RNA–Protein interactions for RNA: ENST00000556607.1

SPTLC2-205, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 3

Gene SPTLC2, Length 460 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-205ENST00000556607 NISCHQ9Y2I1 1504 aa26.08■■□□□ 1.77
SPTLC2-205ENST00000556607 CCDC180Q9P1Z9 1646 aa23.36■■□□□ 1.33
SPTLC2-205ENST00000556607 ABCC9O60706 1549 aa23.27■■□□□ 1.32
SPTLC2-205ENST00000556607 RB1CC1Q8TDY2 1594 aa22.2■■□□□ 1.14
SPTLC2-205ENST00000556607 DCAF8L2P0C7V8 631 aa22.14■■□□□ 1.13
SPTLC2-205ENST00000556607 NACADO15069 1562 aa22.04■■□□□ 1.12
SPTLC2-205ENST00000556607 UNC13AQ9UPW8 1703 aa21.73■■□□□ 1.07
SPTLC2-205ENST00000556607 MYO15BQ96JP2 1530 aa21.7■■□□□ 1.07
SPTLC2-205ENST00000556607 PABPN1Q86U42 306 aaKnown RBP eCLIP21.69■■□□□ 1.06
SPTLC2-205ENST00000556607 ZCCHC6Q5VYS8 1495 aaKnown RBP21.63■■□□□ 1.05
SPTLC2-205ENST00000556607 DNAJC5BQ9UF47 199 aa21.62■■□□□ 1.05
SPTLC2-205ENST00000556607 DCAF1Q9Y4B6 1507 aa21.5■■□□□ 1.03
SPTLC2-205ENST00000556607 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
SPTLC2-205ENST00000556607 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
SPTLC2-205ENST00000556607 SHROOM4Q9ULL8 1493 aa21.17■□□□□ 0.98
SPTLC2-205ENST00000556607 CC2D2AQ9P2K1 1620 aa21.01■□□□□ 0.95
SPTLC2-205ENST00000556607 EIF4G1Q04637 1599 aaKnown RBP20.97■□□□□ 0.95
SPTLC2-205ENST00000556607 CECR2Q9BXF3 1484 aa20.91■□□□□ 0.94
SPTLC2-205ENST00000556607 SMARCA4P51532 1647 aa20.35■□□□□ 0.85
SPTLC2-205ENST00000556607 NCAPD3P42695 1498 aa20.3■□□□□ 0.84
SPTLC2-205ENST00000556607 ATAD2BQ9ULI0 1458 aa20.29■□□□□ 0.84
SPTLC2-205ENST00000556607 SMARCA2P51531 1590 aa20.27■□□□□ 0.84
SPTLC2-205ENST00000556607 BAZ1AQ9NRL2 1556 aaPredicted RBP20.26■□□□□ 0.83
SPTLC2-205ENST00000556607 HMGXB3Q12766 1538 aa20.19■□□□□ 0.82
SPTLC2-205ENST00000556607 BAZ1BQ9UIG0 1483 aaKnown RBP20.16■□□□□ 0.82
SPTLC2-205ENST00000556607 MROH2BQ7Z745 1585 aa20.11■□□□□ 0.81
SPTLC2-205ENST00000556607 ERCC6Q03468 1493 aa20.11■□□□□ 0.81
SPTLC2-205ENST00000556607 PEG3Q9GZU2 1588 aa20.08■□□□□ 0.8
SPTLC2-205ENST00000556607 NESP48681 1621 aa20.01■□□□□ 0.79
SPTLC2-205ENST00000556607 WIZO95785 1651 aa19.94■□□□□ 0.78
SPTLC2-205ENST00000556607 CUX2O14529 1486 aa19.93■□□□□ 0.78
SPTLC2-205ENST00000556607 LAMC3Q9Y6N6 1575 aa19.89■□□□□ 0.77
SPTLC2-205ENST00000556607 KIF21AQ7Z4S6 1674 aa19.8■□□□□ 0.76
SPTLC2-205ENST00000556607 PDS5BQ9NTI5 1447 aa19.76■□□□□ 0.75
SPTLC2-205ENST00000556607 DNAJC5Q9H3Z4 198 aa19.76■□□□□ 0.75
SPTLC2-205ENST00000556607 THOC2Q8NI27 1593 aaKnown RBP19.74■□□□□ 0.75
SPTLC2-205ENST00000556607 CADPSQ9ULU8 1353 aa19.73■□□□□ 0.75
SPTLC2-205ENST00000556607 RSF1Q96T23 1441 aaPredicted RBP19.73■□□□□ 0.75
SPTLC2-205ENST00000556607 TOP2AP11388 1531 aaKnown RBP19.64■□□□□ 0.73
SPTLC2-205ENST00000556607 MRC2Q9UBG0 1479 aa19.57■□□□□ 0.72
SPTLC2-205ENST00000556607 CEP164Q9UPV0 1460 aa19.55■□□□□ 0.72
SPTLC2-205ENST00000556607 FANCD2Q9BXW9 1451 aa19.54■□□□□ 0.72
SPTLC2-205ENST00000556607 CFTRP13569 1480 aa19.51■□□□□ 0.71
SPTLC2-205ENST00000556607 WDR62O43379 1518 aa19.5■□□□□ 0.71
SPTLC2-205ENST00000556607 PRDM2Q13029 1718 aa19.44■□□□□ 0.7
SPTLC2-205ENST00000556607 CCDC88BA6NC98 1476 aa19.42■□□□□ 0.7
SPTLC2-205ENST00000556607 URB2Q14146 1524 aaKnown RBP19.34■□□□□ 0.69
SPTLC2-205ENST00000556607 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
SPTLC2-205ENST00000556607 ABCC8Q09428 1581 aa19.15■□□□□ 0.66
SPTLC2-205ENST00000556607 IFT140Q96RY7 1462 aa19.13■□□□□ 0.65
SPTLC2-205ENST00000556607 DNMBPQ6XZF7 1577 aa19.12■□□□□ 0.65
SPTLC2-205ENST00000556607 SUPT5HO00267 1087 aaKnown RBP19.12■□□□□ 0.65
SPTLC2-205ENST00000556607 OSCARQ8IYS5 282 aa19.11■□□□□ 0.65
SPTLC2-205ENST00000556607 ZNF608Q9ULD9 1512 aaPredicted RBP19.09■□□□□ 0.65
SPTLC2-205ENST00000556607 TRIM41Q8WV44 630 aa19.08■□□□□ 0.64
SPTLC2-205ENST00000556607 EIF4G3O43432 1585 aaKnown RBP19.02■□□□□ 0.64
SPTLC2-205ENST00000556607 POLA1P09884 1462 aaPredicted RBP18.97■□□□□ 0.63
SPTLC2-205ENST00000556607 TARBP1Q13395 1621 aaKnown RBP18.97■□□□□ 0.63
SPTLC2-205ENST00000556607 AQRO60306 1485 aaKnown RBP eCLIP18.96■□□□□ 0.63
SPTLC2-205ENST00000556607 RAD54L2Q9Y4B4 1467 aa18.93■□□□□ 0.62
SPTLC2-205ENST00000556607 SOGA1O94964 1423 aa18.92■□□□□ 0.62
SPTLC2-205ENST00000556607 FBLN2P98095 1184 aa18.91■□□□□ 0.62
SPTLC2-205ENST00000556607 FGD5Q6ZNL6 1462 aa18.9■□□□□ 0.62
SPTLC2-205ENST00000556607 CHD1O14646 1710 aa18.9■□□□□ 0.62
SPTLC2-205ENST00000556607 CUX1P39880 1505 aa18.89■□□□□ 0.61
SPTLC2-205ENST00000556607 TDRD9Q8NDG6 1382 aaKnown RBP18.87■□□□□ 0.61
SPTLC2-205ENST00000556607 RIMBP3CA6NJZ7 1639 aa18.85■□□□□ 0.61
SPTLC2-205ENST00000556607 RIMBP3BA6NNM3 1639 aa18.85■□□□□ 0.61
SPTLC2-205ENST00000556607 RIMBP3Q9UFD9 1639 aa18.85■□□□□ 0.61
SPTLC2-205ENST00000556607 WDR97A6NE52 1622 aa18.78■□□□□ 0.6
SPTLC2-205ENST00000556607 SNAPC4Q5SXM2 1469 aa18.77■□□□□ 0.6
SPTLC2-205ENST00000556607 ARHGEF11O15085 1522 aa18.76■□□□□ 0.59
SPTLC2-205ENST00000556607 CHMP7Q8WUX9 453 aaPredicted RBP18.75■□□□□ 0.59
SPTLC2-205ENST00000556607 PBRM1Q86U86 1689 aa18.73■□□□□ 0.59
SPTLC2-205ENST00000556607 GRIN2BQ13224 1484 aa18.72■□□□□ 0.59
SPTLC2-205ENST00000556607 GAPVD1Q14C86 1478 aa18.7■□□□□ 0.58
SPTLC2-205ENST00000556607 MAGI1Q96QZ7 1491 aaPredicted RBP18.7■□□□□ 0.58
SPTLC2-205ENST00000556607 CYB5RLQ6IPT4 315 aa18.68■□□□□ 0.58
SPTLC2-205ENST00000556607 ABCA10Q8WWZ4 1543 aa18.66■□□□□ 0.58
SPTLC2-205ENST00000556607 SYNJ1O43426 1573 aa18.66■□□□□ 0.58
SPTLC2-205ENST00000556607 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
SPTLC2-205ENST00000556607 BIVM-ERCC5R4GMW8 1640 aa18.65■□□□□ 0.58
SPTLC2-205ENST00000556607 SYNJ2O15056 1496 aa18.64■□□□□ 0.57
SPTLC2-205ENST00000556607 TOP2BQ02880 1626 aa18.63■□□□□ 0.57
SPTLC2-205ENST00000556607 ABCA5Q8WWZ7 1642 aa18.63■□□□□ 0.57
SPTLC2-205ENST00000556607 CLASP1Q7Z460 1538 aa18.59■□□□□ 0.57
SPTLC2-205ENST00000556607 ARAP1Q96P48 1450 aa18.58■□□□□ 0.56
SPTLC2-205ENST00000556607 TRHP20396 242 aaPredicted RBP18.5■□□□□ 0.55
SPTLC2-205ENST00000556607 ADAMTS12P58397 1594 aa18.49■□□□□ 0.55
SPTLC2-205ENST00000556607 GRIN2AQ12879 1464 aa18.48■□□□□ 0.55
SPTLC2-205ENST00000556607 FHAD1B1AJZ9 1412 aa18.45■□□□□ 0.54
SPTLC2-205ENST00000556607 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
SPTLC2-205ENST00000556607 CEP170Q5SW79 1584 aa18.42■□□□□ 0.54
SPTLC2-205ENST00000556607 NUP160Q12769 1436 aa18.37■□□□□ 0.53
SPTLC2-205ENST00000556607 ERCC6L2Q5T890 1561 aa18.34■□□□□ 0.53
SPTLC2-205ENST00000556607 SHROOM2Q13796 1616 aa18.29■□□□□ 0.52
SPTLC2-205ENST00000556607 KIF27Q86VH2 1401 aa18.29■□□□□ 0.52
SPTLC2-205ENST00000556607 JPH4Q96JJ6 628 aa18.26■□□□□ 0.51
SPTLC2-205ENST00000556607 CUL7Q14999 1698 aa18.25■□□□□ 0.51
SPTLC2-205ENST00000556607 PRG4Q92954 1404 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms