RNA–Protein interactions for RNA: ENST00000555985.5

LINC00648-202, long intergenic non-protein coding RNA 648, humanhuman

TSL 2 BASIC

Gene LINC00648, Length 2,885 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00648-202ENST00000555985 NISCHQ9Y2I1 1504 aa9.8□□□□□ -0.84
LINC00648-202ENST00000555985 AEBP2Q6ZN18 517 aaPredicted RBP9.28□□□□□ -0.92
LINC00648-202ENST00000555985 CHIC1Q5VXU3 224 aa9.09□□□□□ -0.95
LINC00648-202ENST00000555985 CCDC180Q9P1Z9 1646 aa8.79□□□□□ -1
LINC00648-202ENST00000555985 ABCC9O60706 1549 aa8.42□□□□□ -1.06
LINC00648-202ENST00000555985 MYO15BQ96JP2 1530 aa8.23□□□□□ -1.09
LINC00648-202ENST00000555985 NACADO15069 1562 aa8.2□□□□□ -1.1
LINC00648-202ENST00000555985 RB1CC1Q8TDY2 1594 aa8.19□□□□□ -1.1
LINC00648-202ENST00000555985 ZCCHC6Q5VYS8 1495 aaKnown RBP8.18□□□□□ -1.1
LINC00648-202ENST00000555985 DCAF1Q9Y4B6 1507 aa8.18□□□□□ -1.1
LINC00648-202ENST00000555985 UNC13AQ9UPW8 1703 aa8.1□□□□□ -1.11
LINC00648-202ENST00000555985 BICRAQ9NZM4 1560 aa8.02□□□□□ -1.13
LINC00648-202ENST00000555985 POTEDQ86YR6 584 aa7.99□□□□□ -1.13
LINC00648-202ENST00000555985 PHF23Q9BUL5 403 aaPredicted RBP7.97□□□□□ -1.13
LINC00648-202ENST00000555985 SHROOM4Q9ULL8 1493 aa7.94□□□□□ -1.14
LINC00648-202ENST00000555985 SENP3Q9H4L4 574 aaPredicted RBP7.91□□□□□ -1.14
LINC00648-202ENST00000555985 SCRIBQ14160 1630 aa7.9□□□□□ -1.15
LINC00648-202ENST00000555985 DCAF8L2P0C7V8 631 aa7.88□□□□□ -1.15
LINC00648-202ENST00000555985 PABPN1Q86U42 306 aaKnown RBP eCLIP7.81□□□□□ -1.16
LINC00648-202ENST00000555985 DNAJC5BQ9UF47 199 aa7.77□□□□□ -1.17
LINC00648-202ENST00000555985 EIF4G1Q04637 1599 aaKnown RBP7.74□□□□□ -1.17
LINC00648-202ENST00000555985 CC2D2AQ9P2K1 1620 aa7.71□□□□□ -1.18
LINC00648-202ENST00000555985 SMARCA4P51532 1647 aa7.62□□□□□ -1.19
LINC00648-202ENST00000555985 PEG3Q9GZU2 1588 aa7.61□□□□□ -1.19
LINC00648-202ENST00000555985 CECR2Q9BXF3 1484 aa7.6□□□□□ -1.19
LINC00648-202ENST00000555985 BAZ1AQ9NRL2 1556 aaPredicted RBP7.58□□□□□ -1.2
LINC00648-202ENST00000555985 NCAPD3P42695 1498 aa7.56□□□□□ -1.2
LINC00648-202ENST00000555985 HMGXB3Q12766 1538 aa7.56□□□□□ -1.2
LINC00648-202ENST00000555985 ATAD2BQ9ULI0 1458 aa7.54□□□□□ -1.2
LINC00648-202ENST00000555985 SMARCA2P51531 1590 aa7.54□□□□□ -1.2
LINC00648-202ENST00000555985 MROH2BQ7Z745 1585 aa7.54□□□□□ -1.2
LINC00648-202ENST00000555985 WIZO95785 1651 aa7.46□□□□□ -1.22
LINC00648-202ENST00000555985 BAZ1BQ9UIG0 1483 aaKnown RBP7.43□□□□□ -1.22
LINC00648-202ENST00000555985 RSF1Q96T23 1441 aaPredicted RBP7.43□□□□□ -1.22
LINC00648-202ENST00000555985 FOXD1Q16676 465 aa7.4□□□□□ -1.23
LINC00648-202ENST00000555985 TOP2AP11388 1531 aaKnown RBP7.39□□□□□ -1.23
LINC00648-202ENST00000555985 LAMC3Q9Y6N6 1575 aa7.37□□□□□ -1.23
LINC00648-202ENST00000555985 PLPPR3Q6T4P5 718 aa7.37□□□□□ -1.23
LINC00648-202ENST00000555985 NESP48681 1621 aa7.33□□□□□ -1.24
LINC00648-202ENST00000555985 PRDM2Q13029 1718 aa7.33□□□□□ -1.24
LINC00648-202ENST00000555985 THOC2Q8NI27 1593 aaKnown RBP7.32□□□□□ -1.24
LINC00648-202ENST00000555985 KIF21AQ7Z4S6 1674 aa7.31□□□□□ -1.24
LINC00648-202ENST00000555985 CFTRP13569 1480 aa7.29□□□□□ -1.24
LINC00648-202ENST00000555985 CADPSQ9ULU8 1353 aa7.28□□□□□ -1.24
LINC00648-202ENST00000555985 CCDC88BA6NC98 1476 aa7.27□□□□□ -1.25
LINC00648-202ENST00000555985 CUX2O14529 1486 aa7.27□□□□□ -1.25
LINC00648-202ENST00000555985 WDR62O43379 1518 aa7.24□□□□□ -1.25
LINC00648-202ENST00000555985 PDS5BQ9NTI5 1447 aa7.23□□□□□ -1.25
LINC00648-202ENST00000555985 ERCC6Q03468 1493 aa7.21□□□□□ -1.25
LINC00648-202ENST00000555985 MRC2Q9UBG0 1479 aa7.2□□□□□ -1.26
LINC00648-202ENST00000555985 FANCD2Q9BXW9 1451 aa7.2□□□□□ -1.26
LINC00648-202ENST00000555985 CEP164Q9UPV0 1460 aa7.18□□□□□ -1.26
LINC00648-202ENST00000555985 URB2Q14146 1524 aaKnown RBP7.17□□□□□ -1.26
LINC00648-202ENST00000555985 DNMBPQ6XZF7 1577 aa7.13□□□□□ -1.27
LINC00648-202ENST00000555985 TOPBP1Q92547 1522 aa7.11□□□□□ -1.27
LINC00648-202ENST00000555985 TARBP1Q13395 1621 aaKnown RBP7.11□□□□□ -1.27
LINC00648-202ENST00000555985 ABCC8Q09428 1581 aa7.1□□□□□ -1.27
LINC00648-202ENST00000555985 WDR97A6NE52 1622 aa7.09□□□□□ -1.27
LINC00648-202ENST00000555985 CUX1P39880 1505 aa7.08□□□□□ -1.28
LINC00648-202ENST00000555985 BIVM-ERCC5R4GMW8 1640 aa7.07□□□□□ -1.28
LINC00648-202ENST00000555985 IFT140Q96RY7 1462 aa7.06□□□□□ -1.28
LINC00648-202ENST00000555985 POLA1P09884 1462 aaPredicted RBP7.05□□□□□ -1.28
LINC00648-202ENST00000555985 EIF4G3O43432 1585 aaKnown RBP7.03□□□□□ -1.28
LINC00648-202ENST00000555985 TOP2BQ02880 1626 aa7.03□□□□□ -1.28
LINC00648-202ENST00000555985 ZNF608Q9ULD9 1512 aaPredicted RBP7.02□□□□□ -1.29
LINC00648-202ENST00000555985 SUPT5HO00267 1087 aaKnown RBP7.02□□□□□ -1.29
LINC00648-202ENST00000555985 SYNJ1O43426 1573 aa7.02□□□□□ -1.29
LINC00648-202ENST00000555985 FGD5Q6ZNL6 1462 aa7.01□□□□□ -1.29
LINC00648-202ENST00000555985 ABCA5Q8WWZ7 1642 aa7□□□□□ -1.29
LINC00648-202ENST00000555985 PPP6R1Q9UPN7 881 aa6.99□□□□□ -1.29
LINC00648-202ENST00000555985 ABCA10Q8WWZ4 1543 aa6.99□□□□□ -1.29
LINC00648-202ENST00000555985 RAD54L2Q9Y4B4 1467 aa6.98□□□□□ -1.29
LINC00648-202ENST00000555985 PBRM1Q86U86 1689 aa6.97□□□□□ -1.29
LINC00648-202ENST00000555985 DNAJC5Q9H3Z4 198 aa6.97□□□□□ -1.29
LINC00648-202ENST00000555985 ADRA2BP18089 450 aa6.96□□□□□ -1.29
LINC00648-202ENST00000555985 SOGA1O94964 1423 aa6.96□□□□□ -1.3
LINC00648-202ENST00000555985 WRNQ14191 1432 aaPredicted RBP eCLIP6.96□□□□□ -1.3
LINC00648-202ENST00000555985 CHD1O14646 1710 aa6.95□□□□□ -1.3
LINC00648-202ENST00000555985 AQRO60306 1485 aaKnown RBP eCLIP6.94□□□□□ -1.3
LINC00648-202ENST00000555985 MAGI1Q96QZ7 1491 aaPredicted RBP6.92□□□□□ -1.3
LINC00648-202ENST00000555985 GRIN2BQ13224 1484 aa6.91□□□□□ -1.3
LINC00648-202ENST00000555985 CLASP1Q7Z460 1538 aa6.91□□□□□ -1.3
LINC00648-202ENST00000555985 ADAMTS12P58397 1594 aa6.91□□□□□ -1.3
LINC00648-202ENST00000555985 ERICH3Q5RHP9 1530 aa6.91□□□□□ -1.3
LINC00648-202ENST00000555985 MSH5O43196 834 aa6.9□□□□□ -1.3
LINC00648-202ENST00000555985 GAPVD1Q14C86 1478 aa6.9□□□□□ -1.3
LINC00648-202ENST00000555985 SNAPC4Q5SXM2 1469 aa6.9□□□□□ -1.3
LINC00648-202ENST00000555985 TDRD9Q8NDG6 1382 aaKnown RBP6.89□□□□□ -1.31
LINC00648-202ENST00000555985 SYNJ2O15056 1496 aa6.88□□□□□ -1.31
LINC00648-202ENST00000555985 SHROOM2Q13796 1616 aa6.86□□□□□ -1.31
LINC00648-202ENST00000555985 PIAS4Q8N2W9 510 aaPredicted RBP6.86□□□□□ -1.31
LINC00648-202ENST00000555985 RIMBP3CA6NJZ7 1639 aa6.85□□□□□ -1.31
LINC00648-202ENST00000555985 RIMBP3BA6NNM3 1639 aa6.85□□□□□ -1.31
LINC00648-202ENST00000555985 RIMBP3Q9UFD9 1639 aa6.85□□□□□ -1.31
LINC00648-202ENST00000555985 CEP170Q5SW79 1584 aa6.85□□□□□ -1.31
LINC00648-202ENST00000555985 CUL7Q14999 1698 aa6.85□□□□□ -1.31
LINC00648-202ENST00000555985 NUP160Q12769 1436 aa6.84□□□□□ -1.31
LINC00648-202ENST00000555985 GRIN2AQ12879 1464 aa6.84□□□□□ -1.31
LINC00648-202ENST00000555985 OSCARQ8IYS5 282 aa6.83□□□□□ -1.32
LINC00648-202ENST00000555985 FHAD1B1AJZ9 1412 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 321 ms