RNA–Protein interactions for RNA: ENST00000556164.5

PRKCH-220, Transcript of protein kinase C eta, humanhuman

TSL 3

Gene PRKCH, Length 429 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-220ENST00000556164 NISCHQ9Y2I1 1504 aa14.76□□□□□ -0.05
PRKCH-220ENST00000556164 CHIC1Q5VXU3 224 aa13.57□□□□□ -0.24
PRKCH-220ENST00000556164 ABCC9O60706 1549 aa13.47□□□□□ -0.25
PRKCH-220ENST00000556164 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
PRKCH-220ENST00000556164 AEBP2Q6ZN18 517 aaPredicted RBP13.03□□□□□ -0.32
PRKCH-220ENST00000556164 RB1CC1Q8TDY2 1594 aa12.77□□□□□ -0.37
PRKCH-220ENST00000556164 DNAJC5BQ9UF47 199 aa12.72□□□□□ -0.37
PRKCH-220ENST00000556164 NACADO15069 1562 aa12.63□□□□□ -0.39
PRKCH-220ENST00000556164 UNC13AQ9UPW8 1703 aa12.54□□□□□ -0.4
PRKCH-220ENST00000556164 DCAF8L2P0C7V8 631 aa12.53□□□□□ -0.4
PRKCH-220ENST00000556164 PABPN1Q86U42 306 aaKnown RBP eCLIP12.5□□□□□ -0.41
PRKCH-220ENST00000556164 BICRAQ9NZM4 1560 aa12.39□□□□□ -0.43
PRKCH-220ENST00000556164 MYO15BQ96JP2 1530 aa12.37□□□□□ -0.43
PRKCH-220ENST00000556164 ZCCHC6Q5VYS8 1495 aaKnown RBP12.21□□□□□ -0.46
PRKCH-220ENST00000556164 SHROOM4Q9ULL8 1493 aa12.19□□□□□ -0.46
PRKCH-220ENST00000556164 SCRIBQ14160 1630 aa12.17□□□□□ -0.46
PRKCH-220ENST00000556164 CC2D2AQ9P2K1 1620 aa12.17□□□□□ -0.46
PRKCH-220ENST00000556164 DCAF1Q9Y4B6 1507 aa12.16□□□□□ -0.46
PRKCH-220ENST00000556164 CECR2Q9BXF3 1484 aa12.14□□□□□ -0.47
PRKCH-220ENST00000556164 EIF4G1Q04637 1599 aaKnown RBP12.1□□□□□ -0.47
PRKCH-220ENST00000556164 PHF23Q9BUL5 403 aaPredicted RBP11.98□□□□□ -0.49
PRKCH-220ENST00000556164 DNAJC5Q9H3Z4 198 aa11.78□□□□□ -0.52
PRKCH-220ENST00000556164 CUX2O14529 1486 aa11.66□□□□□ -0.54
PRKCH-220ENST00000556164 ERCC6Q03468 1493 aa11.65□□□□□ -0.54
PRKCH-220ENST00000556164 NCAPD3P42695 1498 aa11.63□□□□□ -0.55
PRKCH-220ENST00000556164 ATAD2BQ9ULI0 1458 aa11.59□□□□□ -0.55
PRKCH-220ENST00000556164 SMARCA4P51532 1647 aa11.57□□□□□ -0.56
PRKCH-220ENST00000556164 SMARCA2P51531 1590 aa11.57□□□□□ -0.56
PRKCH-220ENST00000556164 HMGXB3Q12766 1538 aa11.56□□□□□ -0.56
PRKCH-220ENST00000556164 NESP48681 1621 aa11.53□□□□□ -0.56
PRKCH-220ENST00000556164 BAZ1BQ9UIG0 1483 aaKnown RBP11.49□□□□□ -0.57
PRKCH-220ENST00000556164 BAZ1AQ9NRL2 1556 aaPredicted RBP11.48□□□□□ -0.57
PRKCH-220ENST00000556164 THOC2Q8NI27 1593 aaKnown RBP11.46□□□□□ -0.57
PRKCH-220ENST00000556164 PLPPR3Q6T4P5 718 aa11.45□□□□□ -0.58
PRKCH-220ENST00000556164 PEG3Q9GZU2 1588 aa11.44□□□□□ -0.58
PRKCH-220ENST00000556164 KIF21AQ7Z4S6 1674 aa11.43□□□□□ -0.58
PRKCH-220ENST00000556164 LAMC3Q9Y6N6 1575 aa11.43□□□□□ -0.58
PRKCH-220ENST00000556164 MROH2BQ7Z745 1585 aa11.37□□□□□ -0.59
PRKCH-220ENST00000556164 PDS5BQ9NTI5 1447 aa11.35□□□□□ -0.59
PRKCH-220ENST00000556164 EHMT2Q96KQ7 1210 aa11.3□□□□□ -0.6
PRKCH-220ENST00000556164 WIZO95785 1651 aa11.27□□□□□ -0.6
PRKCH-220ENST00000556164 MRC2Q9UBG0 1479 aa11.27□□□□□ -0.6
PRKCH-220ENST00000556164 CADPSQ9ULU8 1353 aa11.27□□□□□ -0.61
PRKCH-220ENST00000556164 TRIM41Q8WV44 630 aa11.26□□□□□ -0.61
PRKCH-220ENST00000556164 WDR62O43379 1518 aa11.25□□□□□ -0.61
PRKCH-220ENST00000556164 CEP164Q9UPV0 1460 aa11.2□□□□□ -0.62
PRKCH-220ENST00000556164 FANCD2Q9BXW9 1451 aa11.17□□□□□ -0.62
PRKCH-220ENST00000556164 SENP3Q9H4L4 574 aaPredicted RBP11.13□□□□□ -0.63
PRKCH-220ENST00000556164 CFTRP13569 1480 aa11.12□□□□□ -0.63
PRKCH-220ENST00000556164 TOP2AP11388 1531 aaKnown RBP11.09□□□□□ -0.63
PRKCH-220ENST00000556164 PRDM2Q13029 1718 aa11.09□□□□□ -0.63
PRKCH-220ENST00000556164 URB2Q14146 1524 aaKnown RBP11.09□□□□□ -0.63
PRKCH-220ENST00000556164 OSCARQ8IYS5 282 aa11.08□□□□□ -0.64
PRKCH-220ENST00000556164 RSF1Q96T23 1441 aaPredicted RBP11.07□□□□□ -0.64
PRKCH-220ENST00000556164 SLC24A1O60721 1099 aa11.06□□□□□ -0.64
PRKCH-220ENST00000556164 RIMBP3CA6NJZ7 1639 aa11.01□□□□□ -0.65
PRKCH-220ENST00000556164 RIMBP3BA6NNM3 1639 aa11.01□□□□□ -0.65
PRKCH-220ENST00000556164 RIMBP3Q9UFD9 1639 aa11.01□□□□□ -0.65
PRKCH-220ENST00000556164 IFT140Q96RY7 1462 aa10.97□□□□□ -0.65
PRKCH-220ENST00000556164 ZNF608Q9ULD9 1512 aaPredicted RBP10.97□□□□□ -0.65
PRKCH-220ENST00000556164 CCDC88BA6NC98 1476 aa10.95□□□□□ -0.66
PRKCH-220ENST00000556164 KCNA4P22459 653 aa10.95□□□□□ -0.66
PRKCH-220ENST00000556164 TOPBP1Q92547 1522 aa10.94□□□□□ -0.66
PRKCH-220ENST00000556164 EIF4G3O43432 1585 aaKnown RBP10.94□□□□□ -0.66
PRKCH-220ENST00000556164 ARHGEF11O15085 1522 aa10.94□□□□□ -0.66
PRKCH-220ENST00000556164 CHD1O14646 1710 aa10.92□□□□□ -0.66
PRKCH-220ENST00000556164 DNMBPQ6XZF7 1577 aa10.9□□□□□ -0.66
PRKCH-220ENST00000556164 ABCC8Q09428 1581 aa10.9□□□□□ -0.67
PRKCH-220ENST00000556164 TARBP1Q13395 1621 aaKnown RBP10.87□□□□□ -0.67
PRKCH-220ENST00000556164 AQRO60306 1485 aaKnown RBP eCLIP10.85□□□□□ -0.67
PRKCH-220ENST00000556164 CYB5RLQ6IPT4 315 aa10.84□□□□□ -0.67
PRKCH-220ENST00000556164 POLA1P09884 1462 aaPredicted RBP10.82□□□□□ -0.68
PRKCH-220ENST00000556164 FBLN2P98095 1184 aa10.82□□□□□ -0.68
PRKCH-220ENST00000556164 CSRNP3Q8WYN3 585 aa10.82□□□□□ -0.68
PRKCH-220ENST00000556164 ARAP1Q96P48 1450 aa10.81□□□□□ -0.68
PRKCH-220ENST00000556164 TRHP20396 242 aaPredicted RBP10.79□□□□□ -0.68
PRKCH-220ENST00000556164 RAD54L2Q9Y4B4 1467 aa10.79□□□□□ -0.68
PRKCH-220ENST00000556164 TDRD9Q8NDG6 1382 aaKnown RBP10.76□□□□□ -0.69
PRKCH-220ENST00000556164 SOGA1O94964 1423 aa10.75□□□□□ -0.69
PRKCH-220ENST00000556164 SNAPC4Q5SXM2 1469 aa10.75□□□□□ -0.69
PRKCH-220ENST00000556164 WDR97A6NE52 1622 aa10.75□□□□□ -0.69
PRKCH-220ENST00000556164 FGD5Q6ZNL6 1462 aa10.74□□□□□ -0.69
PRKCH-220ENST00000556164 CLASP1Q7Z460 1538 aa10.73□□□□□ -0.69
PRKCH-220ENST00000556164 SYNJ1O43426 1573 aa10.73□□□□□ -0.69
PRKCH-220ENST00000556164 CUX1P39880 1505 aa10.71□□□□□ -0.69
PRKCH-220ENST00000556164 PBRM1Q86U86 1689 aa10.7□□□□□ -0.7
PRKCH-220ENST00000556164 MAGI1Q96QZ7 1491 aaPredicted RBP10.7□□□□□ -0.7
PRKCH-220ENST00000556164 CHMP7Q8WUX9 453 aaPredicted RBP10.7□□□□□ -0.7
PRKCH-220ENST00000556164 GRIN2BQ13224 1484 aa10.68□□□□□ -0.7
PRKCH-220ENST00000556164 SYNJ2O15056 1496 aa10.68□□□□□ -0.7
PRKCH-220ENST00000556164 GAPVD1Q14C86 1478 aa10.63□□□□□ -0.71
PRKCH-220ENST00000556164 ABCA5Q8WWZ7 1642 aa10.62□□□□□ -0.71
PRKCH-220ENST00000556164 SLC4A1APQ9BWU0 796 aaKnown RBP10.62□□□□□ -0.71
PRKCH-220ENST00000556164 ABCA10Q8WWZ4 1543 aa10.59□□□□□ -0.71
PRKCH-220ENST00000556164 ERCC6L2Q5T890 1561 aa10.56□□□□□ -0.72
PRKCH-220ENST00000556164 ADRA2BP18089 450 aa10.56□□□□□ -0.72
PRKCH-220ENST00000556164 AMER1Q5JTC6 1135 aaPredicted RBP10.56□□□□□ -0.72
PRKCH-220ENST00000556164 ADAMTS12P58397 1594 aa10.56□□□□□ -0.72
PRKCH-220ENST00000556164 GRIN2AQ12879 1464 aa10.55□□□□□ -0.72
PRKCH-220ENST00000556164 CEP170Q5SW79 1584 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms