RNA–Protein interactions for RNA: ENST00000557293.5

PSEN1-221, Transcript of presenilin 1, humanhuman

TSL 2

Gene PSEN1, Length 576 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-221ENST00000557293 NISCHQ9Y2I1 1504 aa32.27■■■□□ 2.76
PSEN1-221ENST00000557293 ABCC9O60706 1549 aa29.61■■■□□ 2.33
PSEN1-221ENST00000557293 CCDC180Q9P1Z9 1646 aa29.05■■■□□ 2.24
PSEN1-221ENST00000557293 DNAJC5BQ9UF47 199 aa28.39■■■□□ 2.14
PSEN1-221ENST00000557293 RB1CC1Q8TDY2 1594 aa27.9■■■□□ 2.06
PSEN1-221ENST00000557293 NACADO15069 1562 aa27.63■■■□□ 2.01
PSEN1-221ENST00000557293 PABPN1Q86U42 306 aaKnown RBP eCLIP27.57■■■□□ 2
PSEN1-221ENST00000557293 DCAF8L2P0C7V8 631 aa27.45■■□□□ 1.98
PSEN1-221ENST00000557293 UNC13AQ9UPW8 1703 aa27.29■■□□□ 1.96
PSEN1-221ENST00000557293 BICRAQ9NZM4 1560 aa27.22■■□□□ 1.95
PSEN1-221ENST00000557293 MYO15BQ96JP2 1530 aa27.13■■□□□ 1.93
PSEN1-221ENST00000557293 CECR2Q9BXF3 1484 aa26.71■■□□□ 1.87
PSEN1-221ENST00000557293 CC2D2AQ9P2K1 1620 aa26.7■■□□□ 1.86
PSEN1-221ENST00000557293 SHROOM4Q9ULL8 1493 aa26.68■■□□□ 1.86
PSEN1-221ENST00000557293 ZCCHC6Q5VYS8 1495 aaKnown RBP26.62■■□□□ 1.85
PSEN1-221ENST00000557293 DCAF1Q9Y4B6 1507 aa26.61■■□□□ 1.85
PSEN1-221ENST00000557293 EIF4G1Q04637 1599 aaKnown RBP26.52■■□□□ 1.84
PSEN1-221ENST00000557293 SCRIBQ14160 1630 aa26.47■■□□□ 1.83
PSEN1-221ENST00000557293 DNAJC5Q9H3Z4 198 aa26.33■■□□□ 1.81
PSEN1-221ENST00000557293 CUX2O14529 1486 aa25.67■■□□□ 1.7
PSEN1-221ENST00000557293 NCAPD3P42695 1498 aa25.6■■□□□ 1.69
PSEN1-221ENST00000557293 ERCC6Q03468 1493 aa25.51■■□□□ 1.67
PSEN1-221ENST00000557293 ATAD2BQ9ULI0 1458 aa25.44■■□□□ 1.66
PSEN1-221ENST00000557293 NESP48681 1621 aa25.34■■□□□ 1.65
PSEN1-221ENST00000557293 HMGXB3Q12766 1538 aa25.27■■□□□ 1.64
PSEN1-221ENST00000557293 SMARCA2P51531 1590 aa25.25■■□□□ 1.63
PSEN1-221ENST00000557293 SMARCA4P51532 1647 aa25.23■■□□□ 1.63
PSEN1-221ENST00000557293 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
PSEN1-221ENST00000557293 BAZ1BQ9UIG0 1483 aaKnown RBP25.09■■□□□ 1.61
PSEN1-221ENST00000557293 PEG3Q9GZU2 1588 aa25.01■■□□□ 1.59
PSEN1-221ENST00000557293 BAZ1AQ9NRL2 1556 aaPredicted RBP25.01■■□□□ 1.59
PSEN1-221ENST00000557293 LAMC3Q9Y6N6 1575 aa25■■□□□ 1.59
PSEN1-221ENST00000557293 KIF21AQ7Z4S6 1674 aa24.9■■□□□ 1.58
PSEN1-221ENST00000557293 MROH2BQ7Z745 1585 aa24.89■■□□□ 1.58
PSEN1-221ENST00000557293 PDS5BQ9NTI5 1447 aa24.89■■□□□ 1.58
PSEN1-221ENST00000557293 TRIM41Q8WV44 630 aa24.89■■□□□ 1.58
PSEN1-221ENST00000557293 CADPSQ9ULU8 1353 aa24.79■■□□□ 1.56
PSEN1-221ENST00000557293 MRC2Q9UBG0 1479 aa24.7■■□□□ 1.55
PSEN1-221ENST00000557293 WDR62O43379 1518 aa24.66■■□□□ 1.54
PSEN1-221ENST00000557293 WIZO95785 1651 aa24.53■■□□□ 1.52
PSEN1-221ENST00000557293 OSCARQ8IYS5 282 aa24.49■■□□□ 1.51
PSEN1-221ENST00000557293 CEP164Q9UPV0 1460 aa24.48■■□□□ 1.51
PSEN1-221ENST00000557293 FANCD2Q9BXW9 1451 aa24.46■■□□□ 1.51
PSEN1-221ENST00000557293 CFTRP13569 1480 aa24.39■■□□□ 1.5
PSEN1-221ENST00000557293 URB2Q14146 1524 aaKnown RBP24.33■■□□□ 1.49
PSEN1-221ENST00000557293 RSF1Q96T23 1441 aaPredicted RBP24.23■■□□□ 1.47
PSEN1-221ENST00000557293 RIMBP3CA6NJZ7 1639 aa24.16■■□□□ 1.46
PSEN1-221ENST00000557293 RIMBP3BA6NNM3 1639 aa24.16■■□□□ 1.46
PSEN1-221ENST00000557293 RIMBP3Q9UFD9 1639 aa24.16■■□□□ 1.46
PSEN1-221ENST00000557293 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
PSEN1-221ENST00000557293 ZNF608Q9ULD9 1512 aaPredicted RBP24.11■■□□□ 1.45
PSEN1-221ENST00000557293 ARHGEF11O15085 1522 aa24.05■■□□□ 1.44
PSEN1-221ENST00000557293 IFT140Q96RY7 1462 aa24.04■■□□□ 1.44
PSEN1-221ENST00000557293 TOPBP1Q92547 1522 aa23.96■■□□□ 1.43
PSEN1-221ENST00000557293 CCDC88BA6NC98 1476 aa23.96■■□□□ 1.43
PSEN1-221ENST00000557293 CYB5RLQ6IPT4 315 aa23.96■■□□□ 1.43
PSEN1-221ENST00000557293 PRDM2Q13029 1718 aa23.95■■□□□ 1.42
PSEN1-221ENST00000557293 AQRO60306 1485 aaKnown RBP eCLIP23.85■■□□□ 1.41
PSEN1-221ENST00000557293 EIF4G3O43432 1585 aaKnown RBP23.85■■□□□ 1.41
PSEN1-221ENST00000557293 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
PSEN1-221ENST00000557293 ARAP1Q96P48 1450 aa23.81■■□□□ 1.4
PSEN1-221ENST00000557293 TARBP1Q13395 1621 aaKnown RBP23.78■■□□□ 1.4
PSEN1-221ENST00000557293 TRHP20396 242 aaPredicted RBP23.78■■□□□ 1.4
PSEN1-221ENST00000557293 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
PSEN1-221ENST00000557293 CHD1O14646 1710 aa23.76■■□□□ 1.39
PSEN1-221ENST00000557293 FBLN2P98095 1184 aa23.73■■□□□ 1.39
PSEN1-221ENST00000557293 POLA1P09884 1462 aaPredicted RBP23.68■■□□□ 1.38
PSEN1-221ENST00000557293 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
PSEN1-221ENST00000557293 TDRD9Q8NDG6 1382 aaKnown RBP23.63■■□□□ 1.37
PSEN1-221ENST00000557293 SOGA1O94964 1423 aa23.59■■□□□ 1.37
PSEN1-221ENST00000557293 CLASP1Q7Z460 1538 aa23.54■■□□□ 1.36
PSEN1-221ENST00000557293 SNAPC4Q5SXM2 1469 aa23.51■■□□□ 1.35
PSEN1-221ENST00000557293 CHMP7Q8WUX9 453 aaPredicted RBP23.49■■□□□ 1.35
PSEN1-221ENST00000557293 FGD5Q6ZNL6 1462 aa23.46■■□□□ 1.35
PSEN1-221ENST00000557293 MAGI1Q96QZ7 1491 aaPredicted RBP23.42■■□□□ 1.34
PSEN1-221ENST00000557293 WDR97A6NE52 1622 aa23.41■■□□□ 1.34
PSEN1-221ENST00000557293 SYNJ1O43426 1573 aa23.4■■□□□ 1.34
PSEN1-221ENST00000557293 GRIN2BQ13224 1484 aa23.39■■□□□ 1.34
PSEN1-221ENST00000557293 AEBP2Q6ZN18 517 aaPredicted RBP23.39■■□□□ 1.33
PSEN1-221ENST00000557293 CUX1P39880 1505 aa23.38■■□□□ 1.33
PSEN1-221ENST00000557293 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
PSEN1-221ENST00000557293 GAPVD1Q14C86 1478 aa23.32■■□□□ 1.32
PSEN1-221ENST00000557293 PBRM1Q86U86 1689 aa23.19■■□□□ 1.3
PSEN1-221ENST00000557293 ERCC6L2Q5T890 1561 aa23.18■■□□□ 1.3
PSEN1-221ENST00000557293 ABCA10Q8WWZ4 1543 aa23.18■■□□□ 1.3
PSEN1-221ENST00000557293 ABCA5Q8WWZ7 1642 aa23.14■■□□□ 1.29
PSEN1-221ENST00000557293 GRIN2AQ12879 1464 aa23.1■■□□□ 1.29
PSEN1-221ENST00000557293 NUP160Q12769 1436 aa23.08■■□□□ 1.28
PSEN1-221ENST00000557293 CEP170Q5SW79 1584 aa23.06■■□□□ 1.28
PSEN1-221ENST00000557293 SHROOM2Q13796 1616 aa22.99■■□□□ 1.27
PSEN1-221ENST00000557293 ADAMTS12P58397 1594 aa22.98■■□□□ 1.27
PSEN1-221ENST00000557293 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.27
PSEN1-221ENST00000557293 FHAD1B1AJZ9 1412 aa22.95■■□□□ 1.26
PSEN1-221ENST00000557293 KIF13AQ9H1H9 1805 aa22.92■■□□□ 1.26
PSEN1-221ENST00000557293 PRG4Q92954 1404 aaPredicted RBP22.89■■□□□ 1.25
PSEN1-221ENST00000557293 JPH4Q96JJ6 628 aa22.88■■□□□ 1.25
PSEN1-221ENST00000557293 ERICH3Q5RHP9 1530 aa22.84■■□□□ 1.25
PSEN1-221ENST00000557293 TOP2BQ02880 1626 aa22.84■■□□□ 1.25
PSEN1-221ENST00000557293 BIVM-ERCC5R4GMW8 1640 aa22.83■■□□□ 1.25
PSEN1-221ENST00000557293 FAM69CQ0P6D2 419 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms