RNA–Protein interactions for RNA: ENST00000555648.1

SNX6-205, Transcript of sorting nexin 6, humanhuman

TSL 3

Gene SNX6, Length 467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-205ENST00000555648 NISCHQ9Y2I1 1504 aa37.94■■■■□ 3.66
SNX6-205ENST00000555648 CCDC180Q9P1Z9 1646 aa33.85■■■■□ 3.01
SNX6-205ENST00000555648 ABCC9O60706 1549 aa33.79■■■■□ 3
SNX6-205ENST00000555648 RB1CC1Q8TDY2 1594 aa32.23■■■□□ 2.75
SNX6-205ENST00000555648 DCAF8L2P0C7V8 631 aa32.19■■■□□ 2.74
SNX6-205ENST00000555648 NACADO15069 1562 aa32.06■■■□□ 2.72
SNX6-205ENST00000555648 MYO15BQ96JP2 1530 aa31.65■■■□□ 2.66
SNX6-205ENST00000555648 PABPN1Q86U42 306 aaKnown RBP eCLIP31.56■■■□□ 2.64
SNX6-205ENST00000555648 ZCCHC6Q5VYS8 1495 aaKnown RBP31.47■■■□□ 2.63
SNX6-205ENST00000555648 DNAJC5BQ9UF47 199 aa31.43■■■□□ 2.62
SNX6-205ENST00000555648 DCAF1Q9Y4B6 1507 aa31.33■■■□□ 2.61
SNX6-205ENST00000555648 UNC13AQ9UPW8 1703 aa31.25■■■□□ 2.59
SNX6-205ENST00000555648 BICRAQ9NZM4 1560 aa31.14■■■□□ 2.58
SNX6-205ENST00000555648 SCRIBQ14160 1630 aa30.95■■■□□ 2.54
SNX6-205ENST00000555648 SHROOM4Q9ULL8 1493 aa30.87■■■□□ 2.53
SNX6-205ENST00000555648 EIF4G1Q04637 1599 aaKnown RBP30.45■■■□□ 2.46
SNX6-205ENST00000555648 CC2D2AQ9P2K1 1620 aa30.44■■■□□ 2.46
SNX6-205ENST00000555648 CECR2Q9BXF3 1484 aa30.42■■■□□ 2.46
SNX6-205ENST00000555648 NCAPD3P42695 1498 aa29.6■■■□□ 2.33
SNX6-205ENST00000555648 ATAD2BQ9ULI0 1458 aa29.55■■■□□ 2.32
SNX6-205ENST00000555648 SMARCA4P51532 1647 aa29.5■■■□□ 2.31
SNX6-205ENST00000555648 SMARCA2P51531 1590 aa29.48■■■□□ 2.31
SNX6-205ENST00000555648 BAZ1AQ9NRL2 1556 aaPredicted RBP29.46■■■□□ 2.31
SNX6-205ENST00000555648 HMGXB3Q12766 1538 aa29.36■■■□□ 2.29
SNX6-205ENST00000555648 BAZ1BQ9UIG0 1483 aaKnown RBP29.31■■■□□ 2.28
SNX6-205ENST00000555648 ERCC6Q03468 1493 aa29.23■■■□□ 2.27
SNX6-205ENST00000555648 MROH2BQ7Z745 1585 aa29.22■■■□□ 2.27
SNX6-205ENST00000555648 PEG3Q9GZU2 1588 aa29.19■■■□□ 2.26
SNX6-205ENST00000555648 NESP48681 1621 aa29.02■■■□□ 2.24
SNX6-205ENST00000555648 CUX2O14529 1486 aa29.02■■■□□ 2.24
SNX6-205ENST00000555648 LAMC3Q9Y6N6 1575 aa28.87■■■□□ 2.21
SNX6-205ENST00000555648 WIZO95785 1651 aa28.83■■■□□ 2.21
SNX6-205ENST00000555648 PDS5BQ9NTI5 1447 aa28.81■■■□□ 2.2
SNX6-205ENST00000555648 DNAJC5Q9H3Z4 198 aa28.78■■■□□ 2.2
SNX6-205ENST00000555648 CADPSQ9ULU8 1353 aa28.76■■■□□ 2.2
SNX6-205ENST00000555648 RSF1Q96T23 1441 aaPredicted RBP28.75■■■□□ 2.19
SNX6-205ENST00000555648 THOC2Q8NI27 1593 aaKnown RBP28.61■■■□□ 2.17
SNX6-205ENST00000555648 KIF21AQ7Z4S6 1674 aa28.56■■■□□ 2.16
SNX6-205ENST00000555648 TOP2AP11388 1531 aaKnown RBP28.55■■■□□ 2.16
SNX6-205ENST00000555648 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
SNX6-205ENST00000555648 CEP164Q9UPV0 1460 aa28.44■■■□□ 2.14
SNX6-205ENST00000555648 CFTRP13569 1480 aa28.43■■■□□ 2.14
SNX6-205ENST00000555648 FANCD2Q9BXW9 1451 aa28.42■■■□□ 2.14
SNX6-205ENST00000555648 WDR62O43379 1518 aa28.34■■■□□ 2.13
SNX6-205ENST00000555648 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
SNX6-205ENST00000555648 URB2Q14146 1524 aaKnown RBP28.1■■■□□ 2.09
SNX6-205ENST00000555648 PRDM2Q13029 1718 aa27.98■■■□□ 2.07
SNX6-205ENST00000555648 ABCC8Q09428 1581 aa27.89■■■□□ 2.05
SNX6-205ENST00000555648 TOPBP1Q92547 1522 aa27.87■■■□□ 2.05
SNX6-205ENST00000555648 IFT140Q96RY7 1462 aa27.86■■■□□ 2.05
SNX6-205ENST00000555648 OSCARQ8IYS5 282 aa27.85■■■□□ 2.05
SNX6-205ENST00000555648 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
SNX6-205ENST00000555648 DNMBPQ6XZF7 1577 aa27.77■■■□□ 2.04
SNX6-205ENST00000555648 ZNF608Q9ULD9 1512 aaPredicted RBP27.73■■■□□ 2.03
SNX6-205ENST00000555648 TRIM41Q8WV44 630 aa27.72■■■□□ 2.03
SNX6-205ENST00000555648 POLA1P09884 1462 aaPredicted RBP27.6■■■□□ 2.01
SNX6-205ENST00000555648 AQRO60306 1485 aaKnown RBP eCLIP27.57■■■□□ 2
SNX6-205ENST00000555648 SOGA1O94964 1423 aa27.56■■■□□ 2
SNX6-205ENST00000555648 EIF4G3O43432 1585 aaKnown RBP27.55■■■□□ 2
SNX6-205ENST00000555648 RAD54L2Q9Y4B4 1467 aa27.51■■■□□ 2
SNX6-205ENST00000555648 TARBP1Q13395 1621 aaKnown RBP27.51■■□□□ 1.99
SNX6-205ENST00000555648 FBLN2P98095 1184 aa27.49■■□□□ 1.99
SNX6-205ENST00000555648 FGD5Q6ZNL6 1462 aa27.48■■□□□ 1.99
SNX6-205ENST00000555648 TDRD9Q8NDG6 1382 aaKnown RBP27.47■■□□□ 1.99
SNX6-205ENST00000555648 CUX1P39880 1505 aa27.44■■□□□ 1.98
SNX6-205ENST00000555648 CHMP7Q8WUX9 453 aaPredicted RBP27.31■■□□□ 1.96
SNX6-205ENST00000555648 WDR97A6NE52 1622 aa27.3■■□□□ 1.96
SNX6-205ENST00000555648 SNAPC4Q5SXM2 1469 aa27.28■■□□□ 1.96
SNX6-205ENST00000555648 GRIN2BQ13224 1484 aa27.27■■□□□ 1.96
SNX6-205ENST00000555648 RIMBP3CA6NJZ7 1639 aa27.26■■□□□ 1.95
SNX6-205ENST00000555648 RIMBP3BA6NNM3 1639 aa27.26■■□□□ 1.95
SNX6-205ENST00000555648 RIMBP3Q9UFD9 1639 aa27.26■■□□□ 1.95
SNX6-205ENST00000555648 ARHGEF11O15085 1522 aa27.26■■□□□ 1.95
SNX6-205ENST00000555648 CHD1O14646 1710 aa27.24■■□□□ 1.95
SNX6-205ENST00000555648 MAGI1Q96QZ7 1491 aaPredicted RBP27.23■■□□□ 1.95
SNX6-205ENST00000555648 GAPVD1Q14C86 1478 aa27.19■■□□□ 1.94
SNX6-205ENST00000555648 WRNQ14191 1432 aaPredicted RBP eCLIP27.19■■□□□ 1.94
SNX6-205ENST00000555648 CYB5RLQ6IPT4 315 aa27.19■■□□□ 1.94
SNX6-205ENST00000555648 ABCA10Q8WWZ4 1543 aa27.16■■□□□ 1.94
SNX6-205ENST00000555648 SYNJ2O15056 1496 aa27.13■■□□□ 1.93
SNX6-205ENST00000555648 SYNJ1O43426 1573 aa27.09■■□□□ 1.93
SNX6-205ENST00000555648 TOP2BQ02880 1626 aa27.05■■□□□ 1.92
SNX6-205ENST00000555648 ABCA5Q8WWZ7 1642 aa27.02■■□□□ 1.92
SNX6-205ENST00000555648 PBRM1Q86U86 1689 aa27.01■■□□□ 1.92
SNX6-205ENST00000555648 BIVM-ERCC5R4GMW8 1640 aa27.01■■□□□ 1.91
SNX6-205ENST00000555648 ARAP1Q96P48 1450 aa27■■□□□ 1.91
SNX6-205ENST00000555648 CLASP1Q7Z460 1538 aa26.99■■□□□ 1.91
SNX6-205ENST00000555648 GRIN2AQ12879 1464 aa26.88■■□□□ 1.89
SNX6-205ENST00000555648 FHAD1B1AJZ9 1412 aa26.88■■□□□ 1.89
SNX6-205ENST00000555648 TRHP20396 242 aaPredicted RBP26.87■■□□□ 1.89
SNX6-205ENST00000555648 ADAMTS12P58397 1594 aa26.84■■□□□ 1.89
SNX6-205ENST00000555648 ERICH3Q5RHP9 1530 aa26.83■■□□□ 1.89
SNX6-205ENST00000555648 NUP160Q12769 1436 aa26.77■■□□□ 1.88
SNX6-205ENST00000555648 CEP170Q5SW79 1584 aa26.71■■□□□ 1.87
SNX6-205ENST00000555648 KIF27Q86VH2 1401 aa26.68■■□□□ 1.86
SNX6-205ENST00000555648 JPH4Q96JJ6 628 aa26.61■■□□□ 1.85
SNX6-205ENST00000555648 IGF1RP08069 1367 aa26.58■■□□□ 1.85
SNX6-205ENST00000555648 ERCC6L2Q5T890 1561 aa26.58■■□□□ 1.85
SNX6-205ENST00000555648 PRG4Q92954 1404 aaPredicted RBP26.56■■□□□ 1.84
SNX6-205ENST00000555648 SHROOM2Q13796 1616 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms