RNA–Protein interactions for RNA: ENST00000555964.5

XRCC3-215, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 4

Gene XRCC3, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-215ENST00000555964 NISCHQ9Y2I1 1504 aa42.61■■■■■ 4.41
XRCC3-215ENST00000555964 CCDC180Q9P1Z9 1646 aa38.41■■■■□ 3.74
XRCC3-215ENST00000555964 ABCC9O60706 1549 aa38.35■■■■□ 3.73
XRCC3-215ENST00000555964 RB1CC1Q8TDY2 1594 aa36.59■■■■□ 3.45
XRCC3-215ENST00000555964 NACADO15069 1562 aa36.32■■■■□ 3.41
XRCC3-215ENST00000555964 DCAF8L2P0C7V8 631 aa35.93■■■■□ 3.34
XRCC3-215ENST00000555964 DNAJC5BQ9UF47 199 aa35.91■■■■□ 3.34
XRCC3-215ENST00000555964 MYO15BQ96JP2 1530 aa35.79■■■■□ 3.32
XRCC3-215ENST00000555964 UNC13AQ9UPW8 1703 aa35.72■■■■□ 3.31
XRCC3-215ENST00000555964 PABPN1Q86U42 306 aaKnown RBP eCLIP35.61■■■■□ 3.29
XRCC3-215ENST00000555964 BICRAQ9NZM4 1560 aa35.4■■■■□ 3.26
XRCC3-215ENST00000555964 ZCCHC6Q5VYS8 1495 aaKnown RBP35.31■■■■□ 3.24
XRCC3-215ENST00000555964 DCAF1Q9Y4B6 1507 aa35.27■■■■□ 3.24
XRCC3-215ENST00000555964 SHROOM4Q9ULL8 1493 aa35.12■■■■□ 3.21
XRCC3-215ENST00000555964 SCRIBQ14160 1630 aa34.88■■■■□ 3.17
XRCC3-215ENST00000555964 CC2D2AQ9P2K1 1620 aa34.7■■■■□ 3.14
XRCC3-215ENST00000555964 CECR2Q9BXF3 1484 aa34.61■■■■□ 3.13
XRCC3-215ENST00000555964 EIF4G1Q04637 1599 aaKnown RBP34.6■■■■□ 3.13
XRCC3-215ENST00000555964 NCAPD3P42695 1498 aa33.45■■■□□ 2.95
XRCC3-215ENST00000555964 SMARCA2P51531 1590 aa33.32■■■□□ 2.92
XRCC3-215ENST00000555964 ATAD2BQ9ULI0 1458 aa33.31■■■□□ 2.92
XRCC3-215ENST00000555964 SMARCA4P51532 1647 aa33.3■■■□□ 2.92
XRCC3-215ENST00000555964 HMGXB3Q12766 1538 aa33.27■■■□□ 2.92
XRCC3-215ENST00000555964 CUX2O14529 1486 aa33.23■■■□□ 2.91
XRCC3-215ENST00000555964 ERCC6Q03468 1493 aa33.22■■■□□ 2.91
XRCC3-215ENST00000555964 DNAJC5Q9H3Z4 198 aa33.21■■■□□ 2.91
XRCC3-215ENST00000555964 BAZ1AQ9NRL2 1556 aaPredicted RBP33.15■■■□□ 2.9
XRCC3-215ENST00000555964 BAZ1BQ9UIG0 1483 aaKnown RBP33.04■■■□□ 2.88
XRCC3-215ENST00000555964 PEG3Q9GZU2 1588 aa33■■■□□ 2.87
XRCC3-215ENST00000555964 NESP48681 1621 aa32.87■■■□□ 2.85
XRCC3-215ENST00000555964 LAMC3Q9Y6N6 1575 aa32.79■■■□□ 2.84
XRCC3-215ENST00000555964 MROH2BQ7Z745 1585 aa32.77■■■□□ 2.84
XRCC3-215ENST00000555964 THOC2Q8NI27 1593 aaKnown RBP32.67■■■□□ 2.82
XRCC3-215ENST00000555964 PDS5BQ9NTI5 1447 aa32.59■■■□□ 2.81
XRCC3-215ENST00000555964 KIF21AQ7Z4S6 1674 aa32.56■■■□□ 2.8
XRCC3-215ENST00000555964 CADPSQ9ULU8 1353 aa32.42■■■□□ 2.78
XRCC3-215ENST00000555964 WIZO95785 1651 aa32.4■■■□□ 2.78
XRCC3-215ENST00000555964 MRC2Q9UBG0 1479 aa32.29■■■□□ 2.76
XRCC3-215ENST00000555964 WDR62O43379 1518 aa32.22■■■□□ 2.75
XRCC3-215ENST00000555964 CEP164Q9UPV0 1460 aa32.16■■■□□ 2.74
XRCC3-215ENST00000555964 FANCD2Q9BXW9 1451 aa32.06■■■□□ 2.72
XRCC3-215ENST00000555964 RSF1Q96T23 1441 aaPredicted RBP32.06■■■□□ 2.72
XRCC3-215ENST00000555964 TOP2AP11388 1531 aaKnown RBP32.05■■■□□ 2.72
XRCC3-215ENST00000555964 CFTRP13569 1480 aa32.04■■■□□ 2.72
XRCC3-215ENST00000555964 PRDM2Q13029 1718 aa31.86■■■□□ 2.69
XRCC3-215ENST00000555964 URB2Q14146 1524 aaKnown RBP31.76■■■□□ 2.68
XRCC3-215ENST00000555964 TRIM41Q8WV44 630 aa31.69■■■□□ 2.66
XRCC3-215ENST00000555964 CCDC88BA6NC98 1476 aa31.61■■■□□ 2.65
XRCC3-215ENST00000555964 OSCARQ8IYS5 282 aa31.61■■■□□ 2.65
XRCC3-215ENST00000555964 IFT140Q96RY7 1462 aa31.52■■■□□ 2.64
XRCC3-215ENST00000555964 ABCC8Q09428 1581 aa31.47■■■□□ 2.63
XRCC3-215ENST00000555964 TOPBP1Q92547 1522 aa31.44■■■□□ 2.62
XRCC3-215ENST00000555964 DNMBPQ6XZF7 1577 aa31.37■■■□□ 2.61
XRCC3-215ENST00000555964 ZNF608Q9ULD9 1512 aaPredicted RBP31.36■■■□□ 2.61
XRCC3-215ENST00000555964 EIF4G3O43432 1585 aaKnown RBP31.28■■■□□ 2.6
XRCC3-215ENST00000555964 RIMBP3CA6NJZ7 1639 aa31.23■■■□□ 2.59
XRCC3-215ENST00000555964 RIMBP3BA6NNM3 1639 aa31.23■■■□□ 2.59
XRCC3-215ENST00000555964 RIMBP3Q9UFD9 1639 aa31.23■■■□□ 2.59
XRCC3-215ENST00000555964 TARBP1Q13395 1621 aaKnown RBP31.16■■■□□ 2.58
XRCC3-215ENST00000555964 ARHGEF11O15085 1522 aa31.12■■■□□ 2.57
XRCC3-215ENST00000555964 POLA1P09884 1462 aaPredicted RBP31.1■■■□□ 2.57
XRCC3-215ENST00000555964 CHD1O14646 1710 aa31.09■■■□□ 2.57
XRCC3-215ENST00000555964 AQRO60306 1485 aaKnown RBP eCLIP31.06■■■□□ 2.566e-6■■■■□ 25.1
XRCC3-215ENST00000555964 WDR97A6NE52 1622 aa31■■■□□ 2.55
XRCC3-215ENST00000555964 SOGA1O94964 1423 aa30.95■■■□□ 2.54
XRCC3-215ENST00000555964 RAD54L2Q9Y4B4 1467 aa30.93■■■□□ 2.54
XRCC3-215ENST00000555964 FBLN2P98095 1184 aa30.91■■■□□ 2.54
XRCC3-215ENST00000555964 FGD5Q6ZNL6 1462 aa30.89■■■□□ 2.54
XRCC3-215ENST00000555964 TDRD9Q8NDG6 1382 aaKnown RBP30.85■■■□□ 2.53
XRCC3-215ENST00000555964 CYB5RLQ6IPT4 315 aa30.83■■■□□ 2.53
XRCC3-215ENST00000555964 CUX1P39880 1505 aa30.83■■■□□ 2.53
XRCC3-215ENST00000555964 SNAPC4Q5SXM2 1469 aa30.81■■■□□ 2.52
XRCC3-215ENST00000555964 MAGI1Q96QZ7 1491 aaPredicted RBP30.79■■■□□ 2.52
XRCC3-215ENST00000555964 ARAP1Q96P48 1450 aa30.77■■■□□ 2.52
XRCC3-215ENST00000555964 GRIN2BQ13224 1484 aa30.75■■■□□ 2.51
XRCC3-215ENST00000555964 SYNJ1O43426 1573 aa30.75■■■□□ 2.51
XRCC3-215ENST00000555964 CHMP7Q8WUX9 453 aaPredicted RBP30.7■■■□□ 2.51
XRCC3-215ENST00000555964 CLASP1Q7Z460 1538 aa30.69■■■□□ 2.5
XRCC3-215ENST00000555964 PBRM1Q86U86 1689 aa30.66■■■□□ 2.5
XRCC3-215ENST00000555964 SYNJ2O15056 1496 aa30.66■■■□□ 2.5
XRCC3-215ENST00000555964 GAPVD1Q14C86 1478 aa30.61■■■□□ 2.49
XRCC3-215ENST00000555964 ABCA10Q8WWZ4 1543 aa30.57■■■□□ 2.48
XRCC3-215ENST00000555964 TRHP20396 242 aaPredicted RBP30.56■■■□□ 2.48
XRCC3-215ENST00000555964 ABCA5Q8WWZ7 1642 aa30.55■■■□□ 2.48
XRCC3-215ENST00000555964 SUPT5HO00267 1087 aaKnown RBP30.51■■■□□ 2.47
XRCC3-215ENST00000555964 WRNQ14191 1432 aaPredicted RBP eCLIP30.43■■■□□ 2.46
XRCC3-215ENST00000555964 BIVM-ERCC5R4GMW8 1640 aa30.39■■■□□ 2.46
XRCC3-215ENST00000555964 TOP2BQ02880 1626 aa30.36■■■□□ 2.45
XRCC3-215ENST00000555964 GRIN2AQ12879 1464 aa30.33■■■□□ 2.45
XRCC3-215ENST00000555964 ADAMTS12P58397 1594 aa30.32■■■□□ 2.45
XRCC3-215ENST00000555964 NUP160Q12769 1436 aa30.23■■■□□ 2.43
XRCC3-215ENST00000555964 FHAD1B1AJZ9 1412 aa30.22■■■□□ 2.43
XRCC3-215ENST00000555964 ERICH3Q5RHP9 1530 aa30.22■■■□□ 2.43
XRCC3-215ENST00000555964 CEP170Q5SW79 1584 aa30.2■■■□□ 2.42
XRCC3-215ENST00000555964 SHROOM2Q13796 1616 aa30.14■■■□□ 2.41
XRCC3-215ENST00000555964 ERCC6L2Q5T890 1561 aa30.11■■■□□ 2.41
XRCC3-215ENST00000555964 PRG4Q92954 1404 aaPredicted RBP29.92■■■□□ 2.38
XRCC3-215ENST00000555964 RUSC2Q8N2Y8 1516 aa29.9■■■□□ 2.38
XRCC3-215ENST00000555964 JPH4Q96JJ6 628 aa29.88■■■□□ 2.37
XRCC3-215ENST00000555964 AEBP2Q6ZN18 517 aaPredicted RBP29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms