RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 NISCHQ9Y2I1 1504 aa30.06■■■□□ 2.4
SYNE2-214ENST00000554928 AEBP2Q6ZN18 517 aaPredicted RBP26.8■■□□□ 1.88
SYNE2-214ENST00000554928 CCDC180Q9P1Z9 1646 aa26.61■■□□□ 1.85
SYNE2-214ENST00000554928 ABCC9O60706 1549 aa26.18■■□□□ 1.78
SYNE2-214ENST00000554928 CHIC1Q5VXU3 224 aa25.59■■□□□ 1.69
SYNE2-214ENST00000554928 DCAF8L2P0C7V8 631 aa25.15■■□□□ 1.62
SYNE2-214ENST00000554928 ZCCHC6Q5VYS8 1495 aaKnown RBP25.07■■□□□ 1.6
SYNE2-214ENST00000554928 RB1CC1Q8TDY2 1594 aa25.05■■□□□ 1.6
SYNE2-214ENST00000554928 NACADO15069 1562 aa25.04■■□□□ 1.6
SYNE2-214ENST00000554928 MYO15BQ96JP2 1530 aa24.87■■□□□ 1.57
SYNE2-214ENST00000554928 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
SYNE2-214ENST00000554928 UNC13AQ9UPW8 1703 aa24.53■■□□□ 1.52
SYNE2-214ENST00000554928 PABPN1Q86U42 306 aaKnown RBP eCLIP24.51■■□□□ 1.51
SYNE2-214ENST00000554928 SCRIBQ14160 1630 aa24.42■■□□□ 1.5
SYNE2-214ENST00000554928 BICRAQ9NZM4 1560 aa24.41■■□□□ 1.5
SYNE2-214ENST00000554928 DNAJC5BQ9UF47 199 aa24.08■■□□□ 1.45
SYNE2-214ENST00000554928 SHROOM4Q9ULL8 1493 aa23.99■■□□□ 1.43
SYNE2-214ENST00000554928 EIF4G1Q04637 1599 aaKnown RBP23.72■■□□□ 1.39
SYNE2-214ENST00000554928 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
SYNE2-214ENST00000554928 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
SYNE2-214ENST00000554928 SMARCA4P51532 1647 aa23.31■■□□□ 1.32
SYNE2-214ENST00000554928 BAZ1AQ9NRL2 1556 aaPredicted RBP23.25■■□□□ 1.31
SYNE2-214ENST00000554928 MROH2BQ7Z745 1585 aa23.23■■□□□ 1.31
SYNE2-214ENST00000554928 ATAD2BQ9ULI0 1458 aa23.21■■□□□ 1.31
SYNE2-214ENST00000554928 NCAPD3P42695 1498 aa23.15■■□□□ 1.3
SYNE2-214ENST00000554928 SMARCA2P51531 1590 aa23.1■■□□□ 1.29
SYNE2-214ENST00000554928 PEG3Q9GZU2 1588 aa23.05■■□□□ 1.28
SYNE2-214ENST00000554928 HMGXB3Q12766 1538 aa23.01■■□□□ 1.27
SYNE2-214ENST00000554928 BAZ1BQ9UIG0 1483 aaKnown RBP22.98■■□□□ 1.27
SYNE2-214ENST00000554928 SENP3Q9H4L4 574 aaPredicted RBP22.98■■□□□ 1.27
SYNE2-214ENST00000554928 RSF1Q96T23 1441 aaPredicted RBP22.97■■□□□ 1.27
SYNE2-214ENST00000554928 WIZO95785 1651 aa22.96■■□□□ 1.27
SYNE2-214ENST00000554928 NESP48681 1621 aa22.68■■□□□ 1.22
SYNE2-214ENST00000554928 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
SYNE2-214ENST00000554928 PHF23Q9BUL5 403 aaPredicted RBP22.63■■□□□ 1.21
SYNE2-214ENST00000554928 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
SYNE2-214ENST00000554928 LAMC3Q9Y6N6 1575 aa22.48■■□□□ 1.19
SYNE2-214ENST00000554928 ERCC6Q03468 1493 aa22.47■■□□□ 1.19
SYNE2-214ENST00000554928 CCDC88BA6NC98 1476 aa22.46■■□□□ 1.19
SYNE2-214ENST00000554928 SUPT5HO00267 1087 aaKnown RBP22.44■■□□□ 1.18
SYNE2-214ENST00000554928 CFTRP13569 1480 aa22.36■■□□□ 1.17
SYNE2-214ENST00000554928 PDS5BQ9NTI5 1447 aa22.34■■□□□ 1.17
SYNE2-214ENST00000554928 KIF21AQ7Z4S6 1674 aa22.33■■□□□ 1.16
SYNE2-214ENST00000554928 THOC2Q8NI27 1593 aaKnown RBP22.26■■□□□ 1.15
SYNE2-214ENST00000554928 FANCD2Q9BXW9 1451 aa22.24■■□□□ 1.15
SYNE2-214ENST00000554928 CUX2O14529 1486 aa22.19■■□□□ 1.14
SYNE2-214ENST00000554928 CEP164Q9UPV0 1460 aa22.18■■□□□ 1.14
SYNE2-214ENST00000554928 MRC2Q9UBG0 1479 aa22.15■■□□□ 1.14
SYNE2-214ENST00000554928 PRDM2Q13029 1718 aa22.09■■□□□ 1.13
SYNE2-214ENST00000554928 WDR62O43379 1518 aa22.08■■□□□ 1.13
SYNE2-214ENST00000554928 URB2Q14146 1524 aaKnown RBP22.06■■□□□ 1.12
SYNE2-214ENST00000554928 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
SYNE2-214ENST00000554928 DNMBPQ6XZF7 1577 aa21.84■■□□□ 1.09
SYNE2-214ENST00000554928 CUX1P39880 1505 aa21.78■■□□□ 1.08
SYNE2-214ENST00000554928 ABCC8Q09428 1581 aa21.78■■□□□ 1.08
SYNE2-214ENST00000554928 POLA1P09884 1462 aaPredicted RBP21.72■■□□□ 1.07
SYNE2-214ENST00000554928 IFT140Q96RY7 1462 aa21.71■■□□□ 1.07
SYNE2-214ENST00000554928 ZNF608Q9ULD9 1512 aaPredicted RBP21.71■■□□□ 1.07
SYNE2-214ENST00000554928 RAD54L2Q9Y4B4 1467 aa21.69■■□□□ 1.06
SYNE2-214ENST00000554928 FGD5Q6ZNL6 1462 aa21.68■■□□□ 1.06
SYNE2-214ENST00000554928 TARBP1Q13395 1621 aaKnown RBP21.65■■□□□ 1.06
SYNE2-214ENST00000554928 SOGA1O94964 1423 aa21.62■■□□□ 1.05
SYNE2-214ENST00000554928 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.05
SYNE2-214ENST00000554928 SYNJ1O43426 1573 aa21.6■■□□□ 1.05
SYNE2-214ENST00000554928 AQRO60306 1485 aaKnown RBP eCLIP21.58■■□□□ 1.04
SYNE2-214ENST00000554928 TDRD9Q8NDG6 1382 aaKnown RBP21.55■■□□□ 1.04
SYNE2-214ENST00000554928 EIF4G3O43432 1585 aaKnown RBP21.55■■□□□ 1.04
SYNE2-214ENST00000554928 DNAJC5Q9H3Z4 198 aa21.54■■□□□ 1.04
SYNE2-214ENST00000554928 TOP2BQ02880 1626 aa21.53■■□□□ 1.04
SYNE2-214ENST00000554928 BIVM-ERCC5R4GMW8 1640 aa21.52■■□□□ 1.04
SYNE2-214ENST00000554928 WDR97A6NE52 1622 aa21.46■■□□□ 1.03
SYNE2-214ENST00000554928 ABCA10Q8WWZ4 1543 aa21.44■■□□□ 1.02
SYNE2-214ENST00000554928 GAPVD1Q14C86 1478 aa21.36■■□□□ 1.01
SYNE2-214ENST00000554928 SNAPC4Q5SXM2 1469 aa21.35■■□□□ 1.01
SYNE2-214ENST00000554928 ABCA5Q8WWZ7 1642 aa21.35■■□□□ 1.01
SYNE2-214ENST00000554928 GRIN2BQ13224 1484 aa21.33■■□□□ 1.01
SYNE2-214ENST00000554928 FOXD1Q16676 465 aa21.32■■□□□ 1
SYNE2-214ENST00000554928 OSCARQ8IYS5 282 aa21.3■■□□□ 1
SYNE2-214ENST00000554928 FBLN2P98095 1184 aa21.28■■□□□ 1
SYNE2-214ENST00000554928 PBRM1Q86U86 1689 aa21.28■■□□□ 1
SYNE2-214ENST00000554928 CHD1O14646 1710 aa21.26■□□□□ 0.99
SYNE2-214ENST00000554928 MAGI1Q96QZ7 1491 aaPredicted RBP21.25■□□□□ 0.99
SYNE2-214ENST00000554928 CHMP7Q8WUX9 453 aaPredicted RBP21.19■□□□□ 0.98
SYNE2-214ENST00000554928 SYNJ2O15056 1496 aa21.19■□□□□ 0.98
SYNE2-214ENST00000554928 ADAMTS12P58397 1594 aa21.15■□□□□ 0.98
SYNE2-214ENST00000554928 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.98
SYNE2-214ENST00000554928 KIF27Q86VH2 1401 aa21.12■□□□□ 0.97
SYNE2-214ENST00000554928 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
SYNE2-214ENST00000554928 IGF1RP08069 1367 aa21.1■□□□□ 0.97
SYNE2-214ENST00000554928 FHAD1B1AJZ9 1412 aa21.1■□□□□ 0.97
SYNE2-214ENST00000554928 RUSC2Q8N2Y8 1516 aa21.09■□□□□ 0.97
SYNE2-214ENST00000554928 GRIN2AQ12879 1464 aa21.08■□□□□ 0.97
SYNE2-214ENST00000554928 CLASP1Q7Z460 1538 aa21.06■□□□□ 0.96
SYNE2-214ENST00000554928 CEP170Q5SW79 1584 aa21.01■□□□□ 0.95
SYNE2-214ENST00000554928 ARHGEF11O15085 1522 aa21■□□□□ 0.95
SYNE2-214ENST00000554928 NUP160Q12769 1436 aa21■□□□□ 0.95
SYNE2-214ENST00000554928 RIMBP3CA6NJZ7 1639 aa20.99■□□□□ 0.95
SYNE2-214ENST00000554928 RIMBP3BA6NNM3 1639 aa20.99■□□□□ 0.95
SYNE2-214ENST00000554928 RIMBP3Q9UFD9 1639 aa20.99■□□□□ 0.95
SYNE2-214ENST00000554928 CARMIL1Q5VZK9 1371 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 163.2 ms