RNA–Protein interactions for RNA: ENST00000555709.6

MTHFD1-211, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 2

Gene MTHFD1, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-211ENST00000555709 NISCHQ9Y2I1 1504 aa28.32■■■□□ 2.12
MTHFD1-211ENST00000555709 ABCC9O60706 1549 aa26.6■■□□□ 1.85
MTHFD1-211ENST00000555709 DNAJC5BQ9UF47 199 aa25.8■■□□□ 1.72
MTHFD1-211ENST00000555709 CCDC180Q9P1Z9 1646 aa25.77■■□□□ 1.72
MTHFD1-211ENST00000555709 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
MTHFD1-211ENST00000555709 PABPN1Q86U42 306 aaKnown RBP eCLIP24.62■■□□□ 1.53
MTHFD1-211ENST00000555709 NACADO15069 1562 aa24.57■■□□□ 1.52
MTHFD1-211ENST00000555709 UNC13AQ9UPW8 1703 aa24.41■■□□□ 1.5
MTHFD1-211ENST00000555709 BICRAQ9NZM4 1560 aa24.31■■□□□ 1.48
MTHFD1-211ENST00000555709 DNAJC5Q9H3Z4 198 aa24.28■■□□□ 1.48
MTHFD1-211ENST00000555709 DCAF8L2P0C7V8 631 aa24.15■■□□□ 1.46
MTHFD1-211ENST00000555709 CECR2Q9BXF3 1484 aa24.06■■□□□ 1.44
MTHFD1-211ENST00000555709 CC2D2AQ9P2K1 1620 aa24■■□□□ 1.43
MTHFD1-211ENST00000555709 MYO15BQ96JP2 1530 aa23.99■■□□□ 1.43
MTHFD1-211ENST00000555709 SHROOM4Q9ULL8 1493 aa23.86■■□□□ 1.41
MTHFD1-211ENST00000555709 EIF4G1Q04637 1599 aaKnown RBP23.74■■□□□ 1.39
MTHFD1-211ENST00000555709 SCRIBQ14160 1630 aa23.4■■□□□ 1.34
MTHFD1-211ENST00000555709 DCAF1Q9Y4B6 1507 aa23.36■■□□□ 1.33
MTHFD1-211ENST00000555709 ZCCHC6Q5VYS8 1495 aaKnown RBP23.3■■□□□ 1.32
MTHFD1-211ENST00000555709 CUX2O14529 1486 aa23.29■■□□□ 1.32
MTHFD1-211ENST00000555709 ERCC6Q03468 1493 aa22.98■■□□□ 1.27
MTHFD1-211ENST00000555709 TRIM41Q8WV44 630 aa22.77■■□□□ 1.24
MTHFD1-211ENST00000555709 NCAPD3P42695 1498 aa22.73■■□□□ 1.23
MTHFD1-211ENST00000555709 NESP48681 1621 aa22.63■■□□□ 1.21
MTHFD1-211ENST00000555709 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
MTHFD1-211ENST00000555709 ATAD2BQ9ULI0 1458 aa22.53■■□□□ 1.2
MTHFD1-211ENST00000555709 HMGXB3Q12766 1538 aa22.46■■□□□ 1.19
MTHFD1-211ENST00000555709 SMARCA2P51531 1590 aa22.37■■□□□ 1.17
MTHFD1-211ENST00000555709 LAMC3Q9Y6N6 1575 aa22.31■■□□□ 1.16
MTHFD1-211ENST00000555709 KIF21AQ7Z4S6 1674 aa22.29■■□□□ 1.16
MTHFD1-211ENST00000555709 SMARCA4P51532 1647 aa22.26■■□□□ 1.15
MTHFD1-211ENST00000555709 BAZ1BQ9UIG0 1483 aaKnown RBP22.21■■□□□ 1.15
MTHFD1-211ENST00000555709 PDS5BQ9NTI5 1447 aa22.19■■□□□ 1.14
MTHFD1-211ENST00000555709 BAZ1AQ9NRL2 1556 aaPredicted RBP22.13■■□□□ 1.13
MTHFD1-211ENST00000555709 PEG3Q9GZU2 1588 aa22.09■■□□□ 1.13
MTHFD1-211ENST00000555709 MRC2Q9UBG0 1479 aa22.08■■□□□ 1.12
MTHFD1-211ENST00000555709 WDR62O43379 1518 aa22.07■■□□□ 1.12
MTHFD1-211ENST00000555709 OSCARQ8IYS5 282 aa22.04■■□□□ 1.12
MTHFD1-211ENST00000555709 CADPSQ9ULU8 1353 aa21.96■■□□□ 1.11
MTHFD1-211ENST00000555709 RIMBP3CA6NJZ7 1639 aa21.89■■□□□ 1.09
MTHFD1-211ENST00000555709 RIMBP3BA6NNM3 1639 aa21.89■■□□□ 1.09
MTHFD1-211ENST00000555709 RIMBP3Q9UFD9 1639 aa21.89■■□□□ 1.09
MTHFD1-211ENST00000555709 MROH2BQ7Z745 1585 aa21.82■■□□□ 1.08
MTHFD1-211ENST00000555709 CEP164Q9UPV0 1460 aa21.79■■□□□ 1.08
MTHFD1-211ENST00000555709 ARHGEF11O15085 1522 aa21.74■■□□□ 1.07
MTHFD1-211ENST00000555709 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
MTHFD1-211ENST00000555709 URB2Q14146 1524 aaKnown RBP21.61■■□□□ 1.05
MTHFD1-211ENST00000555709 CYB5RLQ6IPT4 315 aa21.58■■□□□ 1.05
MTHFD1-211ENST00000555709 TRHP20396 242 aaPredicted RBP21.57■■□□□ 1.04
MTHFD1-211ENST00000555709 AEBP2Q6ZN18 517 aaPredicted RBP21.55■■□□□ 1.04
MTHFD1-211ENST00000555709 CFTRP13569 1480 aa21.55■■□□□ 1.04
MTHFD1-211ENST00000555709 WIZO95785 1651 aa21.49■■□□□ 1.03
MTHFD1-211ENST00000555709 ZNF608Q9ULD9 1512 aaPredicted RBP21.49■■□□□ 1.03
MTHFD1-211ENST00000555709 ARAP1Q96P48 1450 aa21.48■■□□□ 1.03
MTHFD1-211ENST00000555709 IFT140Q96RY7 1462 aa21.4■■□□□ 1.02
MTHFD1-211ENST00000555709 RSF1Q96T23 1441 aaPredicted RBP21.31■■□□□ 1
MTHFD1-211ENST00000555709 EIF4G3O43432 1585 aaKnown RBP21.3■■□□□ 1
MTHFD1-211ENST00000555709 CHD1O14646 1710 aa21.29■■□□□ 1
MTHFD1-211ENST00000555709 PRDM2Q13029 1718 aa21.22■□□□□ 0.99
MTHFD1-211ENST00000555709 TOPBP1Q92547 1522 aa21.21■□□□□ 0.99
MTHFD1-211ENST00000555709 TOP2AP11388 1531 aaKnown RBP21.16■□□□□ 0.98
MTHFD1-211ENST00000555709 AQRO60306 1485 aaKnown RBP eCLIP21.16■□□□□ 0.98
MTHFD1-211ENST00000555709 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
MTHFD1-211ENST00000555709 FBLN2P98095 1184 aa21.11■□□□□ 0.97
MTHFD1-211ENST00000555709 ABCC8Q09428 1581 aa21.08■□□□□ 0.97
MTHFD1-211ENST00000555709 CLASP1Q7Z460 1538 aa21.08■□□□□ 0.96
MTHFD1-211ENST00000555709 DNMBPQ6XZF7 1577 aa21.05■□□□□ 0.96
MTHFD1-211ENST00000555709 SUPT5HO00267 1087 aaKnown RBP20.96■□□□□ 0.95
MTHFD1-211ENST00000555709 POLA1P09884 1462 aaPredicted RBP20.94■□□□□ 0.94
MTHFD1-211ENST00000555709 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
MTHFD1-211ENST00000555709 SYNJ1O43426 1573 aa20.92■□□□□ 0.94
MTHFD1-211ENST00000555709 SNAPC4Q5SXM2 1469 aa20.91■□□□□ 0.94
MTHFD1-211ENST00000555709 GAPVD1Q14C86 1478 aa20.88■□□□□ 0.93
MTHFD1-211ENST00000555709 TDRD9Q8NDG6 1382 aaKnown RBP20.88■□□□□ 0.93
MTHFD1-211ENST00000555709 RAD54L2Q9Y4B4 1467 aa20.88■□□□□ 0.93
MTHFD1-211ENST00000555709 ILDR1Q86SU0 546 aaPredicted RBP20.85■□□□□ 0.93
MTHFD1-211ENST00000555709 CHMP7Q8WUX9 453 aaPredicted RBP20.84■□□□□ 0.93
MTHFD1-211ENST00000555709 MAGI1Q96QZ7 1491 aaPredicted RBP20.82■□□□□ 0.92
MTHFD1-211ENST00000555709 SOGA1O94964 1423 aa20.8■□□□□ 0.92
MTHFD1-211ENST00000555709 WDR97A6NE52 1622 aa20.8■□□□□ 0.92
MTHFD1-211ENST00000555709 SYNJ2O15056 1496 aa20.77■□□□□ 0.92
MTHFD1-211ENST00000555709 GRIN2BQ13224 1484 aa20.73■□□□□ 0.91
MTHFD1-211ENST00000555709 ERCC6L2Q5T890 1561 aa20.69■□□□□ 0.9
MTHFD1-211ENST00000555709 FGD5Q6ZNL6 1462 aa20.68■□□□□ 0.9
MTHFD1-211ENST00000555709 KIF13AQ9H1H9 1805 aa20.67■□□□□ 0.9
MTHFD1-211ENST00000555709 KDM4FA0A1W2PPD8 638 aa20.62■□□□□ 0.89
MTHFD1-211ENST00000555709 PBRM1Q86U86 1689 aa20.58■□□□□ 0.88
MTHFD1-211ENST00000555709 CEP170Q5SW79 1584 aa20.55■□□□□ 0.88
MTHFD1-211ENST00000555709 CUX1P39880 1505 aa20.54■□□□□ 0.88
MTHFD1-211ENST00000555709 SHROOM2Q13796 1616 aa20.48■□□□□ 0.87
MTHFD1-211ENST00000555709 NUP160Q12769 1436 aa20.47■□□□□ 0.87
MTHFD1-211ENST00000555709 GRIN2AQ12879 1464 aa20.47■□□□□ 0.87
MTHFD1-211ENST00000555709 ABCA5Q8WWZ7 1642 aa20.46■□□□□ 0.87
MTHFD1-211ENST00000555709 ABCC10Q5T3U5 1492 aa20.44■□□□□ 0.86
MTHFD1-211ENST00000555709 FAM69CQ0P6D2 419 aa20.42■□□□□ 0.86
MTHFD1-211ENST00000555709 ABCA10Q8WWZ4 1543 aa20.41■□□□□ 0.86
MTHFD1-211ENST00000555709 KDM6BO15054 1643 aa20.38■□□□□ 0.85
MTHFD1-211ENST00000555709 DIP2BQ9P265 1576 aa20.37■□□□□ 0.85
MTHFD1-211ENST00000555709 ADAMTS12P58397 1594 aa20.36■□□□□ 0.85
MTHFD1-211ENST00000555709 MAPKBP1O60336 1514 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms