RNA–Protein interactions for RNA: ENST00000555241.5

SYNE2-218, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-218ENST00000555241 NISCHQ9Y2I1 1504 aa53.13■■■■■ 6.1
SYNE2-218ENST00000555241 CCDC180Q9P1Z9 1646 aa47.53■■■■■ 5.2
SYNE2-218ENST00000555241 ABCC9O60706 1549 aa46.75■■■■■ 5.07
SYNE2-218ENST00000555241 RB1CC1Q8TDY2 1594 aa44.88■■■■■ 4.78
SYNE2-218ENST00000555241 NACADO15069 1562 aa44.73■■■■■ 4.75
SYNE2-218ENST00000555241 DCAF8L2P0C7V8 631 aa44.44■■■■■ 4.7
SYNE2-218ENST00000555241 MYO15BQ96JP2 1530 aa44.33■■■■■ 4.69
SYNE2-218ENST00000555241 ZCCHC6Q5VYS8 1495 aaKnown RBP44.19■■■■■ 4.66
SYNE2-218ENST00000555241 DCAF1Q9Y4B6 1507 aa43.99■■■■■ 4.63
SYNE2-218ENST00000555241 UNC13AQ9UPW8 1703 aa43.96■■■■■ 4.63
SYNE2-218ENST00000555241 PABPN1Q86U42 306 aaKnown RBP eCLIP43.55■■■■■ 4.56
SYNE2-218ENST00000555241 BICRAQ9NZM4 1560 aa43.52■■■■■ 4.56
SYNE2-218ENST00000555241 SCRIBQ14160 1630 aa43.24■■■■■ 4.51
SYNE2-218ENST00000555241 DNAJC5BQ9UF47 199 aa43.22■■■■■ 4.51
SYNE2-218ENST00000555241 SHROOM4Q9ULL8 1493 aa43.06■■■■■ 4.48
SYNE2-218ENST00000555241 EIF4G1Q04637 1599 aaKnown RBP42.4■■■■■ 4.38
SYNE2-218ENST00000555241 CC2D2AQ9P2K1 1620 aa42.34■■■■■ 4.37
SYNE2-218ENST00000555241 CECR2Q9BXF3 1484 aa42.07■■■■■ 4.33
SYNE2-218ENST00000555241 SMARCA4P51532 1647 aa41.36■■■■■ 4.21
SYNE2-218ENST00000555241 BAZ1AQ9NRL2 1556 aaPredicted RBP41.24■■■■■ 4.19
SYNE2-218ENST00000555241 NCAPD3P42695 1498 aa41.22■■■■■ 4.19
SYNE2-218ENST00000555241 ATAD2BQ9ULI0 1458 aa41.18■■■■■ 4.18
SYNE2-218ENST00000555241 SMARCA2P51531 1590 aa41.16■■■■■ 4.18
SYNE2-218ENST00000555241 HMGXB3Q12766 1538 aa41.03■■■■■ 4.16
SYNE2-218ENST00000555241 PEG3Q9GZU2 1588 aa40.98■■■■■ 4.15
SYNE2-218ENST00000555241 MROH2BQ7Z745 1585 aa40.92■■■■■ 4.14
SYNE2-218ENST00000555241 BAZ1BQ9UIG0 1483 aaKnown RBP40.83■■■■■ 4.13
SYNE2-218ENST00000555241 WIZO95785 1651 aa40.51■■■■■ 4.08
SYNE2-218ENST00000555241 ERCC6Q03468 1493 aa40.34■■■■■ 4.05
SYNE2-218ENST00000555241 NESP48681 1621 aa40.34■■■■■ 4.05
SYNE2-218ENST00000555241 RSF1Q96T23 1441 aaPredicted RBP40.28■■■■■ 4.04
SYNE2-218ENST00000555241 LAMC3Q9Y6N6 1575 aa40.27■■■■■ 4.04
SYNE2-218ENST00000555241 CUX2O14529 1486 aa40.11■■■■■ 4.01
SYNE2-218ENST00000555241 TOP2AP11388 1531 aaKnown RBP40.05■■■■■ 4
SYNE2-218ENST00000555241 CADPSQ9ULU8 1353 aa39.97■■■■□ 3.99
SYNE2-218ENST00000555241 KIF21AQ7Z4S6 1674 aa39.96■■■■□ 3.99
SYNE2-218ENST00000555241 PDS5BQ9NTI5 1447 aa39.94■■■■□ 3.98
SYNE2-218ENST00000555241 THOC2Q8NI27 1593 aaKnown RBP39.9■■■■□ 3.98
SYNE2-218ENST00000555241 CFTRP13569 1480 aa39.68■■■■□ 3.94
SYNE2-218ENST00000555241 MRC2Q9UBG0 1479 aa39.57■■■■□ 3.93
SYNE2-218ENST00000555241 CEP164Q9UPV0 1460 aa39.55■■■■□ 3.92
SYNE2-218ENST00000555241 FANCD2Q9BXW9 1451 aa39.54■■■■□ 3.92
SYNE2-218ENST00000555241 CCDC88BA6NC98 1476 aa39.53■■■■□ 3.92
SYNE2-218ENST00000555241 PRDM2Q13029 1718 aa39.53■■■■□ 3.92
SYNE2-218ENST00000555241 WDR62O43379 1518 aa39.49■■■■□ 3.91
SYNE2-218ENST00000555241 DNAJC5Q9H3Z4 198 aa39.28■■■■□ 3.88
SYNE2-218ENST00000555241 URB2Q14146 1524 aaKnown RBP39.17■■■■□ 3.86
SYNE2-218ENST00000555241 SUPT5HO00267 1087 aaKnown RBP38.88■■■■□ 3.81
SYNE2-218ENST00000555241 TOPBP1Q92547 1522 aa38.88■■■■□ 3.81
SYNE2-218ENST00000555241 ABCC8Q09428 1581 aa38.87■■■■□ 3.81
SYNE2-218ENST00000555241 DNMBPQ6XZF7 1577 aa38.82■■■■□ 3.81
SYNE2-218ENST00000555241 IFT140Q96RY7 1462 aa38.73■■■■□ 3.79
SYNE2-218ENST00000555241 ZNF608Q9ULD9 1512 aaPredicted RBP38.56■■■■□ 3.76
SYNE2-218ENST00000555241 TARBP1Q13395 1621 aaKnown RBP38.52■■■■□ 3.76
SYNE2-218ENST00000555241 POLA1P09884 1462 aaPredicted RBP38.51■■■■□ 3.76
SYNE2-218ENST00000555241 EIF4G3O43432 1585 aaKnown RBP38.47■■■■□ 3.75
SYNE2-218ENST00000555241 CUX1P39880 1505 aa38.43■■■■□ 3.74
SYNE2-218ENST00000555241 FGD5Q6ZNL6 1462 aa38.36■■■■□ 3.73
SYNE2-218ENST00000555241 RAD54L2Q9Y4B4 1467 aa38.32■■■■□ 3.72
SYNE2-218ENST00000555241 SOGA1O94964 1423 aa38.31■■■■□ 3.72
SYNE2-218ENST00000555241 OSCARQ8IYS5 282 aa38.3■■■■□ 3.72
SYNE2-218ENST00000555241 AQRO60306 1485 aaKnown RBP eCLIP38.28■■■■□ 3.72
SYNE2-218ENST00000555241 WDR97A6NE52 1622 aa38.24■■■■□ 3.71
SYNE2-218ENST00000555241 TDRD9Q8NDG6 1382 aaKnown RBP38.12■■■■□ 3.69
SYNE2-218ENST00000555241 CHD1O14646 1710 aa38.11■■■■□ 3.69
SYNE2-218ENST00000555241 BIVM-ERCC5R4GMW8 1640 aa38.06■■■■□ 3.68
SYNE2-218ENST00000555241 TOP2BQ02880 1626 aa38.03■■■■□ 3.68
SYNE2-218ENST00000555241 WRNQ14191 1432 aaPredicted RBP eCLIP38.01■■■■□ 3.68
SYNE2-218ENST00000555241 ABCA10Q8WWZ4 1543 aa37.98■■■■□ 3.67
SYNE2-218ENST00000555241 SYNJ1O43426 1573 aa37.97■■■■□ 3.67
SYNE2-218ENST00000555241 SNAPC4Q5SXM2 1469 aa37.95■■■■□ 3.67
SYNE2-218ENST00000555241 PBRM1Q86U86 1689 aa37.95■■■■□ 3.66
SYNE2-218ENST00000555241 GRIN2BQ13224 1484 aa37.94■■■■□ 3.66
SYNE2-218ENST00000555241 MAGI1Q96QZ7 1491 aaPredicted RBP37.91■■■■□ 3.66
SYNE2-218ENST00000555241 ABCA5Q8WWZ7 1642 aa37.91■■■■□ 3.66
SYNE2-218ENST00000555241 GAPVD1Q14C86 1478 aa37.9■■■■□ 3.66
SYNE2-218ENST00000555241 FBLN2P98095 1184 aa37.86■■■■□ 3.65
SYNE2-218ENST00000555241 RIMBP3CA6NJZ7 1639 aa37.82■■■■□ 3.64
SYNE2-218ENST00000555241 RIMBP3BA6NNM3 1639 aa37.82■■■■□ 3.64
SYNE2-218ENST00000555241 RIMBP3Q9UFD9 1639 aa37.82■■■■□ 3.64
SYNE2-218ENST00000555241 TRIM41Q8WV44 630 aa37.78■■■■□ 3.64
SYNE2-218ENST00000555241 SYNJ2O15056 1496 aa37.76■■■■□ 3.63
SYNE2-218ENST00000555241 ARHGEF11O15085 1522 aa37.74■■■■□ 3.63
SYNE2-218ENST00000555241 CHMP7Q8WUX9 453 aaPredicted RBP37.72■■■■□ 3.63
SYNE2-218ENST00000555241 CLASP1Q7Z460 1538 aa37.63■■■■□ 3.61
SYNE2-218ENST00000555241 ADAMTS12P58397 1594 aa37.57■■■■□ 3.6
SYNE2-218ENST00000555241 ERICH3Q5RHP9 1530 aa37.54■■■■□ 3.6
SYNE2-218ENST00000555241 GRIN2AQ12879 1464 aa37.47■■■■□ 3.59
SYNE2-218ENST00000555241 FHAD1B1AJZ9 1412 aa37.44■■■■□ 3.58
SYNE2-218ENST00000555241 ARAP1Q96P48 1450 aa37.39■■■■□ 3.58
SYNE2-218ENST00000555241 CYB5RLQ6IPT4 315 aa37.33■■■■□ 3.57
SYNE2-218ENST00000555241 CEP170Q5SW79 1584 aa37.31■■■■□ 3.56
SYNE2-218ENST00000555241 NUP160Q12769 1436 aa37.31■■■■□ 3.56
SYNE2-218ENST00000555241 KIF27Q86VH2 1401 aa37.25■■■■□ 3.55
SYNE2-218ENST00000555241 CUL7Q14999 1698 aa37.16■■■■□ 3.54
SYNE2-218ENST00000555241 SHROOM2Q13796 1616 aa37.14■■■■□ 3.54
SYNE2-218ENST00000555241 IGF1RP08069 1367 aa37.11■■■■□ 3.53
SYNE2-218ENST00000555241 ERCC6L2Q5T890 1561 aa37.04■■■■□ 3.52
SYNE2-218ENST00000555241 RUSC2Q8N2Y8 1516 aa37.03■■■■□ 3.52
SYNE2-218ENST00000555241 CARMIL1Q5VZK9 1371 aa36.9■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms