RNA–Protein interactions for RNA: ENST00000555185.5

PRKCH-213, Transcript of protein kinase C eta, humanhuman

TSL 3

Gene PRKCH, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-213ENST00000555185 NISCHQ9Y2I1 1504 aa22.63■■□□□ 1.21
PRKCH-213ENST00000555185 ABCC9O60706 1549 aa21.19■□□□□ 0.98
PRKCH-213ENST00000555185 CCDC180Q9P1Z9 1646 aa20.52■□□□□ 0.88
PRKCH-213ENST00000555185 DNAJC5BQ9UF47 199 aa20.41■□□□□ 0.86
PRKCH-213ENST00000555185 RB1CC1Q8TDY2 1594 aa19.81■□□□□ 0.76
PRKCH-213ENST00000555185 PABPN1Q86U42 306 aaKnown RBP eCLIP19.67■□□□□ 0.74
PRKCH-213ENST00000555185 NACADO15069 1562 aa19.52■□□□□ 0.71
PRKCH-213ENST00000555185 UNC13AQ9UPW8 1703 aa19.48■□□□□ 0.71
PRKCH-213ENST00000555185 DCAF8L2P0C7V8 631 aa19.46■□□□□ 0.71
PRKCH-213ENST00000555185 BICRAQ9NZM4 1560 aa19.32■□□□□ 0.68
PRKCH-213ENST00000555185 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
PRKCH-213ENST00000555185 CC2D2AQ9P2K1 1620 aa19.08■□□□□ 0.65
PRKCH-213ENST00000555185 DNAJC5Q9H3Z4 198 aa19.04■□□□□ 0.64
PRKCH-213ENST00000555185 MYO15BQ96JP2 1530 aa18.99■□□□□ 0.63
PRKCH-213ENST00000555185 EIF4G1Q04637 1599 aaKnown RBP18.88■□□□□ 0.61
PRKCH-213ENST00000555185 SHROOM4Q9ULL8 1493 aa18.83■□□□□ 0.6
PRKCH-213ENST00000555185 SCRIBQ14160 1630 aa18.79■□□□□ 0.6
PRKCH-213ENST00000555185 ZCCHC6Q5VYS8 1495 aaKnown RBP18.64■□□□□ 0.57
PRKCH-213ENST00000555185 DCAF1Q9Y4B6 1507 aa18.57■□□□□ 0.56
PRKCH-213ENST00000555185 CUX2O14529 1486 aa18.37■□□□□ 0.53
PRKCH-213ENST00000555185 ERCC6Q03468 1493 aa18.28■□□□□ 0.52
PRKCH-213ENST00000555185 TRIM41Q8WV44 630 aa18.09■□□□□ 0.49
PRKCH-213ENST00000555185 NESP48681 1621 aa18.06■□□□□ 0.48
PRKCH-213ENST00000555185 NCAPD3P42695 1498 aa18.03■□□□□ 0.48
PRKCH-213ENST00000555185 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
PRKCH-213ENST00000555185 THOC2Q8NI27 1593 aaKnown RBP17.94■□□□□ 0.46
PRKCH-213ENST00000555185 SMARCA2P51531 1590 aa17.86■□□□□ 0.45
PRKCH-213ENST00000555185 HMGXB3Q12766 1538 aa17.84■□□□□ 0.45
PRKCH-213ENST00000555185 SMARCA4P51532 1647 aa17.8■□□□□ 0.44
PRKCH-213ENST00000555185 KIF21AQ7Z4S6 1674 aa17.8■□□□□ 0.44
PRKCH-213ENST00000555185 BAZ1BQ9UIG0 1483 aaKnown RBP17.74■□□□□ 0.43
PRKCH-213ENST00000555185 LAMC3Q9Y6N6 1575 aa17.72■□□□□ 0.43
PRKCH-213ENST00000555185 PDS5BQ9NTI5 1447 aa17.63■□□□□ 0.41
PRKCH-213ENST00000555185 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.41
PRKCH-213ENST00000555185 PEG3Q9GZU2 1588 aa17.56■□□□□ 0.4
PRKCH-213ENST00000555185 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
PRKCH-213ENST00000555185 WDR62O43379 1518 aa17.52■□□□□ 0.4
PRKCH-213ENST00000555185 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
PRKCH-213ENST00000555185 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
PRKCH-213ENST00000555185 OSCARQ8IYS5 282 aa17.46■□□□□ 0.39
PRKCH-213ENST00000555185 RIMBP3CA6NJZ7 1639 aa17.38■□□□□ 0.37
PRKCH-213ENST00000555185 RIMBP3BA6NNM3 1639 aa17.38■□□□□ 0.37
PRKCH-213ENST00000555185 RIMBP3Q9UFD9 1639 aa17.38■□□□□ 0.37
PRKCH-213ENST00000555185 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
PRKCH-213ENST00000555185 FANCD2Q9BXW9 1451 aa17.31■□□□□ 0.36
PRKCH-213ENST00000555185 WIZO95785 1651 aa17.29■□□□□ 0.36
PRKCH-213ENST00000555185 URB2Q14146 1524 aaKnown RBP17.24■□□□□ 0.35
PRKCH-213ENST00000555185 ARHGEF11O15085 1522 aa17.23■□□□□ 0.35
PRKCH-213ENST00000555185 TRHP20396 242 aaPredicted RBP17.17■□□□□ 0.34
PRKCH-213ENST00000555185 CYB5RLQ6IPT4 315 aa17.17■□□□□ 0.34
PRKCH-213ENST00000555185 CFTRP13569 1480 aa17.15■□□□□ 0.34
PRKCH-213ENST00000555185 ZNF608Q9ULD9 1512 aaPredicted RBP17.15■□□□□ 0.34
PRKCH-213ENST00000555185 AEBP2Q6ZN18 517 aaPredicted RBP17.05■□□□□ 0.32
PRKCH-213ENST00000555185 ARAP1Q96P48 1450 aa17.05■□□□□ 0.32
PRKCH-213ENST00000555185 IFT140Q96RY7 1462 aa17.02■□□□□ 0.32
PRKCH-213ENST00000555185 CHD1O14646 1710 aa17.01■□□□□ 0.31
PRKCH-213ENST00000555185 EIF4G3O43432 1585 aaKnown RBP16.99■□□□□ 0.31
PRKCH-213ENST00000555185 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
PRKCH-213ENST00000555185 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
PRKCH-213ENST00000555185 TOPBP1Q92547 1522 aa16.93■□□□□ 0.3
PRKCH-213ENST00000555185 FBLN2P98095 1184 aa16.92■□□□□ 0.3
PRKCH-213ENST00000555185 AQRO60306 1485 aaKnown RBP eCLIP16.91■□□□□ 0.3
PRKCH-213ENST00000555185 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
PRKCH-213ENST00000555185 TARBP1Q13395 1621 aaKnown RBP16.82■□□□□ 0.28
PRKCH-213ENST00000555185 DNMBPQ6XZF7 1577 aa16.8■□□□□ 0.28
PRKCH-213ENST00000555185 CCDC88BA6NC98 1476 aa16.8■□□□□ 0.28
PRKCH-213ENST00000555185 ABCC8Q09428 1581 aa16.74■□□□□ 0.27
PRKCH-213ENST00000555185 CLASP1Q7Z460 1538 aa16.74■□□□□ 0.27
PRKCH-213ENST00000555185 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
PRKCH-213ENST00000555185 POLA1P09884 1462 aaPredicted RBP16.72■□□□□ 0.27
PRKCH-213ENST00000555185 TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.27
PRKCH-213ENST00000555185 SNAPC4Q5SXM2 1469 aa16.71■□□□□ 0.27
PRKCH-213ENST00000555185 SYNJ1O43426 1573 aa16.65■□□□□ 0.26
PRKCH-213ENST00000555185 CHMP7Q8WUX9 453 aaPredicted RBP16.64■□□□□ 0.25
PRKCH-213ENST00000555185 SOGA1O94964 1423 aa16.62■□□□□ 0.25
PRKCH-213ENST00000555185 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
PRKCH-213ENST00000555185 FGD5Q6ZNL6 1462 aa16.55■□□□□ 0.24
PRKCH-213ENST00000555185 MAGI1Q96QZ7 1491 aaPredicted RBP16.55■□□□□ 0.24
PRKCH-213ENST00000555185 ERCC6L2Q5T890 1561 aa16.54■□□□□ 0.24
PRKCH-213ENST00000555185 SYNJ2O15056 1496 aa16.53■□□□□ 0.24
PRKCH-213ENST00000555185 GRIN2BQ13224 1484 aa16.52■□□□□ 0.23
PRKCH-213ENST00000555185 WDR97A6NE52 1622 aa16.5■□□□□ 0.23
PRKCH-213ENST00000555185 PBRM1Q86U86 1689 aa16.49■□□□□ 0.23
PRKCH-213ENST00000555185 CUX1P39880 1505 aa16.46■□□□□ 0.23
PRKCH-213ENST00000555185 KIF13AQ9H1H9 1805 aa16.45■□□□□ 0.22
PRKCH-213ENST00000555185 ILDR1Q86SU0 546 aaPredicted RBP16.43■□□□□ 0.22
PRKCH-213ENST00000555185 CEP170Q5SW79 1584 aa16.38■□□□□ 0.21
PRKCH-213ENST00000555185 ABCA5Q8WWZ7 1642 aa16.34■□□□□ 0.21
PRKCH-213ENST00000555185 GRIN2AQ12879 1464 aa16.33■□□□□ 0.2
PRKCH-213ENST00000555185 KDM4FA0A1W2PPD8 638 aa16.32■□□□□ 0.2
PRKCH-213ENST00000555185 SHROOM2Q13796 1616 aa16.28■□□□□ 0.2
PRKCH-213ENST00000555185 ABCA10Q8WWZ4 1543 aa16.28■□□□□ 0.2
PRKCH-213ENST00000555185 NUP160Q12769 1436 aa16.28■□□□□ 0.2
PRKCH-213ENST00000555185 ADAMTS12P58397 1594 aa16.27■□□□□ 0.2
PRKCH-213ENST00000555185 FAM69CQ0P6D2 419 aa16.27■□□□□ 0.2
PRKCH-213ENST00000555185 ABCC10Q5T3U5 1492 aa16.22■□□□□ 0.19
PRKCH-213ENST00000555185 TSPOAP1O95153 1857 aa16.21■□□□□ 0.19
PRKCH-213ENST00000555185 PRG4Q92954 1404 aaPredicted RBP16.2■□□□□ 0.18
PRKCH-213ENST00000555185 KDM6BO15054 1643 aa16.2■□□□□ 0.18
PRKCH-213ENST00000555185 DIP2BQ9P265 1576 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms