RNA–Protein interactions for RNA: ENST00000554835.1

PRKCH-210, Transcript of protein kinase C eta, humanhuman

TSL 3

Gene PRKCH, Length 363 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-210ENST00000554835 NISCHQ9Y2I1 1504 aa45.87■■■■■ 4.93
PRKCH-210ENST00000554835 ABCC9O60706 1549 aa41.27■■■■■ 4.2
PRKCH-210ENST00000554835 CCDC180Q9P1Z9 1646 aa41.15■■■■■ 4.18
PRKCH-210ENST00000554835 RB1CC1Q8TDY2 1594 aa39.19■■■■□ 3.86
PRKCH-210ENST00000554835 NACADO15069 1562 aa38.92■■■■□ 3.82
PRKCH-210ENST00000554835 DNAJC5BQ9UF47 199 aa38.87■■■■□ 3.81
PRKCH-210ENST00000554835 DCAF8L2P0C7V8 631 aa38.7■■■■□ 3.79
PRKCH-210ENST00000554835 PABPN1Q86U42 306 aaKnown RBP eCLIP38.43■■■■□ 3.74
PRKCH-210ENST00000554835 UNC13AQ9UPW8 1703 aa38.39■■■■□ 3.74
PRKCH-210ENST00000554835 MYO15BQ96JP2 1530 aa38.37■■■■□ 3.73
PRKCH-210ENST00000554835 BICRAQ9NZM4 1560 aa38.15■■■■□ 3.7
PRKCH-210ENST00000554835 ZCCHC6Q5VYS8 1495 aaKnown RBP38.01■■■■□ 3.67
PRKCH-210ENST00000554835 DCAF1Q9Y4B6 1507 aa37.87■■■■□ 3.65
PRKCH-210ENST00000554835 SCRIBQ14160 1630 aa37.53■■■■□ 3.6
PRKCH-210ENST00000554835 SHROOM4Q9ULL8 1493 aa37.52■■■■□ 3.6
PRKCH-210ENST00000554835 CC2D2AQ9P2K1 1620 aa37.28■■■■□ 3.56
PRKCH-210ENST00000554835 EIF4G1Q04637 1599 aaKnown RBP37.17■■■■□ 3.54
PRKCH-210ENST00000554835 CECR2Q9BXF3 1484 aa37.16■■■■□ 3.54
PRKCH-210ENST00000554835 NCAPD3P42695 1498 aa35.97■■■■□ 3.35
PRKCH-210ENST00000554835 ATAD2BQ9ULI0 1458 aa35.86■■■■□ 3.33
PRKCH-210ENST00000554835 SMARCA4P51532 1647 aa35.79■■■■□ 3.32
PRKCH-210ENST00000554835 SMARCA2P51531 1590 aa35.7■■■■□ 3.31
PRKCH-210ENST00000554835 HMGXB3Q12766 1538 aa35.67■■■■□ 3.3
PRKCH-210ENST00000554835 DNAJC5Q9H3Z4 198 aa35.66■■■■□ 3.3
PRKCH-210ENST00000554835 BAZ1AQ9NRL2 1556 aaPredicted RBP35.57■■■■□ 3.28
PRKCH-210ENST00000554835 ERCC6Q03468 1493 aa35.56■■■■□ 3.28
PRKCH-210ENST00000554835 CUX2O14529 1486 aa35.54■■■■□ 3.28
PRKCH-210ENST00000554835 BAZ1BQ9UIG0 1483 aaKnown RBP35.47■■■■□ 3.27
PRKCH-210ENST00000554835 NESP48681 1621 aa35.46■■■■□ 3.27
PRKCH-210ENST00000554835 PEG3Q9GZU2 1588 aa35.46■■■■□ 3.27
PRKCH-210ENST00000554835 MROH2BQ7Z745 1585 aa35.38■■■■□ 3.25
PRKCH-210ENST00000554835 LAMC3Q9Y6N6 1575 aa35.13■■■■□ 3.21
PRKCH-210ENST00000554835 THOC2Q8NI27 1593 aaKnown RBP35.09■■■■□ 3.21
PRKCH-210ENST00000554835 KIF21AQ7Z4S6 1674 aa34.98■■■■□ 3.19
PRKCH-210ENST00000554835 WIZO95785 1651 aa34.94■■■■□ 3.18
PRKCH-210ENST00000554835 PDS5BQ9NTI5 1447 aa34.91■■■■□ 3.18
PRKCH-210ENST00000554835 CADPSQ9ULU8 1353 aa34.87■■■■□ 3.17
PRKCH-210ENST00000554835 MRC2Q9UBG0 1479 aa34.65■■■■□ 3.14
PRKCH-210ENST00000554835 RSF1Q96T23 1441 aaPredicted RBP34.61■■■■□ 3.13
PRKCH-210ENST00000554835 WDR62O43379 1518 aa34.58■■■■□ 3.13
PRKCH-210ENST00000554835 CEP164Q9UPV0 1460 aa34.48■■■■□ 3.11
PRKCH-210ENST00000554835 CFTRP13569 1480 aa34.46■■■■□ 3.11
PRKCH-210ENST00000554835 FANCD2Q9BXW9 1451 aa34.46■■■■□ 3.11
PRKCH-210ENST00000554835 TOP2AP11388 1531 aaKnown RBP34.45■■■■□ 3.11
PRKCH-210ENST00000554835 URB2Q14146 1524 aaKnown RBP34.23■■■■□ 3.07
PRKCH-210ENST00000554835 CCDC88BA6NC98 1476 aa34.1■■■■□ 3.05
PRKCH-210ENST00000554835 PRDM2Q13029 1718 aa34.07■■■■□ 3.05
PRKCH-210ENST00000554835 TRIM41Q8WV44 630 aa34.03■■■■□ 3.04
PRKCH-210ENST00000554835 OSCARQ8IYS5 282 aa33.91■■■■□ 3.02
PRKCH-210ENST00000554835 ZNF608Q9ULD9 1512 aaPredicted RBP33.83■■■■□ 3.01
PRKCH-210ENST00000554835 TOPBP1Q92547 1522 aa33.82■■■■□ 3
PRKCH-210ENST00000554835 IFT140Q96RY7 1462 aa33.79■■■■□ 3
PRKCH-210ENST00000554835 ABCC8Q09428 1581 aa33.67■■■□□ 2.98
PRKCH-210ENST00000554835 DNMBPQ6XZF7 1577 aa33.66■■■□□ 2.98
PRKCH-210ENST00000554835 EIF4G3O43432 1585 aaKnown RBP33.59■■■□□ 2.97
PRKCH-210ENST00000554835 TARBP1Q13395 1621 aaKnown RBP33.54■■■□□ 2.96
PRKCH-210ENST00000554835 RIMBP3CA6NJZ7 1639 aa33.52■■■□□ 2.96
PRKCH-210ENST00000554835 RIMBP3BA6NNM3 1639 aa33.52■■■□□ 2.96
PRKCH-210ENST00000554835 RIMBP3Q9UFD9 1639 aa33.52■■■□□ 2.96
PRKCH-210ENST00000554835 AQRO60306 1485 aaKnown RBP eCLIP33.5■■■□□ 2.95
PRKCH-210ENST00000554835 POLA1P09884 1462 aaPredicted RBP33.48■■■□□ 2.95
PRKCH-210ENST00000554835 ARHGEF11O15085 1522 aa33.41■■■□□ 2.94
PRKCH-210ENST00000554835 RAD54L2Q9Y4B4 1467 aa33.37■■■□□ 2.93
PRKCH-210ENST00000554835 CHD1O14646 1710 aa33.36■■■□□ 2.93
PRKCH-210ENST00000554835 SOGA1O94964 1423 aa33.29■■■□□ 2.92
PRKCH-210ENST00000554835 TDRD9Q8NDG6 1382 aaKnown RBP33.27■■■□□ 2.92
PRKCH-210ENST00000554835 FGD5Q6ZNL6 1462 aa33.25■■■□□ 2.91
PRKCH-210ENST00000554835 CUX1P39880 1505 aa33.23■■■□□ 2.91
PRKCH-210ENST00000554835 FBLN2P98095 1184 aa33.22■■■□□ 2.91
PRKCH-210ENST00000554835 CYB5RLQ6IPT4 315 aa33.15■■■□□ 2.9
PRKCH-210ENST00000554835 SNAPC4Q5SXM2 1469 aa33.12■■■□□ 2.89
PRKCH-210ENST00000554835 WDR97A6NE52 1622 aa33.11■■■□□ 2.89
PRKCH-210ENST00000554835 ARAP1Q96P48 1450 aa33.09■■■□□ 2.89
PRKCH-210ENST00000554835 MAGI1Q96QZ7 1491 aaPredicted RBP33■■■□□ 2.87
PRKCH-210ENST00000554835 GRIN2BQ13224 1484 aa32.99■■■□□ 2.87
PRKCH-210ENST00000554835 CLASP1Q7Z460 1538 aa32.99■■■□□ 2.87
PRKCH-210ENST00000554835 SUPT5HO00267 1087 aaKnown RBP32.99■■■□□ 2.87
PRKCH-210ENST00000554835 CHMP7Q8WUX9 453 aaPredicted RBP32.96■■■□□ 2.87
PRKCH-210ENST00000554835 SYNJ2O15056 1496 aa32.91■■■□□ 2.86
PRKCH-210ENST00000554835 SYNJ1O43426 1573 aa32.89■■■□□ 2.86
PRKCH-210ENST00000554835 GAPVD1Q14C86 1478 aa32.88■■■□□ 2.85
PRKCH-210ENST00000554835 PBRM1Q86U86 1689 aa32.88■■■□□ 2.85
PRKCH-210ENST00000554835 ABCA10Q8WWZ4 1543 aa32.87■■■□□ 2.85
PRKCH-210ENST00000554835 ABCA5Q8WWZ7 1642 aa32.83■■■□□ 2.85
PRKCH-210ENST00000554835 TRHP20396 242 aaPredicted RBP32.76■■■□□ 2.83
PRKCH-210ENST00000554835 WRNQ14191 1432 aaPredicted RBP eCLIP32.68■■■□□ 2.82
PRKCH-210ENST00000554835 TOP2BQ02880 1626 aa32.65■■■□□ 2.82
PRKCH-210ENST00000554835 BIVM-ERCC5R4GMW8 1640 aa32.65■■■□□ 2.82
PRKCH-210ENST00000554835 GRIN2AQ12879 1464 aa32.6■■■□□ 2.81
PRKCH-210ENST00000554835 ADAMTS12P58397 1594 aa32.58■■■□□ 2.81
PRKCH-210ENST00000554835 ERCC6L2Q5T890 1561 aa32.52■■■□□ 2.8
PRKCH-210ENST00000554835 CEP170Q5SW79 1584 aa32.51■■■□□ 2.79
PRKCH-210ENST00000554835 NUP160Q12769 1436 aa32.51■■■□□ 2.79
PRKCH-210ENST00000554835 FHAD1B1AJZ9 1412 aa32.45■■■□□ 2.79
PRKCH-210ENST00000554835 ERICH3Q5RHP9 1530 aa32.42■■■□□ 2.78
PRKCH-210ENST00000554835 SHROOM2Q13796 1616 aa32.37■■■□□ 2.77
PRKCH-210ENST00000554835 PRG4Q92954 1404 aaPredicted RBP32.18■■■□□ 2.74
PRKCH-210ENST00000554835 JPH4Q96JJ6 628 aa32.16■■■□□ 2.74
PRKCH-210ENST00000554835 RUSC2Q8N2Y8 1516 aa32.12■■■□□ 2.73
PRKCH-210ENST00000554835 IGF1RP08069 1367 aa32.05■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms