RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 NISCHQ9Y2I1 1504 aa27.5■■□□□ 1.99
SYNE2-227ENST00000557307 CCDC180Q9P1Z9 1646 aa24.67■■□□□ 1.54
SYNE2-227ENST00000557307 ABCC9O60706 1549 aa24.5■■□□□ 1.51
SYNE2-227ENST00000557307 RB1CC1Q8TDY2 1594 aa23.33■■□□□ 1.33
SYNE2-227ENST00000557307 NACADO15069 1562 aa23.18■■□□□ 1.3
SYNE2-227ENST00000557307 UNC13AQ9UPW8 1703 aa23.06■■□□□ 1.28
SYNE2-227ENST00000557307 DCAF8L2P0C7V8 631 aa23.01■■□□□ 1.27
SYNE2-227ENST00000557307 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
SYNE2-227ENST00000557307 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
SYNE2-227ENST00000557307 DNAJC5BQ9UF47 199 aa22.84■■□□□ 1.25
SYNE2-227ENST00000557307 BICRAQ9NZM4 1560 aa22.78■■□□□ 1.24
SYNE2-227ENST00000557307 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
SYNE2-227ENST00000557307 DCAF1Q9Y4B6 1507 aa22.67■■□□□ 1.22
SYNE2-227ENST00000557307 SCRIBQ14160 1630 aa22.54■■□□□ 1.2
SYNE2-227ENST00000557307 SHROOM4Q9ULL8 1493 aa22.28■■□□□ 1.16
SYNE2-227ENST00000557307 CC2D2AQ9P2K1 1620 aa22.17■■□□□ 1.14
SYNE2-227ENST00000557307 EIF4G1Q04637 1599 aaKnown RBP22.14■■□□□ 1.13
SYNE2-227ENST00000557307 CECR2Q9BXF3 1484 aa21.99■■□□□ 1.11
SYNE2-227ENST00000557307 SMARCA4P51532 1647 aa21.48■■□□□ 1.03
SYNE2-227ENST00000557307 ATAD2BQ9ULI0 1458 aa21.39■■□□□ 1.01
SYNE2-227ENST00000557307 NCAPD3P42695 1498 aa21.38■■□□□ 1.01
SYNE2-227ENST00000557307 BAZ1AQ9NRL2 1556 aaPredicted RBP21.31■■□□□ 1
SYNE2-227ENST00000557307 SMARCA2P51531 1590 aa21.3■■□□□ 1
SYNE2-227ENST00000557307 HMGXB3Q12766 1538 aa21.29■■□□□ 1
SYNE2-227ENST00000557307 MROH2BQ7Z745 1585 aa21.25■□□□□ 0.99
SYNE2-227ENST00000557307 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
SYNE2-227ENST00000557307 BAZ1BQ9UIG0 1483 aaKnown RBP21.17■□□□□ 0.98
SYNE2-227ENST00000557307 NESP48681 1621 aa21.14■□□□□ 0.97
SYNE2-227ENST00000557307 WIZO95785 1651 aa21.07■□□□□ 0.96
SYNE2-227ENST00000557307 ERCC6Q03468 1493 aa21.04■□□□□ 0.96
SYNE2-227ENST00000557307 KIF21AQ7Z4S6 1674 aa20.96■□□□□ 0.95
SYNE2-227ENST00000557307 CUX2O14529 1486 aa20.95■□□□□ 0.94
SYNE2-227ENST00000557307 THOC2Q8NI27 1593 aaKnown RBP20.93■□□□□ 0.94
SYNE2-227ENST00000557307 LAMC3Q9Y6N6 1575 aa20.93■□□□□ 0.94
SYNE2-227ENST00000557307 RSF1Q96T23 1441 aaPredicted RBP20.78■□□□□ 0.92
SYNE2-227ENST00000557307 DNAJC5Q9H3Z4 198 aa20.72■□□□□ 0.91
SYNE2-227ENST00000557307 TOP2AP11388 1531 aaKnown RBP20.72■□□□□ 0.91
SYNE2-227ENST00000557307 CADPSQ9ULU8 1353 aa20.71■□□□□ 0.91
SYNE2-227ENST00000557307 PDS5BQ9NTI5 1447 aa20.69■□□□□ 0.9
SYNE2-227ENST00000557307 MRC2Q9UBG0 1479 aa20.6■□□□□ 0.89
SYNE2-227ENST00000557307 WDR62O43379 1518 aa20.59■□□□□ 0.89
SYNE2-227ENST00000557307 CFTRP13569 1480 aa20.56■□□□□ 0.88
SYNE2-227ENST00000557307 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
SYNE2-227ENST00000557307 FANCD2Q9BXW9 1451 aa20.54■□□□□ 0.88
SYNE2-227ENST00000557307 CEP164Q9UPV0 1460 aa20.54■□□□□ 0.88
SYNE2-227ENST00000557307 CCDC88BA6NC98 1476 aa20.46■□□□□ 0.87
SYNE2-227ENST00000557307 URB2Q14146 1524 aaKnown RBP20.43■□□□□ 0.86
SYNE2-227ENST00000557307 TOPBP1Q92547 1522 aa20.21■□□□□ 0.83
SYNE2-227ENST00000557307 ZNF608Q9ULD9 1512 aaPredicted RBP20.16■□□□□ 0.82
SYNE2-227ENST00000557307 DNMBPQ6XZF7 1577 aa20.15■□□□□ 0.82
SYNE2-227ENST00000557307 EIF4G3O43432 1585 aaKnown RBP20.1■□□□□ 0.81
SYNE2-227ENST00000557307 IFT140Q96RY7 1462 aa20.1■□□□□ 0.81
SYNE2-227ENST00000557307 TARBP1Q13395 1621 aaKnown RBP20.08■□□□□ 0.8
SYNE2-227ENST00000557307 ABCC8Q09428 1581 aa20.02■□□□□ 0.8
SYNE2-227ENST00000557307 POLA1P09884 1462 aaPredicted RBP20.01■□□□□ 0.79
SYNE2-227ENST00000557307 CHD1O14646 1710 aa19.98■□□□□ 0.79
SYNE2-227ENST00000557307 RAD54L2Q9Y4B4 1467 aa19.96■□□□□ 0.79
SYNE2-227ENST00000557307 CUX1P39880 1505 aa19.95■□□□□ 0.78
SYNE2-227ENST00000557307 AQRO60306 1485 aaKnown RBP eCLIP19.94■□□□□ 0.78
SYNE2-227ENST00000557307 SUPT5HO00267 1087 aaKnown RBP19.92■□□□□ 0.78
SYNE2-227ENST00000557307 TRIM41Q8WV44 630 aa19.92■□□□□ 0.78
SYNE2-227ENST00000557307 FGD5Q6ZNL6 1462 aa19.92■□□□□ 0.78
SYNE2-227ENST00000557307 OSCARQ8IYS5 282 aa19.91■□□□□ 0.78
SYNE2-227ENST00000557307 WDR97A6NE52 1622 aa19.91■□□□□ 0.78
SYNE2-227ENST00000557307 RIMBP3CA6NJZ7 1639 aa19.9■□□□□ 0.78
SYNE2-227ENST00000557307 RIMBP3BA6NNM3 1639 aa19.9■□□□□ 0.78
SYNE2-227ENST00000557307 RIMBP3Q9UFD9 1639 aa19.9■□□□□ 0.78
SYNE2-227ENST00000557307 SOGA1O94964 1423 aa19.83■□□□□ 0.76
SYNE2-227ENST00000557307 TDRD9Q8NDG6 1382 aaKnown RBP19.81■□□□□ 0.76
SYNE2-227ENST00000557307 PBRM1Q86U86 1689 aa19.79■□□□□ 0.76
SYNE2-227ENST00000557307 ARHGEF11O15085 1522 aa19.78■□□□□ 0.76
SYNE2-227ENST00000557307 SNAPC4Q5SXM2 1469 aa19.77■□□□□ 0.76
SYNE2-227ENST00000557307 ABCA5Q8WWZ7 1642 aa19.72■□□□□ 0.75
SYNE2-227ENST00000557307 SYNJ1O43426 1573 aa19.71■□□□□ 0.75
SYNE2-227ENST00000557307 BIVM-ERCC5R4GMW8 1640 aa19.71■□□□□ 0.75
SYNE2-227ENST00000557307 FBLN2P98095 1184 aa19.67■□□□□ 0.74
SYNE2-227ENST00000557307 CLASP1Q7Z460 1538 aa19.66■□□□□ 0.74
SYNE2-227ENST00000557307 GRIN2BQ13224 1484 aa19.66■□□□□ 0.74
SYNE2-227ENST00000557307 ABCA10Q8WWZ4 1543 aa19.66■□□□□ 0.74
SYNE2-227ENST00000557307 TOP2BQ02880 1626 aa19.65■□□□□ 0.74
SYNE2-227ENST00000557307 MAGI1Q96QZ7 1491 aaPredicted RBP19.65■□□□□ 0.74
SYNE2-227ENST00000557307 GAPVD1Q14C86 1478 aa19.62■□□□□ 0.73
SYNE2-227ENST00000557307 ARAP1Q96P48 1450 aa19.62■□□□□ 0.73
SYNE2-227ENST00000557307 SYNJ2O15056 1496 aa19.59■□□□□ 0.73
SYNE2-227ENST00000557307 WRNQ14191 1432 aaPredicted RBP eCLIP19.58■□□□□ 0.72
SYNE2-227ENST00000557307 ADAMTS12P58397 1594 aa19.55■□□□□ 0.72
SYNE2-227ENST00000557307 CHMP7Q8WUX9 453 aaPredicted RBP19.51■□□□□ 0.71
SYNE2-227ENST00000557307 CYB5RLQ6IPT4 315 aa19.5■□□□□ 0.71
SYNE2-227ENST00000557307 CEP170Q5SW79 1584 aa19.48■□□□□ 0.71
SYNE2-227ENST00000557307 GRIN2AQ12879 1464 aa19.46■□□□□ 0.71
SYNE2-227ENST00000557307 ERCC6L2Q5T890 1561 aa19.45■□□□□ 0.7
SYNE2-227ENST00000557307 ERICH3Q5RHP9 1530 aa19.4■□□□□ 0.7
SYNE2-227ENST00000557307 NUP160Q12769 1436 aa19.37■□□□□ 0.69
SYNE2-227ENST00000557307 SHROOM2Q13796 1616 aa19.36■□□□□ 0.69
SYNE2-227ENST00000557307 FHAD1B1AJZ9 1412 aa19.34■□□□□ 0.69
SYNE2-227ENST00000557307 RUSC2Q8N2Y8 1516 aa19.29■□□□□ 0.68
SYNE2-227ENST00000557307 TRHP20396 242 aaPredicted RBP19.2■□□□□ 0.66
SYNE2-227ENST00000557307 CUL7Q14999 1698 aa19.2■□□□□ 0.66
SYNE2-227ENST00000557307 IGF1RP08069 1367 aa19.14■□□□□ 0.65
SYNE2-227ENST00000557307 KIF27Q86VH2 1401 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms