RNA–Protein interactions for RNA: ENST00000555941.1

LRP1-209, Transcript of LDL receptor related protein 1, humanhuman

TSL 3

Gene LRP1, Length 499 nt, Biotype retained intron, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP1-209ENST00000555941 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
LRP1-209ENST00000555941 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
LRP1-209ENST00000555941 ABCC9O60706 1549 aa25.64■■□□□ 1.7
LRP1-209ENST00000555941 RB1CC1Q8TDY2 1594 aa24.52■■□□□ 1.52
LRP1-209ENST00000555941 NACADO15069 1562 aa24.38■■□□□ 1.49
LRP1-209ENST00000555941 DCAF8L2P0C7V8 631 aa24.18■■□□□ 1.46
LRP1-209ENST00000555941 MYO15BQ96JP2 1530 aa24.11■■□□□ 1.45
LRP1-209ENST00000555941 DNAJC5BQ9UF47 199 aa24■■□□□ 1.43
LRP1-209ENST00000555941 UNC13AQ9UPW8 1703 aa23.9■■□□□ 1.42
LRP1-209ENST00000555941 PABPN1Q86U42 306 aaKnown RBP eCLIP23.87■■□□□ 1.41
LRP1-209ENST00000555941 ZCCHC6Q5VYS8 1495 aaKnown RBP23.81■■□□□ 1.4
LRP1-209ENST00000555941 DCAF1Q9Y4B6 1507 aa23.79■■□□□ 1.4
LRP1-209ENST00000555941 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
LRP1-209ENST00000555941 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
LRP1-209ENST00000555941 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
LRP1-209ENST00000555941 CC2D2AQ9P2K1 1620 aa23.2■■□□□ 1.3
LRP1-209ENST00000555941 EIF4G1Q04637 1599 aaKnown RBP23.18■■□□□ 1.3
LRP1-209ENST00000555941 CECR2Q9BXF3 1484 aa23.13■■□□□ 1.29
LRP1-209ENST00000555941 NCAPD3P42695 1498 aa22.5■■□□□ 1.19
LRP1-209ENST00000555941 ATAD2BQ9ULI0 1458 aa22.41■■□□□ 1.18
LRP1-209ENST00000555941 SMARCA4P51532 1647 aa22.39■■□□□ 1.17
LRP1-209ENST00000555941 SMARCA2P51531 1590 aa22.38■■□□□ 1.17
LRP1-209ENST00000555941 HMGXB3Q12766 1538 aa22.33■■□□□ 1.17
LRP1-209ENST00000555941 BAZ1AQ9NRL2 1556 aaPredicted RBP22.32■■□□□ 1.16
LRP1-209ENST00000555941 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
LRP1-209ENST00000555941 BAZ1BQ9UIG0 1483 aaKnown RBP22.19■■□□□ 1.14
LRP1-209ENST00000555941 ERCC6Q03468 1493 aa22.17■■□□□ 1.14
LRP1-209ENST00000555941 CUX2O14529 1486 aa22.16■■□□□ 1.14
LRP1-209ENST00000555941 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
LRP1-209ENST00000555941 DNAJC5Q9H3Z4 198 aa22.08■■□□□ 1.13
LRP1-209ENST00000555941 NESP48681 1621 aa22.03■■□□□ 1.12
LRP1-209ENST00000555941 LAMC3Q9Y6N6 1575 aa21.98■■□□□ 1.11
LRP1-209ENST00000555941 PDS5BQ9NTI5 1447 aa21.86■■□□□ 1.09
LRP1-209ENST00000555941 THOC2Q8NI27 1593 aaKnown RBP21.82■■□□□ 1.08
LRP1-209ENST00000555941 WIZO95785 1651 aa21.82■■□□□ 1.08
LRP1-209ENST00000555941 CADPSQ9ULU8 1353 aa21.81■■□□□ 1.08
LRP1-209ENST00000555941 KIF21AQ7Z4S6 1674 aa21.77■■□□□ 1.08
LRP1-209ENST00000555941 RSF1Q96T23 1441 aaPredicted RBP21.69■■□□□ 1.06
LRP1-209ENST00000555941 MRC2Q9UBG0 1479 aa21.64■■□□□ 1.05
LRP1-209ENST00000555941 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
LRP1-209ENST00000555941 WDR62O43379 1518 aa21.58■■□□□ 1.04
LRP1-209ENST00000555941 CFTRP13569 1480 aa21.57■■□□□ 1.04
LRP1-209ENST00000555941 CEP164Q9UPV0 1460 aa21.56■■□□□ 1.04
LRP1-209ENST00000555941 FANCD2Q9BXW9 1451 aa21.53■■□□□ 1.04
LRP1-209ENST00000555941 PRDM2Q13029 1718 aa21.35■■□□□ 1.01
LRP1-209ENST00000555941 CCDC88BA6NC98 1476 aa21.34■■□□□ 1.01
LRP1-209ENST00000555941 URB2Q14146 1524 aaKnown RBP21.33■■□□□ 1
LRP1-209ENST00000555941 ABCC8Q09428 1581 aa21.18■□□□□ 0.98
LRP1-209ENST00000555941 OSCARQ8IYS5 282 aa21.17■□□□□ 0.98
LRP1-209ENST00000555941 IFT140Q96RY7 1462 aa21.14■□□□□ 0.98
LRP1-209ENST00000555941 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
LRP1-209ENST00000555941 DNMBPQ6XZF7 1577 aa21.07■□□□□ 0.96
LRP1-209ENST00000555941 TRIM41Q8WV44 630 aa21.05■□□□□ 0.96
LRP1-209ENST00000555941 ZNF608Q9ULD9 1512 aaPredicted RBP21.04■□□□□ 0.96
LRP1-209ENST00000555941 EIF4G3O43432 1585 aaKnown RBP20.94■□□□□ 0.94
LRP1-209ENST00000555941 TARBP1Q13395 1621 aaKnown RBP20.93■□□□□ 0.94
LRP1-209ENST00000555941 POLA1P09884 1462 aaPredicted RBP20.91■□□□□ 0.94
LRP1-209ENST00000555941 AQRO60306 1485 aaKnown RBP eCLIP20.87■□□□□ 0.937e-7■■■■□ 19.4
LRP1-209ENST00000555941 SOGA1O94964 1423 aa20.84■□□□□ 0.93
LRP1-209ENST00000555941 RIMBP3CA6NJZ7 1639 aa20.82■□□□□ 0.92
LRP1-209ENST00000555941 RIMBP3BA6NNM3 1639 aa20.82■□□□□ 0.92
LRP1-209ENST00000555941 RIMBP3Q9UFD9 1639 aa20.82■□□□□ 0.92
LRP1-209ENST00000555941 WDR97A6NE52 1622 aa20.81■□□□□ 0.92
LRP1-209ENST00000555941 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
LRP1-209ENST00000555941 FGD5Q6ZNL6 1462 aa20.78■□□□□ 0.92
LRP1-209ENST00000555941 CHD1O14646 1710 aa20.77■□□□□ 0.92
LRP1-209ENST00000555941 ARHGEF11O15085 1522 aa20.77■□□□□ 0.92
LRP1-209ENST00000555941 CUX1P39880 1505 aa20.76■□□□□ 0.91
LRP1-209ENST00000555941 TDRD9Q8NDG6 1382 aaKnown RBP20.75■□□□□ 0.91
LRP1-209ENST00000555941 FBLN2P98095 1184 aa20.73■□□□□ 0.91
LRP1-209ENST00000555941 SUPT5HO00267 1087 aaKnown RBP20.72■□□□□ 0.91
LRP1-209ENST00000555941 MAGI1Q96QZ7 1491 aaPredicted RBP20.67■□□□□ 0.9
LRP1-209ENST00000555941 GRIN2BQ13224 1484 aa20.66■□□□□ 0.9
LRP1-209ENST00000555941 SNAPC4Q5SXM2 1469 aa20.66■□□□□ 0.9
LRP1-209ENST00000555941 CHMP7Q8WUX9 453 aaPredicted RBP20.63■□□□□ 0.89
LRP1-209ENST00000555941 CYB5RLQ6IPT4 315 aa20.62■□□□□ 0.89
LRP1-209ENST00000555941 ABCA10Q8WWZ4 1543 aa20.58■□□□□ 0.89
LRP1-209ENST00000555941 SYNJ2O15056 1496 aa20.58■□□□□ 0.89
LRP1-209ENST00000555941 GAPVD1Q14C86 1478 aa20.58■□□□□ 0.89
LRP1-209ENST00000555941 SYNJ1O43426 1573 aa20.58■□□□□ 0.88
LRP1-209ENST00000555941 CLASP1Q7Z460 1538 aa20.56■□□□□ 0.88
LRP1-209ENST00000555941 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
LRP1-209ENST00000555941 PBRM1Q86U86 1689 aa20.54■□□□□ 0.88
LRP1-209ENST00000555941 ABCA5Q8WWZ7 1642 aa20.53■□□□□ 0.88
LRP1-209ENST00000555941 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
LRP1-209ENST00000555941 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
LRP1-209ENST00000555941 BIVM-ERCC5R4GMW8 1640 aa20.48■□□□□ 0.87
LRP1-209ENST00000555941 GRIN2AQ12879 1464 aa20.37■□□□□ 0.85
LRP1-209ENST00000555941 TRHP20396 242 aaPredicted RBP20.37■□□□□ 0.85
LRP1-209ENST00000555941 ADAMTS12P58397 1594 aa20.36■□□□□ 0.85
LRP1-209ENST00000555941 FHAD1B1AJZ9 1412 aa20.35■□□□□ 0.85
LRP1-209ENST00000555941 ERICH3Q5RHP9 1530 aa20.34■□□□□ 0.85
LRP1-209ENST00000555941 NUP160Q12769 1436 aa20.32■□□□□ 0.84
LRP1-209ENST00000555941 CEP170Q5SW79 1584 aa20.27■□□□□ 0.84
LRP1-209ENST00000555941 SHROOM2Q13796 1616 aa20.22■□□□□ 0.83
LRP1-209ENST00000555941 ERCC6L2Q5T890 1561 aa20.18■□□□□ 0.82
LRP1-209ENST00000555941 JPH4Q96JJ6 628 aa20.12■□□□□ 0.81
LRP1-209ENST00000555941 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
LRP1-209ENST00000555941 PRG4Q92954 1404 aaPredicted RBP20.1■□□□□ 0.81
LRP1-209ENST00000555941 IGF1RP08069 1367 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms