RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 NISCHQ9Y2I1 1504 aa29.3■■■□□ 2.28
VRK1-204ENST00000555351 CCDC180Q9P1Z9 1646 aa26.24■■□□□ 1.79
VRK1-204ENST00000555351 ABCC9O60706 1549 aa25.77■■□□□ 1.72
VRK1-204ENST00000555351 RB1CC1Q8TDY2 1594 aa24.8■■□□□ 1.56
VRK1-204ENST00000555351 NACADO15069 1562 aa24.72■■□□□ 1.55
VRK1-204ENST00000555351 MYO15BQ96JP2 1530 aa24.56■■□□□ 1.52
VRK1-204ENST00000555351 DCAF8L2P0C7V8 631 aa24.42■■□□□ 1.5
VRK1-204ENST00000555351 ZCCHC6Q5VYS8 1495 aaKnown RBP24.35■■□□□ 1.49
VRK1-204ENST00000555351 DCAF1Q9Y4B6 1507 aa24.32■■□□□ 1.48
VRK1-204ENST00000555351 UNC13AQ9UPW8 1703 aa24.17■■□□□ 1.46
VRK1-204ENST00000555351 BICRAQ9NZM4 1560 aa24.02■■□□□ 1.44
VRK1-204ENST00000555351 PABPN1Q86U42 306 aaKnown RBP eCLIP23.99■■□□□ 1.43
VRK1-204ENST00000555351 SHROOM4Q9ULL8 1493 aa23.88■■□□□ 1.41
VRK1-204ENST00000555351 DNAJC5BQ9UF47 199 aa23.87■■□□□ 1.41
VRK1-204ENST00000555351 SCRIBQ14160 1630 aa23.77■■□□□ 1.4
VRK1-204ENST00000555351 EIF4G1Q04637 1599 aaKnown RBP23.4■■□□□ 1.34
VRK1-204ENST00000555351 CC2D2AQ9P2K1 1620 aa23.36■■□□□ 1.33
VRK1-204ENST00000555351 CECR2Q9BXF3 1484 aa23.24■■□□□ 1.31
VRK1-204ENST00000555351 NCAPD3P42695 1498 aa22.8■■□□□ 1.24
VRK1-204ENST00000555351 SMARCA4P51532 1647 aa22.79■■□□□ 1.24
VRK1-204ENST00000555351 BAZ1AQ9NRL2 1556 aaPredicted RBP22.75■■□□□ 1.23
VRK1-204ENST00000555351 SMARCA2P51531 1590 aa22.73■■□□□ 1.23
VRK1-204ENST00000555351 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
VRK1-204ENST00000555351 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
VRK1-204ENST00000555351 PEG3Q9GZU2 1588 aa22.63■■□□□ 1.21
VRK1-204ENST00000555351 MROH2BQ7Z745 1585 aa22.52■■□□□ 1.2
VRK1-204ENST00000555351 BAZ1BQ9UIG0 1483 aaKnown RBP22.52■■□□□ 1.2
VRK1-204ENST00000555351 ERCC6Q03468 1493 aa22.27■■□□□ 1.16
VRK1-204ENST00000555351 WIZO95785 1651 aa22.25■■□□□ 1.15
VRK1-204ENST00000555351 LAMC3Q9Y6N6 1575 aa22.25■■□□□ 1.15
VRK1-204ENST00000555351 CUX2O14529 1486 aa22.22■■□□□ 1.15
VRK1-204ENST00000555351 NESP48681 1621 aa22.22■■□□□ 1.15
VRK1-204ENST00000555351 RSF1Q96T23 1441 aaPredicted RBP22.19■■□□□ 1.14
VRK1-204ENST00000555351 PDS5BQ9NTI5 1447 aa22.09■■□□□ 1.13
VRK1-204ENST00000555351 CADPSQ9ULU8 1353 aa22.09■■□□□ 1.13
VRK1-204ENST00000555351 TOP2AP11388 1531 aaKnown RBP22.06■■□□□ 1.12
VRK1-204ENST00000555351 THOC2Q8NI27 1593 aaKnown RBP22.02■■□□□ 1.12
VRK1-204ENST00000555351 KIF21AQ7Z4S6 1674 aa21.99■■□□□ 1.11
VRK1-204ENST00000555351 CFTRP13569 1480 aa21.91■■□□□ 1.1
VRK1-204ENST00000555351 MRC2Q9UBG0 1479 aa21.85■■□□□ 1.09
VRK1-204ENST00000555351 CEP164Q9UPV0 1460 aa21.83■■□□□ 1.08
VRK1-204ENST00000555351 WDR62O43379 1518 aa21.81■■□□□ 1.08
VRK1-204ENST00000555351 DNAJC5Q9H3Z4 198 aa21.81■■□□□ 1.08
VRK1-204ENST00000555351 FANCD2Q9BXW9 1451 aa21.81■■□□□ 1.08
VRK1-204ENST00000555351 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.07
VRK1-204ENST00000555351 PRDM2Q13029 1718 aa21.75■■□□□ 1.07
VRK1-204ENST00000555351 URB2Q14146 1524 aaKnown RBP21.6■■□□□ 1.05
VRK1-204ENST00000555351 ABCC8Q09428 1581 aa21.51■■□□□ 1.03
VRK1-204ENST00000555351 TOPBP1Q92547 1522 aa21.44■■□□□ 1.02
VRK1-204ENST00000555351 DNMBPQ6XZF7 1577 aa21.41■■□□□ 1.02
VRK1-204ENST00000555351 IFT140Q96RY7 1462 aa21.39■■□□□ 1.02
VRK1-204ENST00000555351 SUPT5HO00267 1087 aaKnown RBP21.29■■□□□ 1
VRK1-204ENST00000555351 TARBP1Q13395 1621 aaKnown RBP21.25■□□□□ 0.99
VRK1-204ENST00000555351 ZNF608Q9ULD9 1512 aaPredicted RBP21.24■□□□□ 0.99
VRK1-204ENST00000555351 POLA1P09884 1462 aaPredicted RBP21.23■□□□□ 0.99
VRK1-204ENST00000555351 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
VRK1-204ENST00000555351 OSCARQ8IYS5 282 aa21.19■□□□□ 0.98
VRK1-204ENST00000555351 WDR97A6NE52 1622 aa21.16■□□□□ 0.98
VRK1-204ENST00000555351 CUX1P39880 1505 aa21.16■□□□□ 0.98
VRK1-204ENST00000555351 SOGA1O94964 1423 aa21.13■□□□□ 0.97
VRK1-204ENST00000555351 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
VRK1-204ENST00000555351 AQRO60306 1485 aaKnown RBP eCLIP21.09■□□□□ 0.97
VRK1-204ENST00000555351 RAD54L2Q9Y4B4 1467 aa21.08■□□□□ 0.97
VRK1-204ENST00000555351 TDRD9Q8NDG6 1382 aaKnown RBP21■□□□□ 0.95
VRK1-204ENST00000555351 CHD1O14646 1710 aa20.96■□□□□ 0.95
VRK1-204ENST00000555351 BIVM-ERCC5R4GMW8 1640 aa20.96■□□□□ 0.95
VRK1-204ENST00000555351 GRIN2BQ13224 1484 aa20.95■□□□□ 0.94
VRK1-204ENST00000555351 ABCA10Q8WWZ4 1543 aa20.95■□□□□ 0.94
VRK1-204ENST00000555351 TOP2BQ02880 1626 aa20.95■□□□□ 0.94
VRK1-204ENST00000555351 MAGI1Q96QZ7 1491 aaPredicted RBP20.94■□□□□ 0.94
VRK1-204ENST00000555351 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
VRK1-204ENST00000555351 SNAPC4Q5SXM2 1469 aa20.91■□□□□ 0.94
VRK1-204ENST00000555351 GAPVD1Q14C86 1478 aa20.9■□□□□ 0.94
VRK1-204ENST00000555351 ABCA5Q8WWZ7 1642 aa20.89■□□□□ 0.94
VRK1-204ENST00000555351 PBRM1Q86U86 1689 aa20.87■□□□□ 0.93
VRK1-204ENST00000555351 RIMBP3CA6NJZ7 1639 aa20.87■□□□□ 0.93
VRK1-204ENST00000555351 RIMBP3BA6NNM3 1639 aa20.87■□□□□ 0.93
VRK1-204ENST00000555351 RIMBP3Q9UFD9 1639 aa20.87■□□□□ 0.93
VRK1-204ENST00000555351 SYNJ1O43426 1573 aa20.87■□□□□ 0.93
VRK1-204ENST00000555351 SYNJ2O15056 1496 aa20.85■□□□□ 0.93
VRK1-204ENST00000555351 ARHGEF11O15085 1522 aa20.84■□□□□ 0.93
VRK1-204ENST00000555351 FBLN2P98095 1184 aa20.84■□□□□ 0.93
VRK1-204ENST00000555351 TRIM41Q8WV44 630 aa20.84■□□□□ 0.93
VRK1-204ENST00000555351 CHMP7Q8WUX9 453 aaPredicted RBP20.81■□□□□ 0.92
VRK1-204ENST00000555351 CLASP1Q7Z460 1538 aa20.78■□□□□ 0.92
VRK1-204ENST00000555351 ERICH3Q5RHP9 1530 aa20.73■□□□□ 0.91
VRK1-204ENST00000555351 ADAMTS12P58397 1594 aa20.69■□□□□ 0.9
VRK1-204ENST00000555351 FHAD1B1AJZ9 1412 aa20.67■□□□□ 0.9
VRK1-204ENST00000555351 GRIN2AQ12879 1464 aa20.67■□□□□ 0.9
VRK1-204ENST00000555351 ARAP1Q96P48 1450 aa20.64■□□□□ 0.89
VRK1-204ENST00000555351 CYB5RLQ6IPT4 315 aa20.61■□□□□ 0.89
VRK1-204ENST00000555351 NUP160Q12769 1436 aa20.61■□□□□ 0.89
VRK1-204ENST00000555351 CEP170Q5SW79 1584 aa20.55■□□□□ 0.88
VRK1-204ENST00000555351 KIF27Q86VH2 1401 aa20.53■□□□□ 0.88
VRK1-204ENST00000555351 SHROOM2Q13796 1616 aa20.5■□□□□ 0.87
VRK1-204ENST00000555351 CUL7Q14999 1698 aa20.48■□□□□ 0.87
VRK1-204ENST00000555351 IGF1RP08069 1367 aa20.46■□□□□ 0.87
VRK1-204ENST00000555351 RUSC2Q8N2Y8 1516 aa20.4■□□□□ 0.86
VRK1-204ENST00000555351 ERCC6L2Q5T890 1561 aa20.38■□□□□ 0.85
VRK1-204ENST00000555351 JPH4Q96JJ6 628 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms