RNA–Protein interactions for RNA: ENST00000557123.5

CALM1-215, Transcript of calmodulin 1, human

TSL 3

Gene CALM1, Length 569 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALM1-215	ENST00000557123	NISCH	Q9Y2I1	1504 aa		43.97	■■■■■ 4.63
CALM1-215	ENST00000557123	ABCC9	O60706	1549 aa		40.47	■■■■■ 4.07
CALM1-215	ENST00000557123	CCDC180	Q9P1Z9	1646 aa		39.81	■■■■□ 3.96
CALM1-215	ENST00000557123	DNAJC5B	Q9UF47	199 aa		38.55	■■■■□ 3.76
CALM1-215	ENST00000557123	RB1CC1	Q8TDY2	1594 aa		38.24	■■■■□ 3.71
CALM1-215	ENST00000557123	NACAD	O15069	1562 aa		37.8	■■■■□ 3.64
CALM1-215	ENST00000557123	PABPN1	Q86U42	306 aa	Known RBP eCLIP	37.53	■■■■□ 3.6
CALM1-215	ENST00000557123	DCAF8L2	P0C7V8	631 aa		37.4	■■■■□ 3.58
CALM1-215	ENST00000557123	UNC13A	Q9UPW8	1703 aa		37.34	■■■■□ 3.57
CALM1-215	ENST00000557123	BICRA	Q9NZM4	1560 aa		37.11	■■■■□ 3.53
CALM1-215	ENST00000557123	MYO15B	Q96JP2	1530 aa		37.05	■■■■□ 3.52
CALM1-215	ENST00000557123	SHROOM4	Q9ULL8	1493 aa		36.62	■■■■□ 3.45
CALM1-215	ENST00000557123	CECR2	Q9BXF3	1484 aa		36.56	■■■■□ 3.44
CALM1-215	ENST00000557123	CC2D2A	Q9P2K1	1620 aa		36.53	■■■■□ 3.44
CALM1-215	ENST00000557123	DCAF1	Q9Y4B6	1507 aa		36.29	■■■■□ 3.4
CALM1-215	ENST00000557123	ZCCHC6	Q5VYS8	1495 aa	Known RBP	36.29	■■■■□ 3.4
CALM1-215	ENST00000557123	EIF4G1	Q04637	1599 aa	Known RBP	36.27	■■■■□ 3.4
CALM1-215	ENST00000557123	SCRIB	Q14160	1630 aa		36.19	■■■■□ 3.38
CALM1-215	ENST00000557123	DNAJC5	Q9H3Z4	198 aa		35.99	■■■■□ 3.35
CALM1-215	ENST00000557123	CUX2	O14529	1486 aa		35.22	■■■■□ 3.23
CALM1-215	ENST00000557123	ERCC6	Q03468	1493 aa		35.04	■■■■□ 3.2
CALM1-215	ENST00000557123	NCAPD3	P42695	1498 aa		34.89	■■■■□ 3.18
CALM1-215	ENST00000557123	ATAD2B	Q9ULI0	1458 aa		34.67	■■■■□ 3.14
CALM1-215	ENST00000557123	HMGXB3	Q12766	1538 aa		34.58	■■■■□ 3.13
CALM1-215	ENST00000557123	SMARCA2	P51531	1590 aa		34.57	■■■■□ 3.13
CALM1-215	ENST00000557123	NES	P48681	1621 aa		34.54	■■■■□ 3.12
CALM1-215	ENST00000557123	SMARCA4	P51532	1647 aa		34.46	■■■■□ 3.11
CALM1-215	ENST00000557123	THOC2	Q8NI27	1593 aa	Known RBP	34.36	■■■■□ 3.09
CALM1-215	ENST00000557123	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.32	■■■■□ 3.08
CALM1-215	ENST00000557123	LAMC3	Q9Y6N6	1575 aa		34.23	■■■■□ 3.07
CALM1-215	ENST00000557123	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	34.19	■■■■□ 3.06
CALM1-215	ENST00000557123	PEG3	Q9GZU2	1588 aa		34.14	■■■■□ 3.06
CALM1-215	ENST00000557123	TRIM41	Q8WV44	630 aa		34.11	■■■■□ 3.05
CALM1-215	ENST00000557123	KIF21A	Q7Z4S6	1674 aa		34.09	■■■■□ 3.05
CALM1-215	ENST00000557123	PDS5B	Q9NTI5	1447 aa		34.07	■■■■□ 3.04
CALM1-215	ENST00000557123	MROH2B	Q7Z745	1585 aa		33.85	■■■■□ 3.01
CALM1-215	ENST00000557123	MRC2	Q9UBG0	1479 aa		33.81	■■■■□ 3
CALM1-215	ENST00000557123	CADPS	Q9ULU8	1353 aa		33.79	■■■■□ 3
CALM1-215	ENST00000557123	WDR62	O43379	1518 aa		33.74	■■■□□ 2.99
CALM1-215	ENST00000557123	CEP164	Q9UPV0	1460 aa		33.54	■■■□□ 2.96
CALM1-215	ENST00000557123	OSCAR	Q8IYS5	282 aa		33.47	■■■□□ 2.95
CALM1-215	ENST00000557123	FANCD2	Q9BXW9	1451 aa		33.41	■■■□□ 2.94
CALM1-215	ENST00000557123	WIZ	O95785	1651 aa		33.4	■■■□□ 2.94
CALM1-215	ENST00000557123	CFTR	P13569	1480 aa		33.25	■■■□□ 2.91
CALM1-215	ENST00000557123	URB2	Q14146	1524 aa	Known RBP	33.17	■■■□□ 2.9
CALM1-215	ENST00000557123	RIMBP3C	A6NJZ7	1639 aa		33.11	■■■□□ 2.89
CALM1-215	ENST00000557123	RIMBP3B	A6NNM3	1639 aa		33.11	■■■□□ 2.89
CALM1-215	ENST00000557123	RIMBP3	Q9UFD9	1639 aa		33.11	■■■□□ 2.89
CALM1-215	ENST00000557123	TOP2A	P11388	1531 aa	Known RBP	32.97	■■■□□ 2.87
CALM1-215	ENST00000557123	ARHGEF11	O15085	1522 aa		32.93	■■■□□ 2.86
CALM1-215	ENST00000557123	PRDM2	Q13029	1718 aa		32.9	■■■□□ 2.86
CALM1-215	ENST00000557123	IFT140	Q96RY7	1462 aa		32.89	■■■□□ 2.86
CALM1-215	ENST00000557123	RSF1	Q96T23	1441 aa	Predicted RBP	32.88	■■■□□ 2.85
CALM1-215	ENST00000557123	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.87	■■■□□ 2.85
CALM1-215	ENST00000557123	CYB5RL	Q6IPT4	315 aa		32.73	■■■□□ 2.83
CALM1-215	ENST00000557123	TOPBP1	Q92547	1522 aa		32.7	■■■□□ 2.83
CALM1-215	ENST00000557123	EIF4G3	O43432	1585 aa	Known RBP	32.68	■■■□□ 2.82
CALM1-215	ENST00000557123	ABCC8	Q09428	1581 aa		32.62	■■■□□ 2.81
CALM1-215	ENST00000557123	TRH	P20396	242 aa	Predicted RBP	32.61	■■■□□ 2.81
CALM1-215	ENST00000557123	CHD1	O14646	1710 aa		32.58	■■■□□ 2.81
CALM1-215	ENST00000557123	CCDC88B	A6NC98	1476 aa		32.57	■■■□□ 2.8
CALM1-215	ENST00000557123	ARAP1	Q96P48	1450 aa		32.55	■■■□□ 2.8
CALM1-215	ENST00000557123	DNMBP	Q6XZF7	1577 aa		32.53	■■■□□ 2.8
CALM1-215	ENST00000557123	AQR	O60306	1485 aa	Known RBP eCLIP	32.48	■■■□□ 2.79	2e-6	■■■■□ 26.3
CALM1-215	ENST00000557123	TARBP1	Q13395	1621 aa	Known RBP	32.45	■■■□□ 2.79
CALM1-215	ENST00000557123	FBLN2	P98095	1184 aa		32.44	■■■□□ 2.78
CALM1-215	ENST00000557123	POLA1	P09884	1462 aa	Predicted RBP	32.32	■■■□□ 2.76
CALM1-215	ENST00000557123	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.23	■■■□□ 2.75
CALM1-215	ENST00000557123	RAD54L2	Q9Y4B4	1467 aa		32.18	■■■□□ 2.74
CALM1-215	ENST00000557123	CLASP1	Q7Z460	1538 aa		32.18	■■■□□ 2.74
CALM1-215	ENST00000557123	TDRD9	Q8NDG6	1382 aa	Known RBP	32.17	■■■□□ 2.74
CALM1-215	ENST00000557123	SOGA1	O94964	1423 aa		32.16	■■■□□ 2.74
CALM1-215	ENST00000557123	SNAPC4	Q5SXM2	1469 aa		32.15	■■■□□ 2.74
CALM1-215	ENST00000557123	WDR97	A6NE52	1622 aa		32.13	■■■□□ 2.73
CALM1-215	ENST00000557123	SYNJ1	O43426	1573 aa		32.13	■■■□□ 2.73
CALM1-215	ENST00000557123	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.09	■■■□□ 2.73
CALM1-215	ENST00000557123	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.07	■■■□□ 2.72
CALM1-215	ENST00000557123	FGD5	Q6ZNL6	1462 aa		32.01	■■■□□ 2.71
CALM1-215	ENST00000557123	GRIN2B	Q13224	1484 aa		31.98	■■■□□ 2.71
CALM1-215	ENST00000557123	SYNJ2	O15056	1496 aa		31.96	■■■□□ 2.71
CALM1-215	ENST00000557123	GAPVD1	Q14C86	1478 aa		31.9	■■■□□ 2.7
CALM1-215	ENST00000557123	CUX1	P39880	1505 aa		31.85	■■■□□ 2.69
CALM1-215	ENST00000557123	PBRM1	Q86U86	1689 aa		31.8	■■■□□ 2.68
CALM1-215	ENST00000557123	ABCA5	Q8WWZ7	1642 aa		31.63	■■■□□ 2.65
CALM1-215	ENST00000557123	ABCA10	Q8WWZ4	1543 aa		31.62	■■■□□ 2.65
CALM1-215	ENST00000557123	ERCC6L2	Q5T890	1561 aa		31.59	■■■□□ 2.65
CALM1-215	ENST00000557123	GRIN2A	Q12879	1464 aa		31.56	■■■□□ 2.64
CALM1-215	ENST00000557123	CEP170	Q5SW79	1584 aa		31.51	■■■□□ 2.64
CALM1-215	ENST00000557123	NUP160	Q12769	1436 aa		31.48	■■■□□ 2.63
CALM1-215	ENST00000557123	ADAMTS12	P58397	1594 aa		31.45	■■■□□ 2.63
CALM1-215	ENST00000557123	SHROOM2	Q13796	1616 aa		31.42	■■■□□ 2.62
CALM1-215	ENST00000557123	KIF13A	Q9H1H9	1805 aa		31.41	■■■□□ 2.62
CALM1-215	ENST00000557123	WRN	Q14191	1432 aa	Predicted RBP eCLIP	31.36	■■■□□ 2.61
CALM1-215	ENST00000557123	FHAD1	B1AJZ9	1412 aa		31.33	■■■□□ 2.61
CALM1-215	ENST00000557123	PRG4	Q92954	1404 aa	Predicted RBP	31.23	■■■□□ 2.59
CALM1-215	ENST00000557123	ERICH3	Q5RHP9	1530 aa		31.21	■■■□□ 2.59
CALM1-215	ENST00000557123	BIVM-ERCC5	R4GMW8	1640 aa		31.17	■■■□□ 2.58
CALM1-215	ENST00000557123	TOP2B	Q02880	1626 aa		31.16	■■■□□ 2.58
CALM1-215	ENST00000557123	ABCC10	Q5T3U5	1492 aa		31.16	■■■□□ 2.58
CALM1-215	ENST00000557123	FAM69C	Q0P6D2	419 aa		31.16	■■■□□ 2.58

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms