RNA–Protein interactions for RNA: ENST00000556462.1

LINC01550-206, Transcript of long intergenic non-protein coding RNA 1550, humanhuman

TSL 2 BASIC

Gene LINC01550, Length 2,098 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01550-206ENST00000556462 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
LINC01550-206ENST00000556462 CCDC180Q9P1Z9 1646 aa21.64■■□□□ 1.06
LINC01550-206ENST00000556462 ZCCHC6Q5VYS8 1495 aaKnown RBP20.83■□□□□ 0.93
LINC01550-206ENST00000556462 ABCC9O60706 1549 aa20.63■□□□□ 0.89
LINC01550-206ENST00000556462 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
LINC01550-206ENST00000556462 DCAF1Q9Y4B6 1507 aa20.53■□□□□ 0.88
LINC01550-206ENST00000556462 MYO15BQ96JP2 1530 aa20.34■□□□□ 0.85
LINC01550-206ENST00000556462 NACADO15069 1562 aa20.23■□□□□ 0.83
LINC01550-206ENST00000556462 SHROOM4Q9ULL8 1493 aa20.18■□□□□ 0.82
LINC01550-206ENST00000556462 RB1CC1Q8TDY2 1594 aa20.06■□□□□ 0.8
LINC01550-206ENST00000556462 SCRIBQ14160 1630 aa19.91■□□□□ 0.78
LINC01550-206ENST00000556462 UNC13AQ9UPW8 1703 aa19.63■□□□□ 0.73
LINC01550-206ENST00000556462 BICRAQ9NZM4 1560 aa19.49■□□□□ 0.71
LINC01550-206ENST00000556462 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
LINC01550-206ENST00000556462 SUPT5HO00267 1087 aaKnown RBP19.37■□□□□ 0.69
LINC01550-206ENST00000556462 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.69
LINC01550-206ENST00000556462 RSF1Q96T23 1441 aaPredicted RBP19.25■□□□□ 0.67
LINC01550-206ENST00000556462 MROH2BQ7Z745 1585 aa19.19■□□□□ 0.66
LINC01550-206ENST00000556462 BAZ1AQ9NRL2 1556 aaPredicted RBP19.16■□□□□ 0.66
LINC01550-206ENST00000556462 SMARCA4P51532 1647 aa19.08■□□□□ 0.65
LINC01550-206ENST00000556462 WIZO95785 1651 aa18.99■□□□□ 0.63
LINC01550-206ENST00000556462 EIF4G1Q04637 1599 aaKnown RBP18.9■□□□□ 0.62
LINC01550-206ENST00000556462 PEG3Q9GZU2 1588 aa18.88■□□□□ 0.61
LINC01550-206ENST00000556462 ATAD2BQ9ULI0 1458 aa18.84■□□□□ 0.61
LINC01550-206ENST00000556462 TOP2AP11388 1531 aaKnown RBP18.79■□□□□ 0.6
LINC01550-206ENST00000556462 SMARCA2P51531 1590 aa18.79■□□□□ 0.6
LINC01550-206ENST00000556462 NCAPD3P42695 1498 aa18.71■□□□□ 0.59
LINC01550-206ENST00000556462 BAZ1BQ9UIG0 1483 aaKnown RBP18.7■□□□□ 0.58
LINC01550-206ENST00000556462 CC2D2AQ9P2K1 1620 aa18.65■□□□□ 0.58
LINC01550-206ENST00000556462 CCDC88BA6NC98 1476 aa18.64■□□□□ 0.57
LINC01550-206ENST00000556462 HMGXB3Q12766 1538 aa18.63■□□□□ 0.57
LINC01550-206ENST00000556462 CHIC1Q5VXU3 224 aa18.51■□□□□ 0.55
LINC01550-206ENST00000556462 DNAJC5BQ9UF47 199 aa18.38■□□□□ 0.53
LINC01550-206ENST00000556462 CFTRP13569 1480 aa18.26■□□□□ 0.51
LINC01550-206ENST00000556462 TRIM41Q8WV44 630 aa18.22■□□□□ 0.51
LINC01550-206ENST00000556462 CADPSQ9ULU8 1353 aa18.22■□□□□ 0.51
LINC01550-206ENST00000556462 ABCC8Q09428 1581 aa18.18■□□□□ 0.5
LINC01550-206ENST00000556462 WRNQ14191 1432 aaPredicted RBP eCLIP18.09■□□□□ 0.49
LINC01550-206ENST00000556462 NESP48681 1621 aa18.08■□□□□ 0.49
LINC01550-206ENST00000556462 LAMC3Q9Y6N6 1575 aa18.05■□□□□ 0.48
LINC01550-206ENST00000556462 PRDM2Q13029 1718 aa18.04■□□□□ 0.48
LINC01550-206ENST00000556462 SYNJ1O43426 1573 aa18■□□□□ 0.47
LINC01550-206ENST00000556462 FANCD2Q9BXW9 1451 aa18■□□□□ 0.47
LINC01550-206ENST00000556462 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
LINC01550-206ENST00000556462 CUX1P39880 1505 aa17.93■□□□□ 0.46
LINC01550-206ENST00000556462 PDS5BQ9NTI5 1447 aa17.93■□□□□ 0.46
LINC01550-206ENST00000556462 BIVM-ERCC5R4GMW8 1640 aa17.9■□□□□ 0.46
LINC01550-206ENST00000556462 FAM9AQ8IZU1 332 aaPredicted RBP17.88■□□□□ 0.45
LINC01550-206ENST00000556462 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
LINC01550-206ENST00000556462 SOGA1O94964 1423 aa17.86■□□□□ 0.45
LINC01550-206ENST00000556462 LOC105371045A0A1W2PR82 267 aa17.81■□□□□ 0.44
LINC01550-206ENST00000556462 KIF21AQ7Z4S6 1674 aa17.81■□□□□ 0.44
LINC01550-206ENST00000556462 RUSC2Q8N2Y8 1516 aa17.8■□□□□ 0.44
LINC01550-206ENST00000556462 DNMBPQ6XZF7 1577 aa17.79■□□□□ 0.44
LINC01550-206ENST00000556462 TOPBP1Q92547 1522 aa17.79■□□□□ 0.44
LINC01550-206ENST00000556462 URB2Q14146 1524 aaKnown RBP17.78■□□□□ 0.44
LINC01550-206ENST00000556462 EEA1Q15075 1411 aa17.76■□□□□ 0.43
LINC01550-206ENST00000556462 FGD5Q6ZNL6 1462 aa17.76■□□□□ 0.43
LINC01550-206ENST00000556462 CSRNP3Q8WYN3 585 aa17.72■□□□□ 0.43
LINC01550-206ENST00000556462 POLA1P09884 1462 aaPredicted RBP17.7■□□□□ 0.42
LINC01550-206ENST00000556462 MRC2Q9UBG0 1479 aa17.69■□□□□ 0.42
LINC01550-206ENST00000556462 ERCC6Q03468 1493 aa17.67■□□□□ 0.42
LINC01550-206ENST00000556462 RAD54L2Q9Y4B4 1467 aa17.65■□□□□ 0.42
LINC01550-206ENST00000556462 KIF27Q86VH2 1401 aa17.64■□□□□ 0.41
LINC01550-206ENST00000556462 EHMT2Q96KQ7 1210 aa17.63■□□□□ 0.41
LINC01550-206ENST00000556462 CUX2O14529 1486 aa17.62■□□□□ 0.41
LINC01550-206ENST00000556462 ABCA10Q8WWZ4 1543 aa17.61■□□□□ 0.41
LINC01550-206ENST00000556462 WDR62O43379 1518 aa17.6■□□□□ 0.41
LINC01550-206ENST00000556462 THOC2Q8NI27 1593 aaKnown RBP17.56■□□□□ 0.4
LINC01550-206ENST00000556462 IGF1RP08069 1367 aa17.55■□□□□ 0.4
LINC01550-206ENST00000556462 TARBP1Q13395 1621 aaKnown RBP17.52■□□□□ 0.4
LINC01550-206ENST00000556462 PRXQ9BXM0 1461 aa17.52■□□□□ 0.39
LINC01550-206ENST00000556462 KIF21BO75037 1637 aa17.51■□□□□ 0.39
LINC01550-206ENST00000556462 WDR97A6NE52 1622 aa17.51■□□□□ 0.39
LINC01550-206ENST00000556462 TDRD9Q8NDG6 1382 aaKnown RBP17.5■□□□□ 0.39
LINC01550-206ENST00000556462 GOLGA3Q08378 1498 aa17.5■□□□□ 0.39
LINC01550-206ENST00000556462 RAPGEF2Q9Y4G8 1499 aa17.49■□□□□ 0.39
LINC01550-206ENST00000556462 IFT140Q96RY7 1462 aa17.46■□□□□ 0.39
LINC01550-206ENST00000556462 TNIKQ9UKE5 1360 aa17.46■□□□□ 0.39
LINC01550-206ENST00000556462 UBTFP17480 764 aaKnown RBP17.46■□□□□ 0.39
LINC01550-206ENST00000556462 ABCA5Q8WWZ7 1642 aa17.44■□□□□ 0.38
LINC01550-206ENST00000556462 GAPVD1Q14C86 1478 aa17.44■□□□□ 0.38
LINC01550-206ENST00000556462 CARMIL1Q5VZK9 1371 aa17.43■□□□□ 0.38
LINC01550-206ENST00000556462 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
LINC01550-206ENST00000556462 AQRO60306 1485 aaKnown RBP eCLIP17.41■□□□□ 0.38
LINC01550-206ENST00000556462 ZNF608Q9ULD9 1512 aaPredicted RBP17.39■□□□□ 0.38
LINC01550-206ENST00000556462 CEP162Q5TB80 1403 aa17.34■□□□□ 0.37
LINC01550-206ENST00000556462 CUL7Q14999 1698 aa17.32■□□□□ 0.36
LINC01550-206ENST00000556462 GRIN2BQ13224 1484 aa17.32■□□□□ 0.36
LINC01550-206ENST00000556462 PBRM1Q86U86 1689 aa17.28■□□□□ 0.36
LINC01550-206ENST00000556462 EIF4G3O43432 1585 aaKnown RBP17.28■□□□□ 0.36
LINC01550-206ENST00000556462 FHAD1B1AJZ9 1412 aa17.25■□□□□ 0.35
LINC01550-206ENST00000556462 CLIP1P30622 1438 aa17.24■□□□□ 0.35
LINC01550-206ENST00000556462 ADAMTS12P58397 1594 aa17.21■□□□□ 0.35
LINC01550-206ENST00000556462 SNAPC4Q5SXM2 1469 aa17.21■□□□□ 0.35
LINC01550-206ENST00000556462 RANGAP1P46060 587 aaPredicted RBP17.2■□□□□ 0.34
LINC01550-206ENST00000556462 MAGI1Q96QZ7 1491 aaPredicted RBP17.17■□□□□ 0.34
LINC01550-206ENST00000556462 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
LINC01550-206ENST00000556462 ARHGAP35Q9NRY4 1499 aa17.11■□□□□ 0.33
LINC01550-206ENST00000556462 CHMP7Q8WUX9 453 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms