RNA–Protein interactions for RNA: ENST00000555632.5

GABRB3-209, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

TSL 5

Gene GABRB3, Length 2,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-209ENST00000555632 NISCHQ9Y2I1 1504 aa40.82■■■■■ 4.13
GABRB3-209ENST00000555632 CCDC180Q9P1Z9 1646 aa35.23■■■■□ 3.23
GABRB3-209ENST00000555632 ZCCHC6Q5VYS8 1495 aaKnown RBP34.36■■■■□ 3.09
GABRB3-209ENST00000555632 SHROOM4Q9ULL8 1493 aa33.9■■■■□ 3.02
GABRB3-209ENST00000555632 DCAF8L2P0C7V8 631 aa33.89■■■■□ 3.02
GABRB3-209ENST00000555632 DCAF1Q9Y4B6 1507 aa33.58■■■□□ 2.97
GABRB3-209ENST00000555632 ABCC9O60706 1549 aa33.31■■■□□ 2.92
GABRB3-209ENST00000555632 MYO15BQ96JP2 1530 aa33■■■□□ 2.87
GABRB3-209ENST00000555632 SUPT5HO00267 1087 aaKnown RBP32.78■■■□□ 2.84
GABRB3-209ENST00000555632 NACADO15069 1562 aa32.77■■■□□ 2.84
GABRB3-209ENST00000555632 SCRIBQ14160 1630 aa32.74■■■□□ 2.83
GABRB3-209ENST00000555632 RB1CC1Q8TDY2 1594 aa32.43■■■□□ 2.78
GABRB3-209ENST00000555632 UNC13AQ9UPW8 1703 aa31.94■■■□□ 2.7
GABRB3-209ENST00000555632 RSF1Q96T23 1441 aaPredicted RBP31.9■■■□□ 2.7
GABRB3-209ENST00000555632 CECR2Q9BXF3 1484 aa31.87■■■□□ 2.69
GABRB3-209ENST00000555632 MROH2BQ7Z745 1585 aa31.66■■■□□ 2.66
GABRB3-209ENST00000555632 PABPN1Q86U42 306 aaKnown RBP eCLIP31.61■■■□□ 2.65
GABRB3-209ENST00000555632 BICRAQ9NZM4 1560 aa31.59■■■□□ 2.65
GABRB3-209ENST00000555632 CHIC1Q5VXU3 224 aa31.48■■■□□ 2.63
GABRB3-209ENST00000555632 WIZO95785 1651 aa31.44■■■□□ 2.62
GABRB3-209ENST00000555632 BAZ1AQ9NRL2 1556 aaPredicted RBP31.43■■■□□ 2.62
GABRB3-209ENST00000555632 SMARCA4P51532 1647 aa31.29■■■□□ 2.6
GABRB3-209ENST00000555632 TOP2AP11388 1531 aaKnown RBP30.97■■■□□ 2.55
GABRB3-209ENST00000555632 PEG3Q9GZU2 1588 aa30.81■■■□□ 2.52
GABRB3-209ENST00000555632 CCDC88BA6NC98 1476 aa30.78■■■□□ 2.52
GABRB3-209ENST00000555632 SMARCA2P51531 1590 aa30.76■■■□□ 2.51
GABRB3-209ENST00000555632 ATAD2BQ9ULI0 1458 aa30.72■■■□□ 2.51
GABRB3-209ENST00000555632 EIF4G1Q04637 1599 aaKnown RBP30.65■■■□□ 2.5
GABRB3-209ENST00000555632 TRIM41Q8WV44 630 aa30.65■■■□□ 2.5
GABRB3-209ENST00000555632 BAZ1BQ9UIG0 1483 aaKnown RBP30.55■■■□□ 2.48
GABRB3-209ENST00000555632 LOC105371045A0A1W2PR82 267 aa30.46■■■□□ 2.47
GABRB3-209ENST00000555632 ABCC8Q09428 1581 aa30.35■■■□□ 2.45
GABRB3-209ENST00000555632 NCAPD3P42695 1498 aa30.32■■■□□ 2.44
GABRB3-209ENST00000555632 FAM9AQ8IZU1 332 aaPredicted RBP30.29■■■□□ 2.44
GABRB3-209ENST00000555632 HMGXB3Q12766 1538 aa30.25■■■□□ 2.43
GABRB3-209ENST00000555632 CC2D2AQ9P2K1 1620 aa30.06■■■□□ 2.4
GABRB3-209ENST00000555632 EHMT2Q96KQ7 1210 aa30■■■□□ 2.39
GABRB3-209ENST00000555632 WRNQ14191 1432 aaPredicted RBP eCLIP29.98■■■□□ 2.39
GABRB3-209ENST00000555632 SYNJ1O43426 1573 aa29.89■■■□□ 2.38
GABRB3-209ENST00000555632 SOGA1O94964 1423 aa29.86■■■□□ 2.37
GABRB3-209ENST00000555632 CFTRP13569 1480 aa29.79■■■□□ 2.36
GABRB3-209ENST00000555632 RUSC2Q8N2Y8 1516 aa29.78■■■□□ 2.36
GABRB3-209ENST00000555632 TOP2BQ02880 1626 aa29.63■■■□□ 2.33
GABRB3-209ENST00000555632 CADPSQ9ULU8 1353 aa29.63■■■□□ 2.33
GABRB3-209ENST00000555632 CSRNP3Q8WYN3 585 aa29.59■■■□□ 2.33
GABRB3-209ENST00000555632 EEA1Q15075 1411 aa29.58■■■□□ 2.33
GABRB3-209ENST00000555632 BIVM-ERCC5R4GMW8 1640 aa29.56■■■□□ 2.32
GABRB3-209ENST00000555632 CUX1P39880 1505 aa29.55■■■□□ 2.32
GABRB3-209ENST00000555632 PRDM2Q13029 1718 aa29.54■■■□□ 2.32
GABRB3-209ENST00000555632 DNAJC5BQ9UF47 199 aa29.53■■■□□ 2.32
GABRB3-209ENST00000555632 PCGF6Q9BYE7 350 aa29.42■■■□□ 2.3
GABRB3-209ENST00000555632 NESP48681 1621 aa29.41■■■□□ 2.3
GABRB3-209ENST00000555632 FANCD2Q9BXW9 1451 aa29.32■■■□□ 2.28
GABRB3-209ENST00000555632 UBTFP17480 764 aaKnown RBP29.32■■■□□ 2.28
GABRB3-209ENST00000555632 GOLGA3Q08378 1498 aa29.31■■■□□ 2.28
GABRB3-209ENST00000555632 TNIKQ9UKE5 1360 aa29.3■■■□□ 2.28
GABRB3-209ENST00000555632 CEP162Q5TB80 1403 aa29.26■■■□□ 2.27
GABRB3-209ENST00000555632 CEP164Q9UPV0 1460 aa29.26■■■□□ 2.27
GABRB3-209ENST00000555632 KIF21BO75037 1637 aa29.25■■■□□ 2.27
GABRB3-209ENST00000555632 RAPGEF2Q9Y4G8 1499 aa29.2■■■□□ 2.26
GABRB3-209ENST00000555632 LAMC3Q9Y6N6 1575 aa29.18■■■□□ 2.26
GABRB3-209ENST00000555632 FGD5Q6ZNL6 1462 aa29.15■■■□□ 2.26
GABRB3-209ENST00000555632 TRIM26Q12899 539 aaPredicted RBP29.14■■■□□ 2.25
GABRB3-209ENST00000555632 KIF27Q86VH2 1401 aa29.13■■■□□ 2.25
GABRB3-209ENST00000555632 PPARGC1BQ86YN6 1023 aaKnown RBP29.08■■■□□ 2.25
GABRB3-209ENST00000555632 PRXQ9BXM0 1461 aa29.07■■■□□ 2.24
GABRB3-209ENST00000555632 CUX2O14529 1486 aa29.05■■■□□ 2.24
GABRB3-209ENST00000555632 DNMBPQ6XZF7 1577 aa29.05■■■□□ 2.24
GABRB3-209ENST00000555632 TOPBP1Q92547 1522 aa29.04■■■□□ 2.24
GABRB3-209ENST00000555632 PDS5BQ9NTI5 1447 aa28.98■■■□□ 2.23
GABRB3-209ENST00000555632 URB2Q14146 1524 aaKnown RBP28.97■■■□□ 2.23
GABRB3-209ENST00000555632 POLA1P09884 1462 aaPredicted RBP28.96■■■□□ 2.23
GABRB3-209ENST00000555632 RAD54L2Q9Y4B4 1467 aa28.96■■■□□ 2.23
GABRB3-209ENST00000555632 ERICH3Q5RHP9 1530 aa28.96■■■□□ 2.23
GABRB3-209ENST00000555632 KIF21AQ7Z4S6 1674 aa28.94■■■□□ 2.22
GABRB3-209ENST00000555632 RANGAP1P46060 587 aaPredicted RBP28.93■■■□□ 2.22
GABRB3-209ENST00000555632 IGF1RP08069 1367 aa28.93■■■□□ 2.22
GABRB3-209ENST00000555632 CLIP1P30622 1438 aa28.92■■■□□ 2.22
GABRB3-209ENST00000555632 ABCA10Q8WWZ4 1543 aa28.83■■■□□ 2.21
GABRB3-209ENST00000555632 TTBK1Q5TCY1 1321 aaPredicted RBP28.78■■■□□ 2.2
GABRB3-209ENST00000555632 HRCP23327 699 aa28.76■■■□□ 2.2
GABRB3-209ENST00000555632 CARMIL1Q5VZK9 1371 aa28.76■■■□□ 2.2
GABRB3-209ENST00000555632 WDR97A6NE52 1622 aa28.68■■■□□ 2.18
GABRB3-209ENST00000555632 VPS8Q8N3P4 1428 aa28.68■■■□□ 2.18
GABRB3-209ENST00000555632 TDRD9Q8NDG6 1382 aaKnown RBP28.66■■■□□ 2.18
GABRB3-209ENST00000555632 ARAP1Q96P48 1450 aa28.61■■■□□ 2.17
GABRB3-209ENST00000555632 MRC2Q9UBG0 1479 aa28.6■■■□□ 2.17
GABRB3-209ENST00000555632 ABCA5Q8WWZ7 1642 aa28.57■■■□□ 2.16
GABRB3-209ENST00000555632 TARBP1Q13395 1621 aaKnown RBP28.56■■■□□ 2.16
GABRB3-209ENST00000555632 ARHGAP35Q9NRY4 1499 aa28.54■■■□□ 2.16
GABRB3-209ENST00000555632 GAPVD1Q14C86 1478 aa28.53■■■□□ 2.16
GABRB3-209ENST00000555632 CUL7Q14999 1698 aa28.49■■■□□ 2.15
GABRB3-209ENST00000555632 WDR62O43379 1518 aa28.43■■■□□ 2.14
GABRB3-209ENST00000555632 ERCC6Q03468 1493 aa28.42■■■□□ 2.14
GABRB3-209ENST00000555632 APLP2Q06481 763 aa28.4■■■□□ 2.14
GABRB3-209ENST00000555632 AQRO60306 1485 aaKnown RBP eCLIP28.4■■■□□ 2.14
GABRB3-209ENST00000555632 ZNF608Q9ULD9 1512 aaPredicted RBP28.32■■■□□ 2.12
GABRB3-209ENST00000555632 P3H3Q8IVL6 736 aa28.3■■■□□ 2.12
GABRB3-209ENST00000555632 PBRM1Q86U86 1689 aa28.3■■■□□ 2.12
GABRB3-209ENST00000555632 THOC2Q8NI27 1593 aaKnown RBP28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms