RNA–Protein interactions for RNA: ENST00000555906.5

PRKCH-219, Transcript of protein kinase C eta, humanhuman

TSL 3

Gene PRKCH, Length 459 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-219ENST00000555906 NISCHQ9Y2I1 1504 aa49.53■■■■■ 5.52
PRKCH-219ENST00000555906 CCDC180Q9P1Z9 1646 aa44.53■■■■■ 4.72
PRKCH-219ENST00000555906 ABCC9O60706 1549 aa44.14■■■■■ 4.66
PRKCH-219ENST00000555906 RB1CC1Q8TDY2 1594 aa42.22■■■■■ 4.35
PRKCH-219ENST00000555906 NACADO15069 1562 aa41.97■■■■■ 4.31
PRKCH-219ENST00000555906 MYO15BQ96JP2 1530 aa41.49■■■■■ 4.23
PRKCH-219ENST00000555906 DCAF8L2P0C7V8 631 aa41.43■■■■■ 4.22
PRKCH-219ENST00000555906 UNC13AQ9UPW8 1703 aa41.34■■■■■ 4.21
PRKCH-219ENST00000555906 ZCCHC6Q5VYS8 1495 aaKnown RBP41.14■■■■■ 4.18
PRKCH-219ENST00000555906 DNAJC5BQ9UF47 199 aa41.13■■■■■ 4.17
PRKCH-219ENST00000555906 DCAF1Q9Y4B6 1507 aa41.01■■■■■ 4.16
PRKCH-219ENST00000555906 PABPN1Q86U42 306 aaKnown RBP eCLIP40.99■■■■■ 4.15
PRKCH-219ENST00000555906 BICRAQ9NZM4 1560 aa40.97■■■■■ 4.15
PRKCH-219ENST00000555906 SHROOM4Q9ULL8 1493 aa40.54■■■■■ 4.08
PRKCH-219ENST00000555906 SCRIBQ14160 1630 aa40.46■■■■■ 4.07
PRKCH-219ENST00000555906 CC2D2AQ9P2K1 1620 aa39.98■■■■□ 3.99
PRKCH-219ENST00000555906 EIF4G1Q04637 1599 aaKnown RBP39.95■■■■□ 3.99
PRKCH-219ENST00000555906 CECR2Q9BXF3 1484 aa39.78■■■■□ 3.96
PRKCH-219ENST00000555906 NCAPD3P42695 1498 aa38.67■■■■□ 3.78
PRKCH-219ENST00000555906 SMARCA4P51532 1647 aa38.66■■■■□ 3.78
PRKCH-219ENST00000555906 ATAD2BQ9ULI0 1458 aa38.57■■■■□ 3.76
PRKCH-219ENST00000555906 SMARCA2P51531 1590 aa38.55■■■■□ 3.76
PRKCH-219ENST00000555906 HMGXB3Q12766 1538 aa38.51■■■■□ 3.76
PRKCH-219ENST00000555906 BAZ1AQ9NRL2 1556 aaPredicted RBP38.48■■■■□ 3.75
PRKCH-219ENST00000555906 PEG3Q9GZU2 1588 aa38.32■■■■□ 3.73
PRKCH-219ENST00000555906 BAZ1BQ9UIG0 1483 aaKnown RBP38.23■■■■□ 3.71
PRKCH-219ENST00000555906 ERCC6Q03468 1493 aa38.14■■■■□ 3.7
PRKCH-219ENST00000555906 MROH2BQ7Z745 1585 aa38.13■■■■□ 3.69
PRKCH-219ENST00000555906 CUX2O14529 1486 aa38.09■■■■□ 3.69
PRKCH-219ENST00000555906 NESP48681 1621 aa37.97■■■■□ 3.67
PRKCH-219ENST00000555906 LAMC3Q9Y6N6 1575 aa37.86■■■■□ 3.65
PRKCH-219ENST00000555906 WIZO95785 1651 aa37.72■■■■□ 3.63
PRKCH-219ENST00000555906 THOC2Q8NI27 1593 aaKnown RBP37.72■■■■□ 3.63
PRKCH-219ENST00000555906 DNAJC5Q9H3Z4 198 aa37.7■■■■□ 3.63
PRKCH-219ENST00000555906 KIF21AQ7Z4S6 1674 aa37.63■■■■□ 3.61
PRKCH-219ENST00000555906 PDS5BQ9NTI5 1447 aa37.54■■■■□ 3.6
PRKCH-219ENST00000555906 CADPSQ9ULU8 1353 aa37.46■■■■□ 3.59
PRKCH-219ENST00000555906 RSF1Q96T23 1441 aaPredicted RBP37.36■■■■□ 3.57
PRKCH-219ENST00000555906 TOP2AP11388 1531 aaKnown RBP37.3■■■■□ 3.56
PRKCH-219ENST00000555906 MRC2Q9UBG0 1479 aa37.26■■■■□ 3.55
PRKCH-219ENST00000555906 WDR62O43379 1518 aa37.21■■■■□ 3.55
PRKCH-219ENST00000555906 CEP164Q9UPV0 1460 aa37.13■■■■□ 3.54
PRKCH-219ENST00000555906 CFTRP13569 1480 aa37.13■■■■□ 3.53
PRKCH-219ENST00000555906 FANCD2Q9BXW9 1451 aa37.07■■■■□ 3.53
PRKCH-219ENST00000555906 PRDM2Q13029 1718 aa36.97■■■■□ 3.51
PRKCH-219ENST00000555906 URB2Q14146 1524 aaKnown RBP36.77■■■■□ 3.48
PRKCH-219ENST00000555906 CCDC88BA6NC98 1476 aa36.76■■■■□ 3.48
PRKCH-219ENST00000555906 TOPBP1Q92547 1522 aa36.41■■■■□ 3.42
PRKCH-219ENST00000555906 IFT140Q96RY7 1462 aa36.38■■■■□ 3.41
PRKCH-219ENST00000555906 ABCC8Q09428 1581 aa36.36■■■■□ 3.41
PRKCH-219ENST00000555906 DNMBPQ6XZF7 1577 aa36.35■■■■□ 3.41
PRKCH-219ENST00000555906 ZNF608Q9ULD9 1512 aaPredicted RBP36.26■■■■□ 3.4
PRKCH-219ENST00000555906 EIF4G3O43432 1585 aaKnown RBP36.19■■■■□ 3.38
PRKCH-219ENST00000555906 OSCARQ8IYS5 282 aa36.18■■■■□ 3.38
PRKCH-219ENST00000555906 TARBP1Q13395 1621 aaKnown RBP36.13■■■■□ 3.37
PRKCH-219ENST00000555906 TRIM41Q8WV44 630 aa36.06■■■■□ 3.36
PRKCH-219ENST00000555906 POLA1P09884 1462 aaPredicted RBP36.05■■■■□ 3.36
PRKCH-219ENST00000555906 CHD1O14646 1710 aa35.9■■■■□ 3.34
PRKCH-219ENST00000555906 AQRO60306 1485 aaKnown RBP eCLIP35.9■■■■□ 3.34
PRKCH-219ENST00000555906 RIMBP3CA6NJZ7 1639 aa35.88■■■■□ 3.33
PRKCH-219ENST00000555906 RIMBP3BA6NNM3 1639 aa35.88■■■■□ 3.33
PRKCH-219ENST00000555906 RIMBP3Q9UFD9 1639 aa35.88■■■■□ 3.33
PRKCH-219ENST00000555906 WDR97A6NE52 1622 aa35.87■■■■□ 3.33
PRKCH-219ENST00000555906 CUX1P39880 1505 aa35.84■■■■□ 3.33
PRKCH-219ENST00000555906 FGD5Q6ZNL6 1462 aa35.84■■■■□ 3.33
PRKCH-219ENST00000555906 RAD54L2Q9Y4B4 1467 aa35.84■■■■□ 3.33
PRKCH-219ENST00000555906 SOGA1O94964 1423 aa35.8■■■■□ 3.32
PRKCH-219ENST00000555906 ARHGEF11O15085 1522 aa35.77■■■■□ 3.32
PRKCH-219ENST00000555906 TDRD9Q8NDG6 1382 aaKnown RBP35.67■■■■□ 3.3
PRKCH-219ENST00000555906 SUPT5HO00267 1087 aaKnown RBP35.64■■■■□ 3.3
PRKCH-219ENST00000555906 SNAPC4Q5SXM2 1469 aa35.63■■■■□ 3.29
PRKCH-219ENST00000555906 MAGI1Q96QZ7 1491 aaPredicted RBP35.58■■■■□ 3.29
PRKCH-219ENST00000555906 GRIN2BQ13224 1484 aa35.55■■■■□ 3.28
PRKCH-219ENST00000555906 PBRM1Q86U86 1689 aa35.55■■■■□ 3.28
PRKCH-219ENST00000555906 FBLN2P98095 1184 aa35.52■■■■□ 3.28
PRKCH-219ENST00000555906 ABCA5Q8WWZ7 1642 aa35.47■■■■□ 3.27
PRKCH-219ENST00000555906 CLASP1Q7Z460 1538 aa35.47■■■■□ 3.27
PRKCH-219ENST00000555906 ABCA10Q8WWZ4 1543 aa35.47■■■■□ 3.27
PRKCH-219ENST00000555906 SYNJ1O43426 1573 aa35.46■■■■□ 3.27
PRKCH-219ENST00000555906 SYNJ2O15056 1496 aa35.43■■■■□ 3.26
PRKCH-219ENST00000555906 GAPVD1Q14C86 1478 aa35.43■■■■□ 3.26
PRKCH-219ENST00000555906 ARAP1Q96P48 1450 aa35.41■■■■□ 3.26
PRKCH-219ENST00000555906 BIVM-ERCC5R4GMW8 1640 aa35.41■■■■□ 3.26
PRKCH-219ENST00000555906 TOP2BQ02880 1626 aa35.36■■■■□ 3.25
PRKCH-219ENST00000555906 CHMP7Q8WUX9 453 aaPredicted RBP35.34■■■■□ 3.25
PRKCH-219ENST00000555906 WRNQ14191 1432 aaPredicted RBP eCLIP35.3■■■■□ 3.24
PRKCH-219ENST00000555906 CYB5RLQ6IPT4 315 aa35.29■■■■□ 3.24
PRKCH-219ENST00000555906 ADAMTS12P58397 1594 aa35.19■■■■□ 3.22
PRKCH-219ENST00000555906 GRIN2AQ12879 1464 aa35.11■■■■□ 3.21
PRKCH-219ENST00000555906 ERICH3Q5RHP9 1530 aa35.06■■■■□ 3.2
PRKCH-219ENST00000555906 CEP170Q5SW79 1584 aa35■■■■□ 3.19
PRKCH-219ENST00000555906 FHAD1B1AJZ9 1412 aa34.99■■■■□ 3.19
PRKCH-219ENST00000555906 NUP160Q12769 1436 aa34.99■■■■□ 3.19
PRKCH-219ENST00000555906 SHROOM2Q13796 1616 aa34.9■■■■□ 3.18
PRKCH-219ENST00000555906 ERCC6L2Q5T890 1561 aa34.85■■■■□ 3.17
PRKCH-219ENST00000555906 TRHP20396 242 aaPredicted RBP34.84■■■■□ 3.17
PRKCH-219ENST00000555906 RUSC2Q8N2Y8 1516 aa34.71■■■■□ 3.15
PRKCH-219ENST00000555906 CUL7Q14999 1698 aa34.63■■■■□ 3.13
PRKCH-219ENST00000555906 KIF27Q86VH2 1401 aa34.59■■■■□ 3.13
PRKCH-219ENST00000555906 PRG4Q92954 1404 aaPredicted RBP34.56■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms