RNA–Protein interactions for RNA: ENST00000556013.2

PTCSC3-201, Transcript of papillary thyroid carcinoma susceptibility candidate 3, humanhuman

TSL 1 (best) BASIC

Gene PTCSC3, Length 571 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCSC3-201ENST00000556013 NISCHQ9Y2I1 1504 aa19.34■□□□□ 0.69
PTCSC3-201ENST00000556013 CCDC180Q9P1Z9 1646 aa17.28■□□□□ 0.36
PTCSC3-201ENST00000556013 ABCC9O60706 1549 aa17.21■□□□□ 0.34
PTCSC3-201ENST00000556013 RB1CC1Q8TDY2 1594 aa16.46■□□□□ 0.23
PTCSC3-201ENST00000556013 NACADO15069 1562 aa16.4■□□□□ 0.22
PTCSC3-201ENST00000556013 DCAF8L2P0C7V8 631 aa16.31■□□□□ 0.2
PTCSC3-201ENST00000556013 MYO15BQ96JP2 1530 aa16.26■□□□□ 0.19
PTCSC3-201ENST00000556013 DNAJC5BQ9UF47 199 aa16.17■□□□□ 0.18
PTCSC3-201ENST00000556013 PABPN1Q86U42 306 aaKnown RBP eCLIP16.07■□□□□ 0.16
PTCSC3-201ENST00000556013 DCAF1Q9Y4B6 1507 aa16.04■□□□□ 0.16
PTCSC3-201ENST00000556013 ZCCHC6Q5VYS8 1495 aaKnown RBP16.01■□□□□ 0.15
PTCSC3-201ENST00000556013 UNC13AQ9UPW8 1703 aa15.94■□□□□ 0.14
PTCSC3-201ENST00000556013 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
PTCSC3-201ENST00000556013 SHROOM4Q9ULL8 1493 aa15.85■□□□□ 0.13
PTCSC3-201ENST00000556013 SCRIBQ14160 1630 aa15.65■□□□□ 0.1
PTCSC3-201ENST00000556013 EIF4G1Q04637 1599 aaKnown RBP15.55■□□□□ 0.08
PTCSC3-201ENST00000556013 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
PTCSC3-201ENST00000556013 CECR2Q9BXF3 1484 aa15.54■□□□□ 0.08
PTCSC3-201ENST00000556013 NCAPD3P42695 1498 aa15.19■□□□□ 0.02
PTCSC3-201ENST00000556013 ATAD2BQ9ULI0 1458 aa15.08■□□□□ 0.01
PTCSC3-201ENST00000556013 SMARCA2P51531 1590 aa15.04■□□□□ -0
PTCSC3-201ENST00000556013 SMARCA4P51532 1647 aa15.01□□□□□ -0.01
PTCSC3-201ENST00000556013 BAZ1AQ9NRL2 1556 aaPredicted RBP15□□□□□ -0.01
PTCSC3-201ENST00000556013 HMGXB3Q12766 1538 aa15□□□□□ -0.01
PTCSC3-201ENST00000556013 PEG3Q9GZU2 1588 aa14.94□□□□□ -0.02
PTCSC3-201ENST00000556013 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
PTCSC3-201ENST00000556013 CUX2O14529 1486 aa14.9□□□□□ -0.02
PTCSC3-201ENST00000556013 DNAJC5Q9H3Z4 198 aa14.9□□□□□ -0.02
PTCSC3-201ENST00000556013 ERCC6Q03468 1493 aa14.88□□□□□ -0.03
PTCSC3-201ENST00000556013 MROH2BQ7Z745 1585 aa14.85□□□□□ -0.03
PTCSC3-201ENST00000556013 NESP48681 1621 aa14.77□□□□□ -0.04
PTCSC3-201ENST00000556013 LAMC3Q9Y6N6 1575 aa14.77□□□□□ -0.05
PTCSC3-201ENST00000556013 PDS5BQ9NTI5 1447 aa14.74□□□□□ -0.05
PTCSC3-201ENST00000556013 CADPSQ9ULU8 1353 aa14.73□□□□□ -0.05
PTCSC3-201ENST00000556013 RSF1Q96T23 1441 aaPredicted RBP14.62□□□□□ -0.07
PTCSC3-201ENST00000556013 WIZO95785 1651 aa14.61□□□□□ -0.07
PTCSC3-201ENST00000556013 THOC2Q8NI27 1593 aaKnown RBP14.6□□□□□ -0.07
PTCSC3-201ENST00000556013 CFTRP13569 1480 aa14.54□□□□□ -0.08
PTCSC3-201ENST00000556013 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
PTCSC3-201ENST00000556013 KIF21AQ7Z4S6 1674 aa14.52□□□□□ -0.08
PTCSC3-201ENST00000556013 TOP2AP11388 1531 aaKnown RBP14.5□□□□□ -0.09
PTCSC3-201ENST00000556013 WDR62O43379 1518 aa14.48□□□□□ -0.09
PTCSC3-201ENST00000556013 CEP164Q9UPV0 1460 aa14.48□□□□□ -0.09
PTCSC3-201ENST00000556013 FANCD2Q9BXW9 1451 aa14.47□□□□□ -0.09
PTCSC3-201ENST00000556013 CCDC88BA6NC98 1476 aa14.37□□□□□ -0.11
PTCSC3-201ENST00000556013 URB2Q14146 1524 aaKnown RBP14.31□□□□□ -0.12
PTCSC3-201ENST00000556013 OSCARQ8IYS5 282 aa14.31□□□□□ -0.12
PTCSC3-201ENST00000556013 ABCC8Q09428 1581 aa14.29□□□□□ -0.12
PTCSC3-201ENST00000556013 IFT140Q96RY7 1462 aa14.24□□□□□ -0.13
PTCSC3-201ENST00000556013 PRDM2Q13029 1718 aa14.24□□□□□ -0.13
PTCSC3-201ENST00000556013 TOPBP1Q92547 1522 aa14.2□□□□□ -0.14
PTCSC3-201ENST00000556013 TRIM41Q8WV44 630 aa14.14□□□□□ -0.15
PTCSC3-201ENST00000556013 DNMBPQ6XZF7 1577 aa14.13□□□□□ -0.15
PTCSC3-201ENST00000556013 ZNF608Q9ULD9 1512 aaPredicted RBP14.12□□□□□ -0.15
PTCSC3-201ENST00000556013 POLA1P09884 1462 aaPredicted RBP14.06□□□□□ -0.16
PTCSC3-201ENST00000556013 SOGA1O94964 1423 aa14.05□□□□□ -0.16
PTCSC3-201ENST00000556013 AQRO60306 1485 aaKnown RBP eCLIP14.04□□□□□ -0.16
PTCSC3-201ENST00000556013 TARBP1Q13395 1621 aaKnown RBP14.04□□□□□ -0.16
PTCSC3-201ENST00000556013 EIF4G3O43432 1585 aaKnown RBP14□□□□□ -0.17
PTCSC3-201ENST00000556013 SUPT5HO00267 1087 aaKnown RBP13.98□□□□□ -0.17
PTCSC3-201ENST00000556013 RAD54L2Q9Y4B4 1467 aa13.98□□□□□ -0.17
PTCSC3-201ENST00000556013 WDR97A6NE52 1622 aa13.97□□□□□ -0.17
PTCSC3-201ENST00000556013 TDRD9Q8NDG6 1382 aaKnown RBP13.97□□□□□ -0.17
PTCSC3-201ENST00000556013 FBLN2P98095 1184 aa13.96□□□□□ -0.17
PTCSC3-201ENST00000556013 FGD5Q6ZNL6 1462 aa13.95□□□□□ -0.18
PTCSC3-201ENST00000556013 ARHGEF11O15085 1522 aa13.94□□□□□ -0.18
PTCSC3-201ENST00000556013 CUX1P39880 1505 aa13.94□□□□□ -0.18
PTCSC3-201ENST00000556013 CHMP7Q8WUX9 453 aaPredicted RBP13.93□□□□□ -0.18
PTCSC3-201ENST00000556013 RIMBP3CA6NJZ7 1639 aa13.93□□□□□ -0.18
PTCSC3-201ENST00000556013 RIMBP3BA6NNM3 1639 aa13.93□□□□□ -0.18
PTCSC3-201ENST00000556013 RIMBP3Q9UFD9 1639 aa13.93□□□□□ -0.18
PTCSC3-201ENST00000556013 CYB5RLQ6IPT4 315 aa13.91□□□□□ -0.18
PTCSC3-201ENST00000556013 GRIN2BQ13224 1484 aa13.9□□□□□ -0.18
PTCSC3-201ENST00000556013 MAGI1Q96QZ7 1491 aaPredicted RBP13.9□□□□□ -0.18
PTCSC3-201ENST00000556013 SNAPC4Q5SXM2 1469 aa13.87□□□□□ -0.19
PTCSC3-201ENST00000556013 ABCA10Q8WWZ4 1543 aa13.86□□□□□ -0.19
PTCSC3-201ENST00000556013 GAPVD1Q14C86 1478 aa13.86□□□□□ -0.19
PTCSC3-201ENST00000556013 CHD1O14646 1710 aa13.85□□□□□ -0.19
PTCSC3-201ENST00000556013 SYNJ2O15056 1496 aa13.85□□□□□ -0.19
PTCSC3-201ENST00000556013 WRNQ14191 1432 aaPredicted RBP eCLIP13.83□□□□□ -0.2
PTCSC3-201ENST00000556013 SYNJ1O43426 1573 aa13.8□□□□□ -0.2
PTCSC3-201ENST00000556013 ARAP1Q96P48 1450 aa13.8□□□□□ -0.2
PTCSC3-201ENST00000556013 CLASP1Q7Z460 1538 aa13.79□□□□□ -0.2
PTCSC3-201ENST00000556013 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
PTCSC3-201ENST00000556013 ABCA5Q8WWZ7 1642 aa13.75□□□□□ -0.21
PTCSC3-201ENST00000556013 BIVM-ERCC5R4GMW8 1640 aa13.72□□□□□ -0.21
PTCSC3-201ENST00000556013 TRHP20396 242 aaPredicted RBP13.71□□□□□ -0.21
PTCSC3-201ENST00000556013 FHAD1B1AJZ9 1412 aa13.71□□□□□ -0.22
PTCSC3-201ENST00000556013 PBRM1Q86U86 1689 aa13.7□□□□□ -0.22
PTCSC3-201ENST00000556013 GRIN2AQ12879 1464 aa13.69□□□□□ -0.22
PTCSC3-201ENST00000556013 ERICH3Q5RHP9 1530 aa13.69□□□□□ -0.22
PTCSC3-201ENST00000556013 NUP160Q12769 1436 aa13.68□□□□□ -0.22
PTCSC3-201ENST00000556013 ADAMTS12P58397 1594 aa13.62□□□□□ -0.23
PTCSC3-201ENST00000556013 JPH4Q96JJ6 628 aa13.62□□□□□ -0.23
PTCSC3-201ENST00000556013 CEP170Q5SW79 1584 aa13.58□□□□□ -0.24
PTCSC3-201ENST00000556013 IGF1RP08069 1367 aa13.58□□□□□ -0.24
PTCSC3-201ENST00000556013 KIF27Q86VH2 1401 aa13.56□□□□□ -0.24
PTCSC3-201ENST00000556013 SHROOM2Q13796 1616 aa13.55□□□□□ -0.24
PTCSC3-201ENST00000556013 PRG4Q92954 1404 aaPredicted RBP13.53□□□□□ -0.24
PTCSC3-201ENST00000556013 ERCC6L2Q5T890 1561 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms