RNA–Protein interactions for RNA: ENST00000556076.5

CHGA-204, Transcript of chromogranin A, humanhuman

TSL 5

Gene CHGA, Length 896 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-204ENST00000556076 NISCHQ9Y2I1 1504 aa40.12■■■■■ 4.01
CHGA-204ENST00000556076 CCDC180Q9P1Z9 1646 aa35.81■■■■□ 3.32
CHGA-204ENST00000556076 ABCC9O60706 1549 aa35.64■■■■□ 3.3
CHGA-204ENST00000556076 RB1CC1Q8TDY2 1594 aa33.93■■■■□ 3.02
CHGA-204ENST00000556076 DCAF8L2P0C7V8 631 aa33.83■■■■□ 3.01
CHGA-204ENST00000556076 NACADO15069 1562 aa33.75■■■□□ 2.99
CHGA-204ENST00000556076 UNC13AQ9UPW8 1703 aa33.32■■■□□ 2.92
CHGA-204ENST00000556076 ZCCHC6Q5VYS8 1495 aaKnown RBP33.31■■■□□ 2.92
CHGA-204ENST00000556076 MYO15BQ96JP2 1530 aa33.31■■■□□ 2.92
CHGA-204ENST00000556076 PABPN1Q86U42 306 aaKnown RBP eCLIP33.26■■■□□ 2.91
CHGA-204ENST00000556076 DNAJC5BQ9UF47 199 aa33.18■■■□□ 2.9
CHGA-204ENST00000556076 DCAF1Q9Y4B6 1507 aa33.05■■■□□ 2.88
CHGA-204ENST00000556076 BICRAQ9NZM4 1560 aa33.04■■■□□ 2.88
CHGA-204ENST00000556076 SCRIBQ14160 1630 aa32.8■■■□□ 2.84
CHGA-204ENST00000556076 SHROOM4Q9ULL8 1493 aa32.38■■■□□ 2.77
CHGA-204ENST00000556076 CC2D2AQ9P2K1 1620 aa32.16■■■□□ 2.74
CHGA-204ENST00000556076 EIF4G1Q04637 1599 aaKnown RBP32.15■■■□□ 2.74
CHGA-204ENST00000556076 CECR2Q9BXF3 1484 aa31.99■■■□□ 2.71
CHGA-204ENST00000556076 SMARCA4P51532 1647 aa31.25■■■□□ 2.59
CHGA-204ENST00000556076 ATAD2BQ9ULI0 1458 aa31.18■■■□□ 2.58
CHGA-204ENST00000556076 NCAPD3P42695 1498 aa31.16■■■□□ 2.58
CHGA-204ENST00000556076 BAZ1AQ9NRL2 1556 aaPredicted RBP31.08■■■□□ 2.57
CHGA-204ENST00000556076 SMARCA2P51531 1590 aa31.05■■■□□ 2.56
CHGA-204ENST00000556076 MROH2BQ7Z745 1585 aa31■■■□□ 2.55
CHGA-204ENST00000556076 HMGXB3Q12766 1538 aa30.97■■■□□ 2.55
CHGA-204ENST00000556076 BAZ1BQ9UIG0 1483 aaKnown RBP30.89■■■□□ 2.54
CHGA-204ENST00000556076 PEG3Q9GZU2 1588 aa30.87■■■□□ 2.53
CHGA-204ENST00000556076 NESP48681 1621 aa30.75■■■□□ 2.51
CHGA-204ENST00000556076 WIZO95785 1651 aa30.67■■■□□ 2.5
CHGA-204ENST00000556076 ERCC6Q03468 1493 aa30.66■■■□□ 2.5
CHGA-204ENST00000556076 RSF1Q96T23 1441 aaPredicted RBP30.44■■■□□ 2.46
CHGA-204ENST00000556076 LAMC3Q9Y6N6 1575 aa30.41■■■□□ 2.46
CHGA-204ENST00000556076 CUX2O14529 1486 aa30.41■■■□□ 2.46
CHGA-204ENST00000556076 KIF21AQ7Z4S6 1674 aa30.34■■■□□ 2.45
CHGA-204ENST00000556076 THOC2Q8NI27 1593 aaKnown RBP30.29■■■□□ 2.44
CHGA-204ENST00000556076 CADPSQ9ULU8 1353 aa30.25■■■□□ 2.43
CHGA-204ENST00000556076 TOP2AP11388 1531 aaKnown RBP30.21■■■□□ 2.43
CHGA-204ENST00000556076 PDS5BQ9NTI5 1447 aa30.21■■■□□ 2.43
CHGA-204ENST00000556076 DNAJC5Q9H3Z4 198 aa30.08■■■□□ 2.41
CHGA-204ENST00000556076 CFTRP13569 1480 aa29.99■■■□□ 2.39
CHGA-204ENST00000556076 MRC2Q9UBG0 1479 aa29.99■■■□□ 2.39
CHGA-204ENST00000556076 FANCD2Q9BXW9 1451 aa29.96■■■□□ 2.39
CHGA-204ENST00000556076 CEP164Q9UPV0 1460 aa29.93■■■□□ 2.38
CHGA-204ENST00000556076 CCDC88BA6NC98 1476 aa29.91■■■□□ 2.38
CHGA-204ENST00000556076 WDR62O43379 1518 aa29.9■■■□□ 2.38
CHGA-204ENST00000556076 PRDM2Q13029 1718 aa29.75■■■□□ 2.35
CHGA-204ENST00000556076 URB2Q14146 1524 aaKnown RBP29.74■■■□□ 2.35
CHGA-204ENST00000556076 TOPBP1Q92547 1522 aa29.44■■■□□ 2.3
CHGA-204ENST00000556076 SUPT5HO00267 1087 aaKnown RBP29.43■■■□□ 2.3
CHGA-204ENST00000556076 ZNF608Q9ULD9 1512 aaPredicted RBP29.35■■■□□ 2.29
CHGA-204ENST00000556076 DNMBPQ6XZF7 1577 aa29.34■■■□□ 2.29
CHGA-204ENST00000556076 IFT140Q96RY7 1462 aa29.29■■■□□ 2.28
CHGA-204ENST00000556076 ABCC8Q09428 1581 aa29.25■■■□□ 2.27
CHGA-204ENST00000556076 TARBP1Q13395 1621 aaKnown RBP29.17■■■□□ 2.26
CHGA-204ENST00000556076 EIF4G3O43432 1585 aaKnown RBP29.17■■■□□ 2.26
CHGA-204ENST00000556076 POLA1P09884 1462 aaPredicted RBP29.16■■■□□ 2.26
CHGA-204ENST00000556076 RAD54L2Q9Y4B4 1467 aa29.11■■■□□ 2.25
CHGA-204ENST00000556076 OSCARQ8IYS5 282 aa29.11■■■□□ 2.25
CHGA-204ENST00000556076 AQRO60306 1485 aaKnown RBP eCLIP29.1■■■□□ 2.25
CHGA-204ENST00000556076 CUX1P39880 1505 aa29.1■■■□□ 2.25
CHGA-204ENST00000556076 FGD5Q6ZNL6 1462 aa29.04■■■□□ 2.24
CHGA-204ENST00000556076 TRIM41Q8WV44 630 aa29.03■■■□□ 2.24
CHGA-204ENST00000556076 SOGA1O94964 1423 aa29.02■■■□□ 2.24
CHGA-204ENST00000556076 TDRD9Q8NDG6 1382 aaKnown RBP28.98■■■□□ 2.23
CHGA-204ENST00000556076 CHD1O14646 1710 aa28.92■■■□□ 2.22
CHGA-204ENST00000556076 FBLN2P98095 1184 aa28.84■■■□□ 2.21
CHGA-204ENST00000556076 WDR97A6NE52 1622 aa28.82■■■□□ 2.2
CHGA-204ENST00000556076 RIMBP3CA6NJZ7 1639 aa28.8■■■□□ 2.2
CHGA-204ENST00000556076 RIMBP3BA6NNM3 1639 aa28.8■■■□□ 2.2
CHGA-204ENST00000556076 RIMBP3Q9UFD9 1639 aa28.8■■■□□ 2.2
CHGA-204ENST00000556076 SNAPC4Q5SXM2 1469 aa28.79■■■□□ 2.2
CHGA-204ENST00000556076 SYNJ1O43426 1573 aa28.72■■■□□ 2.19
CHGA-204ENST00000556076 ARHGEF11O15085 1522 aa28.71■■■□□ 2.19
CHGA-204ENST00000556076 GRIN2BQ13224 1484 aa28.69■■■□□ 2.18
CHGA-204ENST00000556076 PBRM1Q86U86 1689 aa28.69■■■□□ 2.18
CHGA-204ENST00000556076 BIVM-ERCC5R4GMW8 1640 aa28.67■■■□□ 2.18
CHGA-204ENST00000556076 ABCA10Q8WWZ4 1543 aa28.67■■■□□ 2.18
CHGA-204ENST00000556076 WRNQ14191 1432 aaPredicted RBP eCLIP28.67■■■□□ 2.18
CHGA-204ENST00000556076 GAPVD1Q14C86 1478 aa28.66■■■□□ 2.18
CHGA-204ENST00000556076 TOP2BQ02880 1626 aa28.66■■■□□ 2.18
CHGA-204ENST00000556076 ABCA5Q8WWZ7 1642 aa28.64■■■□□ 2.18
CHGA-204ENST00000556076 MAGI1Q96QZ7 1491 aaPredicted RBP28.63■■■□□ 2.17
CHGA-204ENST00000556076 CHMP7Q8WUX9 453 aaPredicted RBP28.61■■■□□ 2.17
CHGA-204ENST00000556076 SYNJ2O15056 1496 aa28.56■■■□□ 2.16
CHGA-204ENST00000556076 CLASP1Q7Z460 1538 aa28.53■■■□□ 2.16
CHGA-204ENST00000556076 CYB5RLQ6IPT4 315 aa28.5■■■□□ 2.15
CHGA-204ENST00000556076 ARAP1Q96P48 1450 aa28.48■■■□□ 2.15
CHGA-204ENST00000556076 ADAMTS12P58397 1594 aa28.41■■■□□ 2.14
CHGA-204ENST00000556076 GRIN2AQ12879 1464 aa28.35■■■□□ 2.13
CHGA-204ENST00000556076 CEP170Q5SW79 1584 aa28.3■■■□□ 2.12
CHGA-204ENST00000556076 ERICH3Q5RHP9 1530 aa28.29■■■□□ 2.12
CHGA-204ENST00000556076 FHAD1B1AJZ9 1412 aa28.27■■■□□ 2.12
CHGA-204ENST00000556076 ERCC6L2Q5T890 1561 aa28.23■■■□□ 2.11
CHGA-204ENST00000556076 NUP160Q12769 1436 aa28.22■■■□□ 2.11
CHGA-204ENST00000556076 SHROOM2Q13796 1616 aa28.08■■■□□ 2.09
CHGA-204ENST00000556076 TRHP20396 242 aaPredicted RBP28.07■■■□□ 2.08
CHGA-204ENST00000556076 IGF1RP08069 1367 aa28.07■■■□□ 2.08
CHGA-204ENST00000556076 KIF27Q86VH2 1401 aa28.06■■■□□ 2.08
CHGA-204ENST00000556076 RUSC2Q8N2Y8 1516 aa28.01■■■□□ 2.07
CHGA-204ENST00000556076 PRG4Q92954 1404 aaPredicted RBP27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms