS33B-206ENST00000557358 SCRIBQ14160 1630 aa27.15■■□□□ 1.94
VPS33B-206ENST00000557358 BICRAQ9NZM4 1560 aa27.12■■□□□ 1.93
VPS33B-206ENST00000557358 SHROOM4Q9ULL8 1493 aa27■■□□□ 1.91
VPS33B-206ENST00000557358 DNAJC5BQ9UF47 199 aa26.81■■□□□ 1.88
VPS33B-206ENST00000557358 EIF4G1Q04637 1599 aaKnown RBP26.5■■□□□ 1.83
VPS33B-206ENST00000557358 CC2D2AQ9P2K1 1620 aa26.43■■□□□ 1.82
VPS33B-206ENST00000557358 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
VPS33B-206ENST00000557358 BAZ1AQ9NRL2 1556 aaPredicted RBP25.96■■□□□ 1.75
VPS33B-206ENST00000557358 SMARCA4P51532 1647 aa25.94■■□□□ 1.74
VPS33B-206ENST00000557358 SMARCA2P51531 1590 aa25.87■■□□□ 1.73
VPS33B-206ENST00000557358 NCAPD3P42695 1498 aa25.85■■□□□ 1.73
VPS33B-206ENST00000557358 ATAD2BQ9ULI0 1458 aa25.83■■□□□ 1.73
VPS33B-206ENST00000557358 HMGXB3Q12766 1538 aa25.73■■□□□ 1.71
VPS33B-206ENST00000557358 MROH2BQ7Z745 1585 aa25.69■■□□□ 1.7
VPS33B-206ENST00000557358 BAZ1BQ9UIG0 1483 aaKnown RBP25.68■■□□□ 1.7
VPS33B-206ENST00000557358 PEG3Q9GZU2 1588 aa25.67■■□□□ 1.7
VPS33B-206ENST00000557358 WIZO95785 1651 aa25.43■■□□□ 1.66
VPS33B-206ENST00000557358 RSF1Q96T23 1441 aaPredicted RBP25.38■■□□□ 1.65
VPS33B-206ENST00000557358 ERCC6Q03468 1493 aa25.32■■□□□ 1.64
VPS33B-206ENST00000557358 LAMC3Q9Y6N6 1575 aa25.22■■□□□ 1.63
VPS33B-206ENST00000557358 NESP48681 1621 aa25.2■■□□□ 1.62
VPS33B-206ENST00000557358 TOP2AP11388 1531 aaKnown RBP25.2■■□□□ 1.62
VPS33B-206ENST00000557358 PDS5BQ9NTI5 1447 aa25.12■■□□□ 1.61
VPS33B-206ENST00000557358 CADPSQ9ULU8 1353 aa25.12■■□□□ 1.61
VPS33B-206ENST00000557358 CUX2O14529 1486 aa25.03■■□□□ 1.6
VPS33B-206ENST00000557358 KIF21AQ7Z4S6 1674 aa24.93■■□□□ 1.58
VPS33B-206ENST00000557358 CFTRP13569 1480 aa24.91■■□□□ 1.58
VPS33B-206ENST00000557358 CCDC88BA6NC98 1476 aa24.88■■□□□ 1.57
VPS33B-206ENST00000557358 THOC2Q8NI27 1593 aaKnown RBP24.85■■□□□ 1.57
VPS33B-206ENST00000557358 CEP164Q9UPV0 1460 aa24.84■■□□□ 1.57
VPS33B-206ENST00000557358 FANCD2Q9BXW9 1451 aa24.83■■□□□ 1.56
VPS33B-206ENST00000557358 MRC2Q9UBG0 1479 aa24.8■■□□□ 1.56
VPS33B-206ENST00000557358 SUPT5HO00267 1087 aaKnown RBP24.78■■□□□ 1.56
VPS33B-206ENST00000557358 PRDM2Q13029 1718 aa24.75■■□□□ 1.55
VPS33B-206ENST00000557358 WDR62O43379 1518 aa24.68■■□□□ 1.54
VPS33B-206ENST00000557358 URB2Q14146 1524 aaKnown RBP24.51■■□□□ 1.51
VPS33B-206ENST00000557358 ABCC8Q09428 1581 aa24.5■■□□□ 1.51
VPS33B-206ENST00000557358 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
VPS33B-206ENST00000557358 DNMBPQ6XZF7 1577 aa24.37■■□□□ 1.49
VPS33B-206ENST00000557358 DNAJC5Q9H3Z4 198 aa24.37■■□□□ 1.49
VPS33B-206ENST00000557358 IFT140Q96RY7 1462 aa24.32■■□□□ 1.48
VPS33B-206ENST00000557358 POLA1P09884 1462 aaPredicted RBP24.17■■□□□ 1.46
VPS33B-206ENST00000557358 CUX1P39880 1505 aa24.13■■□□□ 1.45
VPS33B-206ENST00000557358 SOGA1O94964 1423 aa24.12■■□□□ 1.45
VPS33B-206ENST00000557358 ZNF608Q9ULD9 1512 aaPredicted RBP24.12■■□□□ 1.45
VPS33B-206ENST00000557358 FGD5Q6ZNL6 1462 aa24.11■■□□□ 1.45
VPS33B-206ENST00000557358 TARBP1Q13395 1621 aaKnown RBP24.09■■□□□ 1.45
VPS33B-206ENST00000557358 EIF4G3O43432 1585 aaKnown RBP24.06■■□□□ 1.44
VPS33B-206ENST00000557358 RAD54L2Q9Y4B4 1467 aa24.05■■□□□ 1.44
VPS33B-206ENST00000557358 OSCARQ8IYS5 282 aa24.04■■□□□ 1.44
VPS33B-206ENST00000557358 WRNQ14191 1432 aaPredicted RBP eCLIP24.01■■□□□ 1.43
VPS33B-206ENST00000557358 AQRO60306 1485 aaKnown RBP eCLIP24.01■■□□□ 1.434e-6■■□□□ 13.6
VPS33B-206ENST00000557358 WDR97A6NE52 1622 aa24■■□□□ 1.43
VPS33B-206ENST00000557358 TDRD9Q8NDG6 1382 aaKnown RBP23.97■■□□□ 1.43
VPS33B-206ENST00000557358 TOP2BQ02880 1626 aa23.93■■□□□ 1.42
VPS33B-206ENST00000557358 BIVM-ERCC5R4GMW8 1640 aa23.92■■□□□ 1.42
VPS33B-206ENST00000557358 FBLN2P98095 1184 aa23.89■■□□□ 1.41
VPS33B-206ENST00000557358 ABCA10Q8WWZ4 1543 aa23.88■■□□□ 1.41
VPS33B-206ENST00000557358 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
VPS33B-206ENST00000557358 SYNJ1O43426 1573 aa23.86■■□□□ 1.41
VPS33B-206ENST00000557358 GAPVD1Q14C86 1478 aa23.84■■□□□ 1.41
VPS33B-206ENST00000557358 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
VPS33B-206ENST00000557358 SNAPC4Q5SXM2 1469 aa23.81■■□□□ 1.4
VPS33B-206ENST00000557358 CHMP7Q8WUX9 453 aaPredicted RBP23.8■■□□□ 1.4
VPS33B-206ENST00000557358 CHD1O14646 1710 aa23.79■■□□□ 1.4
VPS33B-206ENST00000557358 PBRM1Q86U86 1689 aa23.76■■□□□ 1.39
VPS33B-206ENST00000557358 ABCA5Q8WWZ7 1642 aa23.75■■□□□ 1.39
VPS33B-206ENST00000557358 SYNJ2O15056 1496 aa23.71■■□□□ 1.39
VPS33B-206ENST00000557358 ERICH3Q5RHP9 1530 aa23.62■■□□□ 1.37
VPS33B-206ENST00000557358 TRIM41Q8WV44 630 aa23.6■■□□□ 1.37
VPS33B-206ENST00000557358 FHAD1B1AJZ9 1412 aa23.58■■□□□ 1.36
VPS33B-206ENST00000557358 KIF27Q86VH2 1401 aa23.57■■□□□ 1.36
VPS33B-206ENST00000557358 ADAMTS12P58397 1594 aa23.56■■□□□ 1.36
VPS33B-206ENST00000557358 RIMBP3CA6NJZ7 1639 aa23.55■■□□□ 1.36
VPS33B-206ENST00000557358 RIMBP3BA6NNM3 1639 aa23.55■■□□□ 1.36
VPS33B-206ENST00000557358 RIMBP3Q9UFD9 1639 aa23.55■■□□□ 1.36
VPS33B-206ENST00000557358 ARHGEF11O15085 1522 aa23.54■■□□□ 1.36
VPS33B-206ENST00000557358 GRIN2AQ12879 1464 aa23.52■■□□□ 1.36
VPS33B-206ENST00000557358 CLASP1Q7Z460 1538 aa23.49■■□□□ 1.35
VPS33B-206ENST00000557358 CYB5RLQ6IPT4 315 aa23.41■■□□□ 1.34
VPS33B-206ENST00000557358 CUL7Q14999 1698 aa23.41■■□□□ 1.34
VPS33B-206ENST00000557358 NUP160Q12769 1436 aa23.4■■□□□ 1.34
VPS33B-206ENST00000557358 IGF1RP08069 1367 aa23.4■■□□□ 1.34
VPS33B-206ENST00000557358 CEP170Q5SW79 1584 aa23.35■■□□□ 1.33
VPS33B-206ENST00000557358 ARAP1Q96P48 1450 aa23.31■■□□□ 1.32
VPS33B-206ENST00000557358 CARMIL1Q5VZK9 1371 aa23.31■■□□□ 1.32
VPS33B-206ENST00000557358 JPH4Q96JJ6 628 aa23.24■■□□□ 1.31
VPS33B-206ENST00000557358 SHROOM2Q13796 1616 aa23.21■■□□□ 1.31
VPS33B-206ENST00000557358 RUSC2Q8N2Y8 1516 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms