RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 NISCHQ9Y2I1 1504 aa55.8■■■■■ 6.52
TDP1-216ENST00000556867 CCDC180Q9P1Z9 1646 aa49.7■■■■■ 5.55
TDP1-216ENST00000556867 ABCC9O60706 1549 aa48.58■■■■■ 5.37
TDP1-216ENST00000556867 RB1CC1Q8TDY2 1594 aa46.77■■■■■ 5.08
TDP1-216ENST00000556867 NACADO15069 1562 aa46.7■■■■■ 5.07
TDP1-216ENST00000556867 ZCCHC6Q5VYS8 1495 aaKnown RBP46.5■■■■■ 5.03
TDP1-216ENST00000556867 DCAF8L2P0C7V8 631 aa46.48■■■■■ 5.03
TDP1-216ENST00000556867 MYO15BQ96JP2 1530 aa46.44■■■■■ 5.03
TDP1-216ENST00000556867 DCAF1Q9Y4B6 1507 aa46.22■■■■■ 4.99
TDP1-216ENST00000556867 UNC13AQ9UPW8 1703 aa45.74■■■■■ 4.91
TDP1-216ENST00000556867 BICRAQ9NZM4 1560 aa45.36■■■■■ 4.85
TDP1-216ENST00000556867 PABPN1Q86U42 306 aaKnown RBP eCLIP45.33■■■■■ 4.85
TDP1-216ENST00000556867 SCRIBQ14160 1630 aa45.27■■■■■ 4.84
TDP1-216ENST00000556867 SHROOM4Q9ULL8 1493 aa44.93■■■■■ 4.78
TDP1-216ENST00000556867 DNAJC5BQ9UF47 199 aa44.61■■■■■ 4.73
TDP1-216ENST00000556867 EIF4G1Q04637 1599 aaKnown RBP44.16■■■■■ 4.66
TDP1-216ENST00000556867 CC2D2AQ9P2K1 1620 aa43.99■■■■■ 4.63
TDP1-216ENST00000556867 CECR2Q9BXF3 1484 aa43.68■■■■■ 4.58
TDP1-216ENST00000556867 SMARCA4P51532 1647 aa43.33■■■■■ 4.53
TDP1-216ENST00000556867 BAZ1AQ9NRL2 1556 aaPredicted RBP43.27■■■■■ 4.52
TDP1-216ENST00000556867 NCAPD3P42695 1498 aa43.08■■■■■ 4.49
TDP1-216ENST00000556867 ATAD2BQ9ULI0 1458 aa43.08■■■■■ 4.49
TDP1-216ENST00000556867 SMARCA2P51531 1590 aa43.05■■■■■ 4.48
TDP1-216ENST00000556867 MROH2BQ7Z745 1585 aa42.99■■■■■ 4.47
TDP1-216ENST00000556867 PEG3Q9GZU2 1588 aa42.94■■■■■ 4.46
TDP1-216ENST00000556867 HMGXB3Q12766 1538 aa42.9■■■■■ 4.46
TDP1-216ENST00000556867 BAZ1BQ9UIG0 1483 aaKnown RBP42.72■■■■■ 4.43
TDP1-216ENST00000556867 WIZO95785 1651 aa42.52■■■■■ 4.4
TDP1-216ENST00000556867 RSF1Q96T23 1441 aaPredicted RBP42.47■■■■■ 4.39
TDP1-216ENST00000556867 TOP2AP11388 1531 aaKnown RBP42.1■■■■■ 4.33
TDP1-216ENST00000556867 NESP48681 1621 aa42.03■■■■■ 4.32
TDP1-216ENST00000556867 LAMC3Q9Y6N6 1575 aa41.97■■■■■ 4.31
TDP1-216ENST00000556867 ERCC6Q03468 1493 aa41.88■■■■■ 4.29
TDP1-216ENST00000556867 CADPSQ9ULU8 1353 aa41.79■■■■■ 4.28
TDP1-216ENST00000556867 PDS5BQ9NTI5 1447 aa41.65■■■■■ 4.26
TDP1-216ENST00000556867 KIF21AQ7Z4S6 1674 aa41.58■■■■■ 4.25
TDP1-216ENST00000556867 CCDC88BA6NC98 1476 aa41.56■■■■■ 4.24
TDP1-216ENST00000556867 CFTRP13569 1480 aa41.56■■■■■ 4.24
TDP1-216ENST00000556867 CUX2O14529 1486 aa41.52■■■■■ 4.24
TDP1-216ENST00000556867 THOC2Q8NI27 1593 aaKnown RBP41.47■■■■■ 4.23
TDP1-216ENST00000556867 FANCD2Q9BXW9 1451 aa41.33■■■■■ 4.21
TDP1-216ENST00000556867 PRDM2Q13029 1718 aa41.31■■■■■ 4.2
TDP1-216ENST00000556867 CEP164Q9UPV0 1460 aa41.29■■■■■ 4.2
TDP1-216ENST00000556867 MRC2Q9UBG0 1479 aa41.25■■■■■ 4.19
TDP1-216ENST00000556867 SUPT5HO00267 1087 aaKnown RBP41.24■■■■■ 4.19
TDP1-216ENST00000556867 WDR62O43379 1518 aa41.14■■■■■ 4.18
TDP1-216ENST00000556867 URB2Q14146 1524 aaKnown RBP40.93■■■■■ 4.14
TDP1-216ENST00000556867 TOPBP1Q92547 1522 aa40.67■■■■■ 4.1
TDP1-216ENST00000556867 ABCC8Q09428 1581 aa40.67■■■■■ 4.1
TDP1-216ENST00000556867 DNMBPQ6XZF7 1577 aa40.64■■■■■ 4.1
TDP1-216ENST00000556867 IFT140Q96RY7 1462 aa40.44■■■■■ 4.06
TDP1-216ENST00000556867 CUX1P39880 1505 aa40.35■■■■■ 4.05
TDP1-216ENST00000556867 POLA1P09884 1462 aaPredicted RBP40.32■■■■■ 4.05
TDP1-216ENST00000556867 TARBP1Q13395 1621 aaKnown RBP40.26■■■■■ 4.04
TDP1-216ENST00000556867 DNAJC5Q9H3Z4 198 aa40.25■■■■■ 4.03
TDP1-216ENST00000556867 ZNF608Q9ULD9 1512 aaPredicted RBP40.23■■■■■ 4.03
TDP1-216ENST00000556867 FGD5Q6ZNL6 1462 aa40.21■■■■■ 4.03
TDP1-216ENST00000556867 SOGA1O94964 1423 aa40.12■■■■■ 4.01
TDP1-216ENST00000556867 EIF4G3O43432 1585 aaKnown RBP40.11■■■■■ 4.01
TDP1-216ENST00000556867 RAD54L2Q9Y4B4 1467 aa40.11■■■■■ 4.01
TDP1-216ENST00000556867 WRNQ14191 1432 aaPredicted RBP eCLIP40.05■■■■■ 4
TDP1-216ENST00000556867 BIVM-ERCC5R4GMW8 1640 aa40.02■■■■■ 4
TDP1-216ENST00000556867 TOP2BQ02880 1626 aa40.01■■■■■ 4
TDP1-216ENST00000556867 AQRO60306 1485 aaKnown RBP eCLIP39.98■■■■□ 3.99
TDP1-216ENST00000556867 WDR97A6NE52 1622 aa39.98■■■■□ 3.99
TDP1-216ENST00000556867 SYNJ1O43426 1573 aa39.97■■■■□ 3.99
TDP1-216ENST00000556867 TDRD9Q8NDG6 1382 aaKnown RBP39.88■■■■□ 3.97
TDP1-216ENST00000556867 ABCA10Q8WWZ4 1543 aa39.84■■■■□ 3.97
TDP1-216ENST00000556867 ABCA5Q8WWZ7 1642 aa39.71■■■■□ 3.95
TDP1-216ENST00000556867 OSCARQ8IYS5 282 aa39.7■■■■□ 3.95
TDP1-216ENST00000556867 GRIN2BQ13224 1484 aa39.69■■■■□ 3.94
TDP1-216ENST00000556867 GAPVD1Q14C86 1478 aa39.68■■■■□ 3.94
TDP1-216ENST00000556867 PBRM1Q86U86 1689 aa39.64■■■■□ 3.94
TDP1-216ENST00000556867 SNAPC4Q5SXM2 1469 aa39.64■■■■□ 3.94
TDP1-216ENST00000556867 CHD1O14646 1710 aa39.62■■■■□ 3.93
TDP1-216ENST00000556867 MAGI1Q96QZ7 1491 aaPredicted RBP39.62■■■■□ 3.93
TDP1-216ENST00000556867 SYNJ2O15056 1496 aa39.45■■■■□ 3.91
TDP1-216ENST00000556867 FBLN2P98095 1184 aa39.45■■■■□ 3.91
TDP1-216ENST00000556867 ERICH3Q5RHP9 1530 aa39.36■■■■□ 3.89
TDP1-216ENST00000556867 CHMP7Q8WUX9 453 aaPredicted RBP39.36■■■■□ 3.89
TDP1-216ENST00000556867 ADAMTS12P58397 1594 aa39.33■■■■□ 3.89
TDP1-216ENST00000556867 FHAD1B1AJZ9 1412 aa39.23■■■■□ 3.87
TDP1-216ENST00000556867 KIF27Q86VH2 1401 aa39.21■■■■□ 3.87
TDP1-216ENST00000556867 CLASP1Q7Z460 1538 aa39.2■■■■□ 3.87
TDP1-216ENST00000556867 GRIN2AQ12879 1464 aa39.18■■■■□ 3.86
TDP1-216ENST00000556867 RIMBP3CA6NJZ7 1639 aa39.14■■■■□ 3.86
TDP1-216ENST00000556867 RIMBP3BA6NNM3 1639 aa39.14■■■■□ 3.86
TDP1-216ENST00000556867 RIMBP3Q9UFD9 1639 aa39.14■■■■□ 3.86
TDP1-216ENST00000556867 ARHGEF11O15085 1522 aa39.13■■■■□ 3.85
TDP1-216ENST00000556867 IGF1RP08069 1367 aa39.04■■■■□ 3.84
TDP1-216ENST00000556867 NUP160Q12769 1436 aa39.03■■■■□ 3.84
TDP1-216ENST00000556867 CUL7Q14999 1698 aa39.01■■■■□ 3.84
TDP1-216ENST00000556867 CEP170Q5SW79 1584 aa39■■■■□ 3.83
TDP1-216ENST00000556867 TRIM41Q8WV44 630 aa38.97■■■■□ 3.83
TDP1-216ENST00000556867 ARAP1Q96P48 1450 aa38.81■■■■□ 3.8
TDP1-216ENST00000556867 RUSC2Q8N2Y8 1516 aa38.81■■■■□ 3.8
TDP1-216ENST00000556867 CARMIL1Q5VZK9 1371 aa38.81■■■■□ 3.8
TDP1-216ENST00000556867 SHROOM2Q13796 1616 aa38.77■■■■□ 3.8
TDP1-216ENST00000556867 CYB5RLQ6IPT4 315 aa38.67■■■■□ 3.78
TDP1-216ENST00000556867 KIAA0586Q9BVV6 1533 aa38.63■■■■□ 3.77
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms