RNA–Protein interactions for RNA: ENST00000556742.1

IFT43-212, Transcript of intraflagellar transport 43, humanhuman

TSL 2 BASIC

Gene IFT43, Length 848 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT43-212ENST00000556742 NISCHQ9Y2I1 1504 aa26.33■■□□□ 1.81
IFT43-212ENST00000556742 CCDC180Q9P1Z9 1646 aa23.56■■□□□ 1.36
IFT43-212ENST00000556742 ABCC9O60706 1549 aa22.92■■□□□ 1.26
IFT43-212ENST00000556742 RB1CC1Q8TDY2 1594 aa22.13■■□□□ 1.13
IFT43-212ENST00000556742 NACADO15069 1562 aa22.09■■□□□ 1.13
IFT43-212ENST00000556742 MYO15BQ96JP2 1530 aa21.98■■□□□ 1.11
IFT43-212ENST00000556742 ZCCHC6Q5VYS8 1495 aaKnown RBP21.92■■□□□ 1.1
IFT43-212ENST00000556742 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
IFT43-212ENST00000556742 DCAF1Q9Y4B6 1507 aa21.85■■□□□ 1.09
IFT43-212ENST00000556742 UNC13AQ9UPW8 1703 aa21.73■■□□□ 1.07
IFT43-212ENST00000556742 BICRAQ9NZM4 1560 aa21.45■■□□□ 1.02
IFT43-212ENST00000556742 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
IFT43-212ENST00000556742 PABPN1Q86U42 306 aaKnown RBP eCLIP21.33■■□□□ 1.01
IFT43-212ENST00000556742 SHROOM4Q9ULL8 1493 aa21.28■■□□□ 1
IFT43-212ENST00000556742 DNAJC5BQ9UF47 199 aa21.03■□□□□ 0.96
IFT43-212ENST00000556742 EIF4G1Q04637 1599 aaKnown RBP20.89■□□□□ 0.93
IFT43-212ENST00000556742 CC2D2AQ9P2K1 1620 aa20.81■□□□□ 0.92
IFT43-212ENST00000556742 CECR2Q9BXF3 1484 aa20.62■□□□□ 0.89
IFT43-212ENST00000556742 SMARCA4P51532 1647 aa20.48■□□□□ 0.87
IFT43-212ENST00000556742 BAZ1AQ9NRL2 1556 aaPredicted RBP20.44■□□□□ 0.86
IFT43-212ENST00000556742 SMARCA2P51531 1590 aa20.35■□□□□ 0.85
IFT43-212ENST00000556742 NCAPD3P42695 1498 aa20.34■□□□□ 0.85
IFT43-212ENST00000556742 ATAD2BQ9ULI0 1458 aa20.32■□□□□ 0.84
IFT43-212ENST00000556742 PEG3Q9GZU2 1588 aa20.31■□□□□ 0.84
IFT43-212ENST00000556742 HMGXB3Q12766 1538 aa20.29■□□□□ 0.84
IFT43-212ENST00000556742 MROH2BQ7Z745 1585 aa20.26■□□□□ 0.83
IFT43-212ENST00000556742 BAZ1BQ9UIG0 1483 aaKnown RBP20.16■□□□□ 0.82
IFT43-212ENST00000556742 WIZO95785 1651 aa20.08■□□□□ 0.81
IFT43-212ENST00000556742 RSF1Q96T23 1441 aaPredicted RBP19.99■□□□□ 0.79
IFT43-212ENST00000556742 LAMC3Q9Y6N6 1575 aa19.88■□□□□ 0.77
IFT43-212ENST00000556742 TOP2AP11388 1531 aaKnown RBP19.86■□□□□ 0.77
IFT43-212ENST00000556742 NESP48681 1621 aa19.83■□□□□ 0.76
IFT43-212ENST00000556742 ERCC6Q03468 1493 aa19.78■□□□□ 0.76
IFT43-212ENST00000556742 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
IFT43-212ENST00000556742 KIF21AQ7Z4S6 1674 aa19.71■□□□□ 0.75
IFT43-212ENST00000556742 PDS5BQ9NTI5 1447 aa19.68■□□□□ 0.74
IFT43-212ENST00000556742 CUX2O14529 1486 aa19.66■□□□□ 0.74
IFT43-212ENST00000556742 THOC2Q8NI27 1593 aaKnown RBP19.64■□□□□ 0.73
IFT43-212ENST00000556742 PRDM2Q13029 1718 aa19.64■□□□□ 0.73
IFT43-212ENST00000556742 CFTRP13569 1480 aa19.61■□□□□ 0.73
IFT43-212ENST00000556742 CCDC88BA6NC98 1476 aa19.58■□□□□ 0.72
IFT43-212ENST00000556742 FANCD2Q9BXW9 1451 aa19.49■□□□□ 0.71
IFT43-212ENST00000556742 CEP164Q9UPV0 1460 aa19.49■□□□□ 0.71
IFT43-212ENST00000556742 MRC2Q9UBG0 1479 aa19.48■□□□□ 0.71
IFT43-212ENST00000556742 WDR62O43379 1518 aa19.46■□□□□ 0.71
IFT43-212ENST00000556742 AEBP2Q6ZN18 517 aaPredicted RBP19.35■□□□□ 0.69
IFT43-212ENST00000556742 SUPT5HO00267 1087 aaKnown RBP19.32■□□□□ 0.68
IFT43-212ENST00000556742 URB2Q14146 1524 aaKnown RBP19.3■□□□□ 0.68
IFT43-212ENST00000556742 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
IFT43-212ENST00000556742 DNMBPQ6XZF7 1577 aa19.2■□□□□ 0.66
IFT43-212ENST00000556742 TOPBP1Q92547 1522 aa19.19■□□□□ 0.66
IFT43-212ENST00000556742 IFT140Q96RY7 1462 aa19.09■□□□□ 0.65
IFT43-212ENST00000556742 DNAJC5Q9H3Z4 198 aa19.05■□□□□ 0.64
IFT43-212ENST00000556742 TARBP1Q13395 1621 aaKnown RBP19.04■□□□□ 0.64
IFT43-212ENST00000556742 POLA1P09884 1462 aaPredicted RBP19.02■□□□□ 0.63
IFT43-212ENST00000556742 CUX1P39880 1505 aa19.01■□□□□ 0.63
IFT43-212ENST00000556742 EIF4G3O43432 1585 aaKnown RBP18.98■□□□□ 0.63
IFT43-212ENST00000556742 ZNF608Q9ULD9 1512 aaPredicted RBP18.97■□□□□ 0.63
IFT43-212ENST00000556742 FGD5Q6ZNL6 1462 aa18.96■□□□□ 0.63
IFT43-212ENST00000556742 WDR97A6NE52 1622 aa18.95■□□□□ 0.62
IFT43-212ENST00000556742 BIVM-ERCC5R4GMW8 1640 aa18.92■□□□□ 0.62
IFT43-212ENST00000556742 SOGA1O94964 1423 aa18.91■□□□□ 0.62
IFT43-212ENST00000556742 TOP2BQ02880 1626 aa18.89■□□□□ 0.62
IFT43-212ENST00000556742 RAD54L2Q9Y4B4 1467 aa18.89■□□□□ 0.61
IFT43-212ENST00000556742 WRNQ14191 1432 aaPredicted RBP eCLIP18.85■□□□□ 0.61
IFT43-212ENST00000556742 SYNJ1O43426 1573 aa18.85■□□□□ 0.61
IFT43-212ENST00000556742 AQRO60306 1485 aaKnown RBP eCLIP18.84■□□□□ 0.61
IFT43-212ENST00000556742 ABCA10Q8WWZ4 1543 aa18.79■□□□□ 0.6
IFT43-212ENST00000556742 PBRM1Q86U86 1689 aa18.79■□□□□ 0.6
IFT43-212ENST00000556742 CHD1O14646 1710 aa18.79■□□□□ 0.6
IFT43-212ENST00000556742 TDRD9Q8NDG6 1382 aaKnown RBP18.78■□□□□ 0.6
IFT43-212ENST00000556742 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.6
IFT43-212ENST00000556742 OSCARQ8IYS5 282 aa18.75■□□□□ 0.59
IFT43-212ENST00000556742 GRIN2BQ13224 1484 aa18.73■□□□□ 0.59
IFT43-212ENST00000556742 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
IFT43-212ENST00000556742 MAGI1Q96QZ7 1491 aaPredicted RBP18.71■□□□□ 0.59
IFT43-212ENST00000556742 SNAPC4Q5SXM2 1469 aa18.69■□□□□ 0.58
IFT43-212ENST00000556742 SYNJ2O15056 1496 aa18.62■□□□□ 0.57
IFT43-212ENST00000556742 ERICH3Q5RHP9 1530 aa18.6■□□□□ 0.57
IFT43-212ENST00000556742 ADAMTS12P58397 1594 aa18.58■□□□□ 0.56
IFT43-212ENST00000556742 FBLN2P98095 1184 aa18.57■□□□□ 0.56
IFT43-212ENST00000556742 CHMP7Q8WUX9 453 aaPredicted RBP18.55■□□□□ 0.56
IFT43-212ENST00000556742 RIMBP3CA6NJZ7 1639 aa18.54■□□□□ 0.56
IFT43-212ENST00000556742 RIMBP3BA6NNM3 1639 aa18.54■□□□□ 0.56
IFT43-212ENST00000556742 RIMBP3Q9UFD9 1639 aa18.54■□□□□ 0.56
IFT43-212ENST00000556742 CLASP1Q7Z460 1538 aa18.54■□□□□ 0.56
IFT43-212ENST00000556742 ARHGEF11O15085 1522 aa18.5■□□□□ 0.55
IFT43-212ENST00000556742 GRIN2AQ12879 1464 aa18.5■□□□□ 0.55
IFT43-212ENST00000556742 FHAD1B1AJZ9 1412 aa18.49■□□□□ 0.55
IFT43-212ENST00000556742 KIF27Q86VH2 1401 aa18.47■□□□□ 0.55
IFT43-212ENST00000556742 CUL7Q14999 1698 aa18.46■□□□□ 0.55
IFT43-212ENST00000556742 CEP170Q5SW79 1584 aa18.42■□□□□ 0.54
IFT43-212ENST00000556742 NUP160Q12769 1436 aa18.41■□□□□ 0.54
IFT43-212ENST00000556742 IGF1RP08069 1367 aa18.37■□□□□ 0.53
IFT43-212ENST00000556742 SHROOM2Q13796 1616 aa18.36■□□□□ 0.53
IFT43-212ENST00000556742 ARAP1Q96P48 1450 aa18.33■□□□□ 0.52
IFT43-212ENST00000556742 TRIM41Q8WV44 630 aa18.32■□□□□ 0.52
IFT43-212ENST00000556742 RUSC2Q8N2Y8 1516 aa18.32■□□□□ 0.52
IFT43-212ENST00000556742 CARMIL1Q5VZK9 1371 aa18.27■□□□□ 0.51
IFT43-212ENST00000556742 CYB5RLQ6IPT4 315 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms