RNA–Protein interactions for RNA: ENST00000555231.5

XRCC3-212, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 3

Gene XRCC3, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-212ENST00000555231 NISCHQ9Y2I1 1504 aa33.23■■■□□ 2.91
XRCC3-212ENST00000555231 ABCC9O60706 1549 aa30.19■■■□□ 2.42
XRCC3-212ENST00000555231 CCDC180Q9P1Z9 1646 aa29.91■■■□□ 2.38
XRCC3-212ENST00000555231 RB1CC1Q8TDY2 1594 aa28.58■■■□□ 2.17
XRCC3-212ENST00000555231 DNAJC5BQ9UF47 199 aa28.51■■■□□ 2.15
XRCC3-212ENST00000555231 NACADO15069 1562 aa28.31■■■□□ 2.12
XRCC3-212ENST00000555231 DCAF8L2P0C7V8 631 aa28.22■■■□□ 2.11
XRCC3-212ENST00000555231 PABPN1Q86U42 306 aaKnown RBP eCLIP28.08■■■□□ 2.09
XRCC3-212ENST00000555231 UNC13AQ9UPW8 1703 aa28.02■■■□□ 2.08
XRCC3-212ENST00000555231 BICRAQ9NZM4 1560 aa27.78■■■□□ 2.04
XRCC3-212ENST00000555231 MYO15BQ96JP2 1530 aa27.78■■■□□ 2.04
XRCC3-212ENST00000555231 ZCCHC6Q5VYS8 1495 aaKnown RBP27.49■■□□□ 1.99
XRCC3-212ENST00000555231 DCAF1Q9Y4B6 1507 aa27.37■■□□□ 1.97
XRCC3-212ENST00000555231 SCRIBQ14160 1630 aa27.3■■□□□ 1.96
XRCC3-212ENST00000555231 SHROOM4Q9ULL8 1493 aa27.27■■□□□ 1.96
XRCC3-212ENST00000555231 CC2D2AQ9P2K1 1620 aa27.24■■□□□ 1.95
XRCC3-212ENST00000555231 CECR2Q9BXF3 1484 aa27.18■■□□□ 1.94
XRCC3-212ENST00000555231 EIF4G1Q04637 1599 aaKnown RBP27.11■■□□□ 1.93
XRCC3-212ENST00000555231 DNAJC5Q9H3Z4 198 aa26.28■■□□□ 1.8
XRCC3-212ENST00000555231 NCAPD3P42695 1498 aa26.13■■□□□ 1.77
XRCC3-212ENST00000555231 ATAD2BQ9ULI0 1458 aa26.05■■□□□ 1.76
XRCC3-212ENST00000555231 ERCC6Q03468 1493 aa26.04■■□□□ 1.76
XRCC3-212ENST00000555231 CUX2O14529 1486 aa26.03■■□□□ 1.76
XRCC3-212ENST00000555231 SMARCA4P51532 1647 aa25.99■■□□□ 1.75
XRCC3-212ENST00000555231 SMARCA2P51531 1590 aa25.95■■□□□ 1.74
XRCC3-212ENST00000555231 HMGXB3Q12766 1538 aa25.92■■□□□ 1.74
XRCC3-212ENST00000555231 NESP48681 1621 aa25.88■■□□□ 1.73
XRCC3-212ENST00000555231 BAZ1BQ9UIG0 1483 aaKnown RBP25.79■■□□□ 1.72
XRCC3-212ENST00000555231 BAZ1AQ9NRL2 1556 aaPredicted RBP25.79■■□□□ 1.72
XRCC3-212ENST00000555231 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
XRCC3-212ENST00000555231 MROH2BQ7Z745 1585 aa25.64■■□□□ 1.69
XRCC3-212ENST00000555231 THOC2Q8NI27 1593 aaKnown RBP25.63■■□□□ 1.69
XRCC3-212ENST00000555231 LAMC3Q9Y6N6 1575 aa25.6■■□□□ 1.69
XRCC3-212ENST00000555231 KIF21AQ7Z4S6 1674 aa25.55■■□□□ 1.68
XRCC3-212ENST00000555231 PDS5BQ9NTI5 1447 aa25.44■■□□□ 1.66
XRCC3-212ENST00000555231 WIZO95785 1651 aa25.35■■□□□ 1.65
XRCC3-212ENST00000555231 CADPSQ9ULU8 1353 aa25.33■■□□□ 1.65
XRCC3-212ENST00000555231 MRC2Q9UBG0 1479 aa25.26■■□□□ 1.63
XRCC3-212ENST00000555231 WDR62O43379 1518 aa25.2■■□□□ 1.62
XRCC3-212ENST00000555231 TRIM41Q8WV44 630 aa25.13■■□□□ 1.61
XRCC3-212ENST00000555231 CEP164Q9UPV0 1460 aa25.12■■□□□ 1.61
XRCC3-212ENST00000555231 FANCD2Q9BXW9 1451 aa25.08■■□□□ 1.6
XRCC3-212ENST00000555231 CFTRP13569 1480 aa25■■□□□ 1.59
XRCC3-212ENST00000555231 RSF1Q96T23 1441 aaPredicted RBP24.99■■□□□ 1.59
XRCC3-212ENST00000555231 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
XRCC3-212ENST00000555231 URB2Q14146 1524 aaKnown RBP24.9■■□□□ 1.58
XRCC3-212ENST00000555231 OSCARQ8IYS5 282 aa24.82■■□□□ 1.56
XRCC3-212ENST00000555231 PRDM2Q13029 1718 aa24.8■■□□□ 1.56
XRCC3-212ENST00000555231 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.54
XRCC3-212ENST00000555231 ZNF608Q9ULD9 1512 aaPredicted RBP24.64■■□□□ 1.53
XRCC3-212ENST00000555231 IFT140Q96RY7 1462 aa24.61■■□□□ 1.53
XRCC3-212ENST00000555231 TOPBP1Q92547 1522 aa24.59■■□□□ 1.53
XRCC3-212ENST00000555231 RIMBP3CA6NJZ7 1639 aa24.58■■□□□ 1.53
XRCC3-212ENST00000555231 RIMBP3BA6NNM3 1639 aa24.58■■□□□ 1.53
XRCC3-212ENST00000555231 RIMBP3Q9UFD9 1639 aa24.58■■□□□ 1.53
XRCC3-212ENST00000555231 EIF4G3O43432 1585 aaKnown RBP24.49■■□□□ 1.51
XRCC3-212ENST00000555231 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
XRCC3-212ENST00000555231 DNMBPQ6XZF7 1577 aa24.46■■□□□ 1.51
XRCC3-212ENST00000555231 ARHGEF11O15085 1522 aa24.45■■□□□ 1.51
XRCC3-212ENST00000555231 CHD1O14646 1710 aa24.39■■□□□ 1.5
XRCC3-212ENST00000555231 TARBP1Q13395 1621 aaKnown RBP24.39■■□□□ 1.49
XRCC3-212ENST00000555231 AQRO60306 1485 aaKnown RBP eCLIP24.38■■□□□ 1.496e-6■■■■□ 25.1
XRCC3-212ENST00000555231 POLA1P09884 1462 aaPredicted RBP24.32■■□□□ 1.48
XRCC3-212ENST00000555231 CYB5RLQ6IPT4 315 aa24.31■■□□□ 1.48
XRCC3-212ENST00000555231 FBLN2P98095 1184 aa24.29■■□□□ 1.48
XRCC3-212ENST00000555231 RAD54L2Q9Y4B4 1467 aa24.27■■□□□ 1.48
XRCC3-212ENST00000555231 ARAP1Q96P48 1450 aa24.2■■□□□ 1.47
XRCC3-212ENST00000555231 SOGA1O94964 1423 aa24.2■■□□□ 1.46
XRCC3-212ENST00000555231 TDRD9Q8NDG6 1382 aaKnown RBP24.2■■□□□ 1.46
XRCC3-212ENST00000555231 FGD5Q6ZNL6 1462 aa24.15■■□□□ 1.46
XRCC3-212ENST00000555231 SNAPC4Q5SXM2 1469 aa24.13■■□□□ 1.45
XRCC3-212ENST00000555231 TRHP20396 242 aaPredicted RBP24.12■■□□□ 1.45
XRCC3-212ENST00000555231 CUX1P39880 1505 aa24.09■■□□□ 1.45
XRCC3-212ENST00000555231 WDR97A6NE52 1622 aa24.06■■□□□ 1.44
XRCC3-212ENST00000555231 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
XRCC3-212ENST00000555231 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
XRCC3-212ENST00000555231 SYNJ1O43426 1573 aa24.01■■□□□ 1.43
XRCC3-212ENST00000555231 MAGI1Q96QZ7 1491 aaPredicted RBP24■■□□□ 1.43
XRCC3-212ENST00000555231 GRIN2BQ13224 1484 aa24■■□□□ 1.43
XRCC3-212ENST00000555231 PBRM1Q86U86 1689 aa23.95■■□□□ 1.43
XRCC3-212ENST00000555231 SYNJ2O15056 1496 aa23.94■■□□□ 1.42
XRCC3-212ENST00000555231 GAPVD1Q14C86 1478 aa23.89■■□□□ 1.42
XRCC3-212ENST00000555231 ABCA5Q8WWZ7 1642 aa23.84■■□□□ 1.41
XRCC3-212ENST00000555231 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
XRCC3-212ENST00000555231 SUPT5HO00267 1087 aaKnown RBP23.8■■□□□ 1.4
XRCC3-212ENST00000555231 ERCC6L2Q5T890 1561 aa23.71■■□□□ 1.39
XRCC3-212ENST00000555231 GRIN2AQ12879 1464 aa23.7■■□□□ 1.38
XRCC3-212ENST00000555231 ADAMTS12P58397 1594 aa23.68■■□□□ 1.38
XRCC3-212ENST00000555231 WRNQ14191 1432 aaPredicted RBP eCLIP23.67■■□□□ 1.38
XRCC3-212ENST00000555231 CEP170Q5SW79 1584 aa23.66■■□□□ 1.38
XRCC3-212ENST00000555231 BIVM-ERCC5R4GMW8 1640 aa23.65■■□□□ 1.38
XRCC3-212ENST00000555231 TOP2BQ02880 1626 aa23.62■■□□□ 1.37
XRCC3-212ENST00000555231 NUP160Q12769 1436 aa23.61■■□□□ 1.37
XRCC3-212ENST00000555231 FHAD1B1AJZ9 1412 aa23.57■■□□□ 1.36
XRCC3-212ENST00000555231 AEBP2Q6ZN18 517 aaPredicted RBP23.56■■□□□ 1.36
XRCC3-212ENST00000555231 SHROOM2Q13796 1616 aa23.55■■□□□ 1.36
XRCC3-212ENST00000555231 ERICH3Q5RHP9 1530 aa23.51■■□□□ 1.35
XRCC3-212ENST00000555231 PRG4Q92954 1404 aaPredicted RBP23.43■■□□□ 1.34
XRCC3-212ENST00000555231 KIF13AQ9H1H9 1805 aa23.41■■□□□ 1.34
XRCC3-212ENST00000555231 JPH4Q96JJ6 628 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms