RNA–Protein interactions for RNA: ENST00000554813.5

APEX1-208, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 3

Gene APEX1, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-208ENST00000554813 NISCHQ9Y2I1 1504 aa32.11■■■□□ 2.73
APEX1-208ENST00000554813 CCDC180Q9P1Z9 1646 aa28.54■■■□□ 2.16
APEX1-208ENST00000554813 ABCC9O60706 1549 aa28.07■■■□□ 2.08
APEX1-208ENST00000554813 DCAF8L2P0C7V8 631 aa27.01■■□□□ 1.91
APEX1-208ENST00000554813 RB1CC1Q8TDY2 1594 aa26.97■■□□□ 1.91
APEX1-208ENST00000554813 NACADO15069 1562 aa26.92■■□□□ 1.9
APEX1-208ENST00000554813 MYO15BQ96JP2 1530 aa26.72■■□□□ 1.87
APEX1-208ENST00000554813 ZCCHC6Q5VYS8 1495 aaKnown RBP26.7■■□□□ 1.87
APEX1-208ENST00000554813 DCAF1Q9Y4B6 1507 aa26.56■■□□□ 1.84
APEX1-208ENST00000554813 PABPN1Q86U42 306 aaKnown RBP eCLIP26.27■■□□□ 1.8
APEX1-208ENST00000554813 UNC13AQ9UPW8 1703 aa26.26■■□□□ 1.79
APEX1-208ENST00000554813 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
APEX1-208ENST00000554813 SCRIBQ14160 1630 aa26.05■■□□□ 1.76
APEX1-208ENST00000554813 DNAJC5BQ9UF47 199 aa25.87■■□□□ 1.73
APEX1-208ENST00000554813 SHROOM4Q9ULL8 1493 aa25.85■■□□□ 1.73
APEX1-208ENST00000554813 EIF4G1Q04637 1599 aaKnown RBP25.44■■□□□ 1.66
APEX1-208ENST00000554813 CC2D2AQ9P2K1 1620 aa25.36■■□□□ 1.65
APEX1-208ENST00000554813 CECR2Q9BXF3 1484 aa25.24■■□□□ 1.63
APEX1-208ENST00000554813 SMARCA4P51532 1647 aa24.91■■□□□ 1.58
APEX1-208ENST00000554813 BAZ1AQ9NRL2 1556 aaPredicted RBP24.9■■□□□ 1.58
APEX1-208ENST00000554813 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
APEX1-208ENST00000554813 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.57
APEX1-208ENST00000554813 SMARCA2P51531 1590 aa24.8■■□□□ 1.56
APEX1-208ENST00000554813 MROH2BQ7Z745 1585 aa24.73■■□□□ 1.55
APEX1-208ENST00000554813 HMGXB3Q12766 1538 aa24.67■■□□□ 1.54
APEX1-208ENST00000554813 PEG3Q9GZU2 1588 aa24.67■■□□□ 1.54
APEX1-208ENST00000554813 BAZ1BQ9UIG0 1483 aaKnown RBP24.64■■□□□ 1.53
APEX1-208ENST00000554813 RSF1Q96T23 1441 aaPredicted RBP24.45■■□□□ 1.51
APEX1-208ENST00000554813 WIZO95785 1651 aa24.45■■□□□ 1.5
APEX1-208ENST00000554813 NESP48681 1621 aa24.24■■□□□ 1.47
APEX1-208ENST00000554813 ERCC6Q03468 1493 aa24.23■■□□□ 1.47
APEX1-208ENST00000554813 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.46
APEX1-208ENST00000554813 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
APEX1-208ENST00000554813 CADPSQ9ULU8 1353 aa24.15■■□□□ 1.46
APEX1-208ENST00000554813 PDS5BQ9NTI5 1447 aa24.09■■□□□ 1.45
APEX1-208ENST00000554813 CUX2O14529 1486 aa23.99■■□□□ 1.43
APEX1-208ENST00000554813 CCDC88BA6NC98 1476 aa23.94■■□□□ 1.42
APEX1-208ENST00000554813 CFTRP13569 1480 aa23.94■■□□□ 1.42
APEX1-208ENST00000554813 KIF21AQ7Z4S6 1674 aa23.91■■□□□ 1.42
APEX1-208ENST00000554813 THOC2Q8NI27 1593 aaKnown RBP23.85■■□□□ 1.41
APEX1-208ENST00000554813 FANCD2Q9BXW9 1451 aa23.84■■□□□ 1.41
APEX1-208ENST00000554813 SUPT5HO00267 1087 aaKnown RBP23.84■■□□□ 1.41
APEX1-208ENST00000554813 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
APEX1-208ENST00000554813 MRC2Q9UBG0 1479 aa23.79■■□□□ 1.4
APEX1-208ENST00000554813 WDR62O43379 1518 aa23.69■■□□□ 1.38
APEX1-208ENST00000554813 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
APEX1-208ENST00000554813 URB2Q14146 1524 aaKnown RBP23.58■■□□□ 1.36
APEX1-208ENST00000554813 ABCC8Q09428 1581 aa23.48■■□□□ 1.35
APEX1-208ENST00000554813 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
APEX1-208ENST00000554813 DNAJC5Q9H3Z4 198 aa23.42■■□□□ 1.34
APEX1-208ENST00000554813 DNMBPQ6XZF7 1577 aa23.38■■□□□ 1.33
APEX1-208ENST00000554813 IFT140Q96RY7 1462 aa23.33■■□□□ 1.33
APEX1-208ENST00000554813 POLA1P09884 1462 aaPredicted RBP23.22■■□□□ 1.31
APEX1-208ENST00000554813 CUX1P39880 1505 aa23.2■■□□□ 1.3
APEX1-208ENST00000554813 ZNF608Q9ULD9 1512 aaPredicted RBP23.2■■□□□ 1.3
APEX1-208ENST00000554813 SOGA1O94964 1423 aa23.19■■□□□ 1.3
APEX1-208ENST00000554813 FGD5Q6ZNL6 1462 aa23.16■■□□□ 1.3
APEX1-208ENST00000554813 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
APEX1-208ENST00000554813 RAD54L2Q9Y4B4 1467 aa23.13■■□□□ 1.29
APEX1-208ENST00000554813 AQRO60306 1485 aaKnown RBP eCLIP23.1■■□□□ 1.293e-9■■■□□ 17.9
APEX1-208ENST00000554813 EIF4G3O43432 1585 aaKnown RBP23.07■■□□□ 1.28
APEX1-208ENST00000554813 OSCARQ8IYS5 282 aa23.07■■□□□ 1.28
APEX1-208ENST00000554813 WRNQ14191 1432 aaPredicted RBP eCLIP23.07■■□□□ 1.285e-6■■■■■ 29.2
APEX1-208ENST00000554813 TDRD9Q8NDG6 1382 aaKnown RBP23.06■■□□□ 1.28
APEX1-208ENST00000554813 WDR97A6NE52 1622 aa22.98■■□□□ 1.27
APEX1-208ENST00000554813 TOP2BQ02880 1626 aa22.98■■□□□ 1.27
APEX1-208ENST00000554813 BIVM-ERCC5R4GMW8 1640 aa22.96■■□□□ 1.27
APEX1-208ENST00000554813 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
APEX1-208ENST00000554813 ABCA10Q8WWZ4 1543 aa22.93■■□□□ 1.26
APEX1-208ENST00000554813 FBLN2P98095 1184 aa22.91■■□□□ 1.26
APEX1-208ENST00000554813 GRIN2BQ13224 1484 aa22.9■■□□□ 1.26
APEX1-208ENST00000554813 GAPVD1Q14C86 1478 aa22.89■■□□□ 1.25
APEX1-208ENST00000554813 SNAPC4Q5SXM2 1469 aa22.85■■□□□ 1.25
APEX1-208ENST00000554813 MAGI1Q96QZ7 1491 aaPredicted RBP22.84■■□□□ 1.25
APEX1-208ENST00000554813 CHMP7Q8WUX9 453 aaPredicted RBP22.83■■□□□ 1.25
APEX1-208ENST00000554813 ABCA5Q8WWZ7 1642 aa22.8■■□□□ 1.24
APEX1-208ENST00000554813 CHD1O14646 1710 aa22.79■■□□□ 1.24
APEX1-208ENST00000554813 PBRM1Q86U86 1689 aa22.77■■□□□ 1.24
APEX1-208ENST00000554813 SYNJ2O15056 1496 aa22.75■■□□□ 1.23
APEX1-208ENST00000554813 ERICH3Q5RHP9 1530 aa22.66■■□□□ 1.22
APEX1-208ENST00000554813 FHAD1B1AJZ9 1412 aa22.63■■□□□ 1.21
APEX1-208ENST00000554813 TRIM41Q8WV44 630 aa22.62■■□□□ 1.21
APEX1-208ENST00000554813 KIF27Q86VH2 1401 aa22.62■■□□□ 1.21
APEX1-208ENST00000554813 ADAMTS12P58397 1594 aa22.59■■□□□ 1.21
APEX1-208ENST00000554813 GRIN2AQ12879 1464 aa22.59■■□□□ 1.21
APEX1-208ENST00000554813 ARHGEF11O15085 1522 aa22.58■■□□□ 1.21
APEX1-208ENST00000554813 RIMBP3CA6NJZ7 1639 aa22.58■■□□□ 1.21
APEX1-208ENST00000554813 RIMBP3BA6NNM3 1639 aa22.58■■□□□ 1.21
APEX1-208ENST00000554813 RIMBP3Q9UFD9 1639 aa22.58■■□□□ 1.21
APEX1-208ENST00000554813 CLASP1Q7Z460 1538 aa22.56■■□□□ 1.2
APEX1-208ENST00000554813 IGF1RP08069 1367 aa22.54■■□□□ 1.2
APEX1-208ENST00000554813 NUP160Q12769 1436 aa22.48■■□□□ 1.19
APEX1-208ENST00000554813 CYB5RLQ6IPT4 315 aa22.48■■□□□ 1.19
APEX1-208ENST00000554813 CEP170Q5SW79 1584 aa22.44■■□□□ 1.18
APEX1-208ENST00000554813 CUL7Q14999 1698 aa22.42■■□□□ 1.18
APEX1-208ENST00000554813 CARMIL1Q5VZK9 1371 aa22.41■■□□□ 1.18
APEX1-208ENST00000554813 ARAP1Q96P48 1450 aa22.38■■□□□ 1.17
APEX1-208ENST00000554813 JPH4Q96JJ6 628 aa22.34■■□□□ 1.17
APEX1-208ENST00000554813 RUSC2Q8N2Y8 1516 aa22.33■■□□□ 1.17
APEX1-208ENST00000554813 SHROOM2Q13796 1616 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms