RNA–Protein interactions for RNA: ENST00000556707.5

SDR39U1-221, Transcript of short chain dehydrogenase/reductase family 39U member 1, humanhuman

TSL 2

Gene SDR39U1, Length 1,196 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDR39U1-221ENST00000556707 NISCHQ9Y2I1 1504 aa59.48■■■■■ 7.11
SDR39U1-221ENST00000556707 CCDC180Q9P1Z9 1646 aa52.86■■■■■ 6.05
SDR39U1-221ENST00000556707 ABCC9O60706 1549 aa51.51■■■■■ 5.84
SDR39U1-221ENST00000556707 RB1CC1Q8TDY2 1594 aa49.65■■■■■ 5.54
SDR39U1-221ENST00000556707 NACADO15069 1562 aa49.64■■■■■ 5.54
SDR39U1-221ENST00000556707 DCAF8L2P0C7V8 631 aa49.58■■■■■ 5.53
SDR39U1-221ENST00000556707 ZCCHC6Q5VYS8 1495 aaKnown RBP49.57■■■■■ 5.53
SDR39U1-221ENST00000556707 MYO15BQ96JP2 1530 aa49.39■■■■■ 5.5
SDR39U1-221ENST00000556707 DCAF1Q9Y4B6 1507 aa49.24■■■■■ 5.47
SDR39U1-221ENST00000556707 UNC13AQ9UPW8 1703 aa48.61■■■■■ 5.37
SDR39U1-221ENST00000556707 SCRIBQ14160 1630 aa48.21■■■■■ 5.31
SDR39U1-221ENST00000556707 BICRAQ9NZM4 1560 aa48.15■■■■■ 5.3
SDR39U1-221ENST00000556707 PABPN1Q86U42 306 aaKnown RBP eCLIP48.14■■■■■ 5.32e-8■□□□□ 11.2
SDR39U1-221ENST00000556707 SHROOM4Q9ULL8 1493 aa47.65■■■■■ 5.22
SDR39U1-221ENST00000556707 DNAJC5BQ9UF47 199 aa47.13■■■■■ 5.14
SDR39U1-221ENST00000556707 EIF4G1Q04637 1599 aaKnown RBP46.85■■■■■ 5.09
SDR39U1-221ENST00000556707 CC2D2AQ9P2K1 1620 aa46.64■■■■■ 5.06
SDR39U1-221ENST00000556707 CECR2Q9BXF3 1484 aa46.31■■■■■ 5
SDR39U1-221ENST00000556707 SMARCA4P51532 1647 aa46.14■■■■■ 4.98
SDR39U1-221ENST00000556707 BAZ1AQ9NRL2 1556 aaPredicted RBP46.09■■■■■ 4.97
SDR39U1-221ENST00000556707 MROH2BQ7Z745 1585 aa45.84■■■■■ 4.93
SDR39U1-221ENST00000556707 ATAD2BQ9ULI0 1458 aa45.82■■■■■ 4.93
SDR39U1-221ENST00000556707 SMARCA2P51531 1590 aa45.79■■■■■ 4.92
SDR39U1-221ENST00000556707 NCAPD3P42695 1498 aa45.78■■■■■ 4.92
SDR39U1-221ENST00000556707 PEG3Q9GZU2 1588 aa45.69■■■■■ 4.9
SDR39U1-221ENST00000556707 HMGXB3Q12766 1538 aa45.59■■■■■ 4.89
SDR39U1-221ENST00000556707 BAZ1BQ9UIG0 1483 aaKnown RBP45.46■■■■■ 4.87
SDR39U1-221ENST00000556707 WIZO95785 1651 aa45.38■■■■■ 4.86
SDR39U1-221ENST00000556707 RSF1Q96T23 1441 aaPredicted RBP45.36■■■■■ 4.85
SDR39U1-221ENST00000556707 TOP2AP11388 1531 aaKnown RBP44.89■■■■■ 4.78
SDR39U1-221ENST00000556707 NESP48681 1621 aa44.63■■■■■ 4.73
SDR39U1-221ENST00000556707 LAMC3Q9Y6N6 1575 aa44.56■■■■■ 4.72
SDR39U1-221ENST00000556707 CADPSQ9ULU8 1353 aa44.44■■■■■ 4.71
SDR39U1-221ENST00000556707 ERCC6Q03468 1493 aa44.39■■■■■ 4.7
SDR39U1-221ENST00000556707 CCDC88BA6NC98 1476 aa44.35■■■■■ 4.69
SDR39U1-221ENST00000556707 SUPT5HO00267 1087 aaKnown RBP44.3■■■■■ 4.68
SDR39U1-221ENST00000556707 PDS5BQ9NTI5 1447 aa44.24■■■■■ 4.67
SDR39U1-221ENST00000556707 CFTRP13569 1480 aa44.22■■■■■ 4.67
SDR39U1-221ENST00000556707 KIF21AQ7Z4S6 1674 aa44.16■■■■■ 4.66
SDR39U1-221ENST00000556707 PRDM2Q13029 1718 aa44.01■■■■■ 4.64
SDR39U1-221ENST00000556707 THOC2Q8NI27 1593 aaKnown RBP43.95■■■■■ 4.63
SDR39U1-221ENST00000556707 FANCD2Q9BXW9 1451 aa43.94■■■■■ 4.62
SDR39U1-221ENST00000556707 CUX2O14529 1486 aa43.88■■■■■ 4.61
SDR39U1-221ENST00000556707 CEP164Q9UPV0 1460 aa43.87■■■■■ 4.61
SDR39U1-221ENST00000556707 MRC2Q9UBG0 1479 aa43.77■■■■■ 4.6
SDR39U1-221ENST00000556707 WDR62O43379 1518 aa43.64■■■■■ 4.58
SDR39U1-221ENST00000556707 URB2Q14146 1524 aaKnown RBP43.5■■■■■ 4.55
SDR39U1-221ENST00000556707 ABCC8Q09428 1581 aa43.28■■■■■ 4.52
SDR39U1-221ENST00000556707 TOPBP1Q92547 1522 aa43.27■■■■■ 4.52
SDR39U1-221ENST00000556707 DNMBPQ6XZF7 1577 aa43.24■■■■■ 4.51
SDR39U1-221ENST00000556707 CUX1P39880 1505 aa43■■■■■ 4.47
SDR39U1-221ENST00000556707 IFT140Q96RY7 1462 aa42.94■■■■■ 4.47
SDR39U1-221ENST00000556707 POLA1P09884 1462 aaPredicted RBP42.9■■■■■ 4.46
SDR39U1-221ENST00000556707 FGD5Q6ZNL6 1462 aa42.82■■■■■ 4.45
SDR39U1-221ENST00000556707 TARBP1Q13395 1621 aaKnown RBP42.8■■■■■ 4.44
SDR39U1-221ENST00000556707 WRNQ14191 1432 aaPredicted RBP eCLIP42.76■■■■■ 4.44
SDR39U1-221ENST00000556707 ZNF608Q9ULD9 1512 aaPredicted RBP42.73■■■■■ 4.43
SDR39U1-221ENST00000556707 SOGA1O94964 1423 aa42.72■■■■■ 4.43
SDR39U1-221ENST00000556707 RAD54L2Q9Y4B4 1467 aa42.71■■■■■ 4.43
SDR39U1-221ENST00000556707 BIVM-ERCC5R4GMW8 1640 aa42.7■■■■■ 4.43
SDR39U1-221ENST00000556707 TOP2BQ02880 1626 aa42.68■■■■■ 4.42
SDR39U1-221ENST00000556707 SYNJ1O43426 1573 aa42.67■■■■■ 4.42
SDR39U1-221ENST00000556707 EIF4G3O43432 1585 aaKnown RBP42.6■■■■■ 4.41
SDR39U1-221ENST00000556707 AQRO60306 1485 aaKnown RBP eCLIP42.51■■■■■ 4.4
SDR39U1-221ENST00000556707 WDR97A6NE52 1622 aa42.51■■■■■ 4.4
SDR39U1-221ENST00000556707 TDRD9Q8NDG6 1382 aaKnown RBP42.45■■■■■ 4.39
SDR39U1-221ENST00000556707 ABCA10Q8WWZ4 1543 aa42.42■■■■■ 4.38
SDR39U1-221ENST00000556707 DNAJC5Q9H3Z4 198 aa42.34■■■■■ 4.37
SDR39U1-221ENST00000556707 ABCA5Q8WWZ7 1642 aa42.26■■■■■ 4.36
SDR39U1-221ENST00000556707 GAPVD1Q14C86 1478 aa42.24■■■■■ 4.35
SDR39U1-221ENST00000556707 GRIN2BQ13224 1484 aa42.21■■■■■ 4.35
SDR39U1-221ENST00000556707 PBRM1Q86U86 1689 aa42.2■■■■■ 4.35
SDR39U1-221ENST00000556707 SNAPC4Q5SXM2 1469 aa42.12■■■■■ 4.33
SDR39U1-221ENST00000556707 MAGI1Q96QZ7 1491 aaPredicted RBP42.1■■■■■ 4.33
SDR39U1-221ENST00000556707 OSCARQ8IYS5 282 aa42.08■■■■■ 4.33
SDR39U1-221ENST00000556707 CHD1O14646 1710 aa42.08■■■■■ 4.33
SDR39U1-221ENST00000556707 FBLN2P98095 1184 aa41.95■■■■■ 4.31
SDR39U1-221ENST00000556707 ERICH3Q5RHP9 1530 aa41.93■■■■■ 4.3
SDR39U1-221ENST00000556707 SYNJ2O15056 1496 aa41.92■■■■■ 4.3
SDR39U1-221ENST00000556707 CHMP7Q8WUX9 453 aaPredicted RBP41.87■■■■■ 4.29
SDR39U1-221ENST00000556707 KIF27Q86VH2 1401 aa41.86■■■■■ 4.29
SDR39U1-221ENST00000556707 TRIM41Q8WV44 630 aa41.84■■■■■ 4.29
SDR39U1-221ENST00000556707 ADAMTS12P58397 1594 aa41.84■■■■■ 4.29
SDR39U1-221ENST00000556707 FHAD1B1AJZ9 1412 aa41.76■■■■■ 4.28
SDR39U1-221ENST00000556707 GRIN2AQ12879 1464 aa41.67■■■■■ 4.26
SDR39U1-221ENST00000556707 IGF1RP08069 1367 aa41.67■■■■■ 4.26
SDR39U1-221ENST00000556707 CUL7Q14999 1698 aa41.6■■■■■ 4.25
SDR39U1-221ENST00000556707 CLASP1Q7Z460 1538 aa41.58■■■■■ 4.25
SDR39U1-221ENST00000556707 RUSC2Q8N2Y8 1516 aa41.53■■■■■ 4.24
SDR39U1-221ENST00000556707 NUP160Q12769 1436 aa41.48■■■■■ 4.23
SDR39U1-221ENST00000556707 CEP170Q5SW79 1584 aa41.46■■■■■ 4.23
SDR39U1-221ENST00000556707 CHIC1Q5VXU3 224 aa41.45■■■■■ 4.23
SDR39U1-221ENST00000556707 CARMIL1Q5VZK9 1371 aa41.44■■■■■ 4.22
SDR39U1-221ENST00000556707 RIMBP3CA6NJZ7 1639 aa41.42■■■■■ 4.22
SDR39U1-221ENST00000556707 RIMBP3BA6NNM3 1639 aa41.42■■■■■ 4.22
SDR39U1-221ENST00000556707 RIMBP3Q9UFD9 1639 aa41.42■■■■■ 4.22
SDR39U1-221ENST00000556707 ARHGEF11O15085 1522 aa41.41■■■■■ 4.22
SDR39U1-221ENST00000556707 RAPGEF2Q9Y4G8 1499 aa41.21■■■■■ 4.19
SDR39U1-221ENST00000556707 SHROOM2Q13796 1616 aa41.18■■■■■ 4.18
SDR39U1-221ENST00000556707 EEA1Q15075 1411 aa41.17■■■■■ 4.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms