RNA–Protein interactions for RNA: ENST00000554731.1

RDH11-207, Transcript of retinol dehydrogenase 11, humanhuman

TSL 3

Gene RDH11, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-207ENST00000554731 NISCHQ9Y2I1 1504 aa31.34■■■□□ 2.61
RDH11-207ENST00000554731 ABCC9O60706 1549 aa28.25■■■□□ 2.11
RDH11-207ENST00000554731 CCDC180Q9P1Z9 1646 aa28.14■■■□□ 2.09
RDH11-207ENST00000554731 RB1CC1Q8TDY2 1594 aa26.85■■□□□ 1.89
RDH11-207ENST00000554731 NACADO15069 1562 aa26.65■■□□□ 1.86
RDH11-207ENST00000554731 DNAJC5BQ9UF47 199 aa26.57■■□□□ 1.84
RDH11-207ENST00000554731 DCAF8L2P0C7V8 631 aa26.54■■□□□ 1.84
RDH11-207ENST00000554731 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
RDH11-207ENST00000554731 MYO15BQ96JP2 1530 aa26.26■■□□□ 1.79
RDH11-207ENST00000554731 UNC13AQ9UPW8 1703 aa26.17■■□□□ 1.78
RDH11-207ENST00000554731 BICRAQ9NZM4 1560 aa26.04■■□□□ 1.76
RDH11-207ENST00000554731 ZCCHC6Q5VYS8 1495 aaKnown RBP25.96■■□□□ 1.75
RDH11-207ENST00000554731 DCAF1Q9Y4B6 1507 aa25.88■■□□□ 1.73
RDH11-207ENST00000554731 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
RDH11-207ENST00000554731 SCRIBQ14160 1630 aa25.64■■□□□ 1.7
RDH11-207ENST00000554731 CC2D2AQ9P2K1 1620 aa25.49■■□□□ 1.67
RDH11-207ENST00000554731 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
RDH11-207ENST00000554731 EIF4G1Q04637 1599 aaKnown RBP25.43■■□□□ 1.66
RDH11-207ENST00000554731 NCAPD3P42695 1498 aa24.62■■□□□ 1.53
RDH11-207ENST00000554731 ATAD2BQ9ULI0 1458 aa24.52■■□□□ 1.52
RDH11-207ENST00000554731 DNAJC5Q9H3Z4 198 aa24.49■■□□□ 1.51
RDH11-207ENST00000554731 SMARCA2P51531 1590 aa24.46■■□□□ 1.51
RDH11-207ENST00000554731 SMARCA4P51532 1647 aa24.45■■□□□ 1.5
RDH11-207ENST00000554731 ERCC6Q03468 1493 aa24.42■■□□□ 1.5
RDH11-207ENST00000554731 HMGXB3Q12766 1538 aa24.41■■□□□ 1.5
RDH11-207ENST00000554731 CUX2O14529 1486 aa24.39■■□□□ 1.5
RDH11-207ENST00000554731 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.49
RDH11-207ENST00000554731 BAZ1BQ9UIG0 1483 aaKnown RBP24.29■■□□□ 1.48
RDH11-207ENST00000554731 NESP48681 1621 aa24.23■■□□□ 1.47
RDH11-207ENST00000554731 PEG3Q9GZU2 1588 aa24.21■■□□□ 1.47
RDH11-207ENST00000554731 MROH2BQ7Z745 1585 aa24.14■■□□□ 1.45
RDH11-207ENST00000554731 LAMC3Q9Y6N6 1575 aa24.05■■□□□ 1.44
RDH11-207ENST00000554731 THOC2Q8NI27 1593 aaKnown RBP23.99■■□□□ 1.43
RDH11-207ENST00000554731 PDS5BQ9NTI5 1447 aa23.95■■□□□ 1.42
RDH11-207ENST00000554731 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
RDH11-207ENST00000554731 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
RDH11-207ENST00000554731 WIZO95785 1651 aa23.83■■□□□ 1.4
RDH11-207ENST00000554731 MRC2Q9UBG0 1479 aa23.74■■□□□ 1.39
RDH11-207ENST00000554731 WDR62O43379 1518 aa23.66■■□□□ 1.38
RDH11-207ENST00000554731 RSF1Q96T23 1441 aaPredicted RBP23.63■■□□□ 1.37
RDH11-207ENST00000554731 CEP164Q9UPV0 1460 aa23.62■■□□□ 1.37
RDH11-207ENST00000554731 FANCD2Q9BXW9 1451 aa23.59■■□□□ 1.37
RDH11-207ENST00000554731 CFTRP13569 1480 aa23.57■■□□□ 1.36
RDH11-207ENST00000554731 TOP2AP11388 1531 aaKnown RBP23.55■■□□□ 1.36
RDH11-207ENST00000554731 TRIM41Q8WV44 630 aa23.39■■□□□ 1.33
RDH11-207ENST00000554731 URB2Q14146 1524 aaKnown RBP23.38■■□□□ 1.33
RDH11-207ENST00000554731 OSCARQ8IYS5 282 aa23.29■■□□□ 1.32
RDH11-207ENST00000554731 CCDC88BA6NC98 1476 aa23.29■■□□□ 1.32
RDH11-207ENST00000554731 PRDM2Q13029 1718 aa23.27■■□□□ 1.32
RDH11-207ENST00000554731 IFT140Q96RY7 1462 aa23.16■■□□□ 1.3
RDH11-207ENST00000554731 TOPBP1Q92547 1522 aa23.13■■□□□ 1.29
RDH11-207ENST00000554731 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
RDH11-207ENST00000554731 ABCC8Q09428 1581 aa23.1■■□□□ 1.29
RDH11-207ENST00000554731 DNMBPQ6XZF7 1577 aa23.03■■□□□ 1.28
RDH11-207ENST00000554731 EIF4G3O43432 1585 aaKnown RBP22.97■■□□□ 1.27
RDH11-207ENST00000554731 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
RDH11-207ENST00000554731 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
RDH11-207ENST00000554731 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
RDH11-207ENST00000554731 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.268e-7■■■■■ 28.7
RDH11-207ENST00000554731 TARBP1Q13395 1621 aaKnown RBP22.9■■□□□ 1.26
RDH11-207ENST00000554731 POLA1P09884 1462 aaPredicted RBP22.89■■□□□ 1.25
RDH11-207ENST00000554731 ARHGEF11O15085 1522 aa22.88■■□□□ 1.25
RDH11-207ENST00000554731 FBLN2P98095 1184 aa22.81■■□□□ 1.24
RDH11-207ENST00000554731 RAD54L2Q9Y4B4 1467 aa22.8■■□□□ 1.24
RDH11-207ENST00000554731 SOGA1O94964 1423 aa22.8■■□□□ 1.24
RDH11-207ENST00000554731 CHD1O14646 1710 aa22.79■■□□□ 1.24
RDH11-207ENST00000554731 TDRD9Q8NDG6 1382 aaKnown RBP22.76■■□□□ 1.23
RDH11-207ENST00000554731 CYB5RLQ6IPT4 315 aa22.75■■□□□ 1.23
RDH11-207ENST00000554731 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
RDH11-207ENST00000554731 CUX1P39880 1505 aa22.69■■□□□ 1.22
RDH11-207ENST00000554731 WDR97A6NE52 1622 aa22.68■■□□□ 1.22
RDH11-207ENST00000554731 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
RDH11-207ENST00000554731 ARAP1Q96P48 1450 aa22.65■■□□□ 1.22
RDH11-207ENST00000554731 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
RDH11-207ENST00000554731 GRIN2BQ13224 1484 aa22.61■■□□□ 1.21
RDH11-207ENST00000554731 MAGI1Q96QZ7 1491 aaPredicted RBP22.61■■□□□ 1.21
RDH11-207ENST00000554731 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
RDH11-207ENST00000554731 SUPT5HO00267 1087 aaKnown RBP22.55■■□□□ 1.2
RDH11-207ENST00000554731 CLASP1Q7Z460 1538 aa22.55■■□□□ 1.2
RDH11-207ENST00000554731 SYNJ2O15056 1496 aa22.54■■□□□ 1.2
RDH11-207ENST00000554731 TRHP20396 242 aaPredicted RBP22.53■■□□□ 1.2
RDH11-207ENST00000554731 GAPVD1Q14C86 1478 aa22.52■■□□□ 1.2
RDH11-207ENST00000554731 ABCA10Q8WWZ4 1543 aa22.47■■□□□ 1.19
RDH11-207ENST00000554731 PBRM1Q86U86 1689 aa22.46■■□□□ 1.19
RDH11-207ENST00000554731 ABCA5Q8WWZ7 1642 aa22.42■■□□□ 1.18
RDH11-207ENST00000554731 WRNQ14191 1432 aaPredicted RBP eCLIP22.4■■□□□ 1.18
RDH11-207ENST00000554731 GRIN2AQ12879 1464 aa22.31■■□□□ 1.16
RDH11-207ENST00000554731 TOP2BQ02880 1626 aa22.3■■□□□ 1.16
RDH11-207ENST00000554731 BIVM-ERCC5R4GMW8 1640 aa22.28■■□□□ 1.16
RDH11-207ENST00000554731 ADAMTS12P58397 1594 aa22.27■■□□□ 1.16
RDH11-207ENST00000554731 NUP160Q12769 1436 aa22.24■■□□□ 1.15
RDH11-207ENST00000554731 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
RDH11-207ENST00000554731 CEP170Q5SW79 1584 aa22.21■■□□□ 1.15
RDH11-207ENST00000554731 ERICH3Q5RHP9 1530 aa22.19■■□□□ 1.14
RDH11-207ENST00000554731 ERCC6L2Q5T890 1561 aa22.18■■□□□ 1.14
RDH11-207ENST00000554731 SHROOM2Q13796 1616 aa22.12■■□□□ 1.13
RDH11-207ENST00000554731 PRG4Q92954 1404 aaPredicted RBP22.05■■□□□ 1.12
RDH11-207ENST00000554731 JPH4Q96JJ6 628 aa22.03■■□□□ 1.12
RDH11-207ENST00000554731 AEBP2Q6ZN18 517 aaPredicted RBP21.95■■□□□ 1.1
RDH11-207ENST00000554731 RUSC2Q8N2Y8 1516 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms