RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 NISCHQ9Y2I1 1504 aa50.41■■■■■ 5.66
VTI1B-205ENST00000555543 CCDC180Q9P1Z9 1646 aa44.92■■■■■ 4.78
VTI1B-205ENST00000555543 ABCC9O60706 1549 aa44.22■■■■■ 4.67
VTI1B-205ENST00000555543 RB1CC1Q8TDY2 1594 aa42.38■■■■■ 4.37
VTI1B-205ENST00000555543 NACADO15069 1562 aa42.27■■■■■ 4.36
VTI1B-205ENST00000555543 DCAF8L2P0C7V8 631 aa42.15■■■■■ 4.34
VTI1B-205ENST00000555543 ZCCHC6Q5VYS8 1495 aaKnown RBP41.98■■■■■ 4.31
VTI1B-205ENST00000555543 MYO15BQ96JP2 1530 aa41.93■■■■■ 4.3
VTI1B-205ENST00000555543 DCAF1Q9Y4B6 1507 aa41.68■■■■■ 4.26
VTI1B-205ENST00000555543 UNC13AQ9UPW8 1703 aa41.49■■■■■ 4.23
VTI1B-205ENST00000555543 PABPN1Q86U42 306 aaKnown RBP eCLIP41.26■■■■■ 4.2
VTI1B-205ENST00000555543 BICRAQ9NZM4 1560 aa41.18■■■■■ 4.18
VTI1B-205ENST00000555543 SCRIBQ14160 1630 aa41.02■■■■■ 4.16
VTI1B-205ENST00000555543 DNAJC5BQ9UF47 199 aa40.82■■■■■ 4.13
VTI1B-205ENST00000555543 SHROOM4Q9ULL8 1493 aa40.64■■■■■ 4.1
VTI1B-205ENST00000555543 EIF4G1Q04637 1599 aaKnown RBP40.08■■■■■ 4.01
VTI1B-205ENST00000555543 CC2D2AQ9P2K1 1620 aa39.98■■■■□ 3.99
VTI1B-205ENST00000555543 CECR2Q9BXF3 1484 aa39.73■■■■□ 3.95
VTI1B-205ENST00000555543 SMARCA4P51532 1647 aa39.19■■■■□ 3.86
VTI1B-205ENST00000555543 BAZ1AQ9NRL2 1556 aaPredicted RBP39.08■■■■□ 3.85
VTI1B-205ENST00000555543 ATAD2BQ9ULI0 1458 aa39.02■■■■□ 3.84
VTI1B-205ENST00000555543 NCAPD3P42695 1498 aa39.01■■■■□ 3.84
VTI1B-205ENST00000555543 SMARCA2P51531 1590 aa38.93■■■■□ 3.82
VTI1B-205ENST00000555543 MROH2BQ7Z745 1585 aa38.89■■■■□ 3.82
VTI1B-205ENST00000555543 HMGXB3Q12766 1538 aa38.82■■■■□ 3.8
VTI1B-205ENST00000555543 PEG3Q9GZU2 1588 aa38.79■■■■□ 3.8
VTI1B-205ENST00000555543 BAZ1BQ9UIG0 1483 aaKnown RBP38.67■■■■□ 3.78
VTI1B-205ENST00000555543 WIZO95785 1651 aa38.46■■■■□ 3.75
VTI1B-205ENST00000555543 RSF1Q96T23 1441 aaPredicted RBP38.33■■■■□ 3.73
VTI1B-205ENST00000555543 NESP48681 1621 aa38.22■■■■□ 3.71
VTI1B-205ENST00000555543 ERCC6Q03468 1493 aa38.09■■■■□ 3.69
VTI1B-205ENST00000555543 LAMC3Q9Y6N6 1575 aa38.02■■■■□ 3.68
VTI1B-205ENST00000555543 TOP2AP11388 1531 aaKnown RBP38.01■■■■□ 3.67
VTI1B-205ENST00000555543 CADPSQ9ULU8 1353 aa37.85■■■■□ 3.65
VTI1B-205ENST00000555543 CUX2O14529 1486 aa37.77■■■■□ 3.64
VTI1B-205ENST00000555543 KIF21AQ7Z4S6 1674 aa37.75■■■■□ 3.63
VTI1B-205ENST00000555543 PDS5BQ9NTI5 1447 aa37.74■■■■□ 3.63
VTI1B-205ENST00000555543 THOC2Q8NI27 1593 aaKnown RBP37.69■■■■□ 3.62
VTI1B-205ENST00000555543 CFTRP13569 1480 aa37.6■■■■□ 3.61
VTI1B-205ENST00000555543 CCDC88BA6NC98 1476 aa37.56■■■■□ 3.6
VTI1B-205ENST00000555543 FANCD2Q9BXW9 1451 aa37.45■■■■□ 3.59
VTI1B-205ENST00000555543 MRC2Q9UBG0 1479 aa37.42■■■■□ 3.58
VTI1B-205ENST00000555543 CEP164Q9UPV0 1460 aa37.41■■■■□ 3.58
VTI1B-205ENST00000555543 WDR62O43379 1518 aa37.32■■■■□ 3.57
VTI1B-205ENST00000555543 PRDM2Q13029 1718 aa37.3■■■■□ 3.56
VTI1B-205ENST00000555543 SUPT5HO00267 1087 aaKnown RBP37.13■■■■□ 3.53
VTI1B-205ENST00000555543 URB2Q14146 1524 aaKnown RBP37.13■■■■□ 3.53
VTI1B-205ENST00000555543 DNAJC5Q9H3Z4 198 aa36.88■■■■□ 3.49
VTI1B-205ENST00000555543 TOPBP1Q92547 1522 aa36.84■■■■□ 3.49
VTI1B-205ENST00000555543 DNMBPQ6XZF7 1577 aa36.76■■■■□ 3.48
VTI1B-205ENST00000555543 ABCC8Q09428 1581 aa36.73■■■■□ 3.47
VTI1B-205ENST00000555543 IFT140Q96RY7 1462 aa36.62■■■■□ 3.45
VTI1B-205ENST00000555543 ZNF608Q9ULD9 1512 aaPredicted RBP36.54■■■■□ 3.44
VTI1B-205ENST00000555543 POLA1P09884 1462 aaPredicted RBP36.51■■■■□ 3.44
VTI1B-205ENST00000555543 CUX1P39880 1505 aa36.49■■■■□ 3.43
VTI1B-205ENST00000555543 TARBP1Q13395 1621 aaKnown RBP36.47■■■■□ 3.43
VTI1B-205ENST00000555543 FGD5Q6ZNL6 1462 aa36.39■■■■□ 3.42
VTI1B-205ENST00000555543 EIF4G3O43432 1585 aaKnown RBP36.39■■■■□ 3.42
VTI1B-205ENST00000555543 RAD54L2Q9Y4B4 1467 aa36.37■■■■□ 3.41
VTI1B-205ENST00000555543 SOGA1O94964 1423 aa36.31■■■■□ 3.4
VTI1B-205ENST00000555543 AQRO60306 1485 aaKnown RBP eCLIP36.29■■■■□ 3.4
VTI1B-205ENST00000555543 TDRD9Q8NDG6 1382 aaKnown RBP36.17■■■■□ 3.38
VTI1B-205ENST00000555543 WDR97A6NE52 1622 aa36.13■■■■□ 3.37
VTI1B-205ENST00000555543 WRNQ14191 1432 aaPredicted RBP eCLIP36.12■■■■□ 3.37
VTI1B-205ENST00000555543 SYNJ1O43426 1573 aa36.11■■■■□ 3.37
VTI1B-205ENST00000555543 OSCARQ8IYS5 282 aa36.1■■■■□ 3.37
VTI1B-205ENST00000555543 TOP2BQ02880 1626 aa36.09■■■■□ 3.37
VTI1B-205ENST00000555543 BIVM-ERCC5R4GMW8 1640 aa36.09■■■■□ 3.37
VTI1B-205ENST00000555543 ABCA10Q8WWZ4 1543 aa36.01■■■■□ 3.36
VTI1B-205ENST00000555543 CHD1O14646 1710 aa35.97■■■■□ 3.35
VTI1B-205ENST00000555543 SNAPC4Q5SXM2 1469 aa35.95■■■■□ 3.35
VTI1B-205ENST00000555543 GRIN2BQ13224 1484 aa35.92■■■■□ 3.34
VTI1B-205ENST00000555543 ABCA5Q8WWZ7 1642 aa35.92■■■■□ 3.34
VTI1B-205ENST00000555543 GAPVD1Q14C86 1478 aa35.9■■■■□ 3.34
VTI1B-205ENST00000555543 PBRM1Q86U86 1689 aa35.88■■■■□ 3.33
VTI1B-205ENST00000555543 MAGI1Q96QZ7 1491 aaPredicted RBP35.86■■■■□ 3.33
VTI1B-205ENST00000555543 FBLN2P98095 1184 aa35.83■■■■□ 3.33
VTI1B-205ENST00000555543 SYNJ2O15056 1496 aa35.73■■■■□ 3.31
VTI1B-205ENST00000555543 CHMP7Q8WUX9 453 aaPredicted RBP35.68■■■■□ 3.3
VTI1B-205ENST00000555543 RIMBP3CA6NJZ7 1639 aa35.66■■■■□ 3.3
VTI1B-205ENST00000555543 RIMBP3BA6NNM3 1639 aa35.66■■■■□ 3.3
VTI1B-205ENST00000555543 RIMBP3Q9UFD9 1639 aa35.66■■■■□ 3.3
VTI1B-205ENST00000555543 ARHGEF11O15085 1522 aa35.62■■■■□ 3.29
VTI1B-205ENST00000555543 ADAMTS12P58397 1594 aa35.6■■■■□ 3.29
VTI1B-205ENST00000555543 CLASP1Q7Z460 1538 aa35.58■■■■□ 3.29
VTI1B-205ENST00000555543 TRIM41Q8WV44 630 aa35.58■■■■□ 3.29
VTI1B-205ENST00000555543 ERICH3Q5RHP9 1530 aa35.56■■■■□ 3.28
VTI1B-205ENST00000555543 GRIN2AQ12879 1464 aa35.49■■■■□ 3.27
VTI1B-205ENST00000555543 FHAD1B1AJZ9 1412 aa35.47■■■■□ 3.27
VTI1B-205ENST00000555543 CEP170Q5SW79 1584 aa35.36■■■■□ 3.25
VTI1B-205ENST00000555543 KIF27Q86VH2 1401 aa35.35■■■■□ 3.25
VTI1B-205ENST00000555543 NUP160Q12769 1436 aa35.34■■■■□ 3.25
VTI1B-205ENST00000555543 ARAP1Q96P48 1450 aa35.34■■■■□ 3.25
VTI1B-205ENST00000555543 IGF1RP08069 1367 aa35.27■■■■□ 3.24
VTI1B-205ENST00000555543 CYB5RLQ6IPT4 315 aa35.24■■■■□ 3.23
VTI1B-205ENST00000555543 CUL7Q14999 1698 aa35.19■■■■□ 3.22
VTI1B-205ENST00000555543 SHROOM2Q13796 1616 aa35.12■■■■□ 3.21
VTI1B-205ENST00000555543 ERCC6L2Q5T890 1561 aa35.12■■■■□ 3.21
VTI1B-205ENST00000555543 RUSC2Q8N2Y8 1516 aa35.08■■■■□ 3.21
VTI1B-205ENST00000555543 CARMIL1Q5VZK9 1371 aa35.03■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 215.3 ms