RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 NISCHQ9Y2I1 1504 aa33.43■■■□□ 2.94
SHOX2-206ENST00000554685 CCDC180Q9P1Z9 1646 aa29.42■■■□□ 2.3
SHOX2-206ENST00000554685 ABCC9O60706 1549 aa28.07■■■□□ 2.08
SHOX2-206ENST00000554685 ZCCHC6Q5VYS8 1495 aaKnown RBP28.01■■■□□ 2.07
SHOX2-206ENST00000554685 AEBP2Q6ZN18 517 aaPredicted RBP27.92■■■□□ 2.06
SHOX2-206ENST00000554685 DCAF1Q9Y4B6 1507 aa27.74■■■□□ 2.03
SHOX2-206ENST00000554685 DCAF8L2P0C7V8 631 aa27.64■■■□□ 2.02
SHOX2-206ENST00000554685 MYO15BQ96JP2 1530 aa27.61■■■□□ 2.01
SHOX2-206ENST00000554685 NACADO15069 1562 aa27.52■■■□□ 2
SHOX2-206ENST00000554685 RB1CC1Q8TDY2 1594 aa27.37■■□□□ 1.97
SHOX2-206ENST00000554685 CHIC1Q5VXU3 224 aa27.23■■□□□ 1.95
SHOX2-206ENST00000554685 SCRIBQ14160 1630 aa26.87■■□□□ 1.89
SHOX2-206ENST00000554685 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
SHOX2-206ENST00000554685 UNC13AQ9UPW8 1703 aa26.62■■□□□ 1.85
SHOX2-206ENST00000554685 BICRAQ9NZM4 1560 aa26.43■■□□□ 1.82
SHOX2-206ENST00000554685 PABPN1Q86U42 306 aaKnown RBP eCLIP26.33■■□□□ 1.81
SHOX2-206ENST00000554685 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
SHOX2-206ENST00000554685 BAZ1AQ9NRL2 1556 aaPredicted RBP25.9■■□□□ 1.74
SHOX2-206ENST00000554685 SMARCA4P51532 1647 aa25.77■■□□□ 1.72
SHOX2-206ENST00000554685 MROH2BQ7Z745 1585 aa25.74■■□□□ 1.71
SHOX2-206ENST00000554685 RSF1Q96T23 1441 aaPredicted RBP25.72■■□□□ 1.71
SHOX2-206ENST00000554685 EIF4G1Q04637 1599 aaKnown RBP25.72■■□□□ 1.71
SHOX2-206ENST00000554685 SUPT5HO00267 1087 aaKnown RBP25.61■■□□□ 1.69
SHOX2-206ENST00000554685 PEG3Q9GZU2 1588 aa25.53■■□□□ 1.68
SHOX2-206ENST00000554685 SMARCA2P51531 1590 aa25.52■■□□□ 1.68
SHOX2-206ENST00000554685 WIZO95785 1651 aa25.48■■□□□ 1.67
SHOX2-206ENST00000554685 ATAD2BQ9ULI0 1458 aa25.47■■□□□ 1.67
SHOX2-206ENST00000554685 CC2D2AQ9P2K1 1620 aa25.42■■□□□ 1.66
SHOX2-206ENST00000554685 NCAPD3P42695 1498 aa25.36■■□□□ 1.65
SHOX2-206ENST00000554685 BAZ1BQ9UIG0 1483 aaKnown RBP25.33■■□□□ 1.65
SHOX2-206ENST00000554685 TOP2AP11388 1531 aaKnown RBP25.32■■□□□ 1.64
SHOX2-206ENST00000554685 HMGXB3Q12766 1538 aa25.32■■□□□ 1.64
SHOX2-206ENST00000554685 DNAJC5BQ9UF47 199 aa25.04■■□□□ 1.6
SHOX2-206ENST00000554685 CCDC88BA6NC98 1476 aa24.99■■□□□ 1.59
SHOX2-206ENST00000554685 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
SHOX2-206ENST00000554685 CFTRP13569 1480 aa24.66■■□□□ 1.54
SHOX2-206ENST00000554685 LAMC3Q9Y6N6 1575 aa24.59■■□□□ 1.53
SHOX2-206ENST00000554685 PRDM2Q13029 1718 aa24.5■■□□□ 1.51
SHOX2-206ENST00000554685 NESP48681 1621 aa24.46■■□□□ 1.51
SHOX2-206ENST00000554685 PDS5BQ9NTI5 1447 aa24.44■■□□□ 1.5
SHOX2-206ENST00000554685 FANCD2Q9BXW9 1451 aa24.38■■□□□ 1.49
SHOX2-206ENST00000554685 CEP164Q9UPV0 1460 aa24.31■■□□□ 1.48
SHOX2-206ENST00000554685 WRNQ14191 1432 aaPredicted RBP eCLIP24.27■■□□□ 1.48
SHOX2-206ENST00000554685 ABCC8Q09428 1581 aa24.26■■□□□ 1.47
SHOX2-206ENST00000554685 TRIM41Q8WV44 630 aa24.2■■□□□ 1.46
SHOX2-206ENST00000554685 ERCC6Q03468 1493 aa24.19■■□□□ 1.46
SHOX2-206ENST00000554685 KIF21AQ7Z4S6 1674 aa24.19■■□□□ 1.46
SHOX2-206ENST00000554685 TOP2BQ02880 1626 aa24.13■■□□□ 1.45
SHOX2-206ENST00000554685 CUX1P39880 1505 aa24.12■■□□□ 1.45
SHOX2-206ENST00000554685 SYNJ1O43426 1573 aa24.12■■□□□ 1.45
SHOX2-206ENST00000554685 MRC2Q9UBG0 1479 aa24.11■■□□□ 1.45
SHOX2-206ENST00000554685 DNMBPQ6XZF7 1577 aa24.11■■□□□ 1.45
SHOX2-206ENST00000554685 BIVM-ERCC5R4GMW8 1640 aa24.1■■□□□ 1.45
SHOX2-206ENST00000554685 URB2Q14146 1524 aaKnown RBP24.05■■□□□ 1.44
SHOX2-206ENST00000554685 TOPBP1Q92547 1522 aa24.05■■□□□ 1.44
SHOX2-206ENST00000554685 WDR62O43379 1518 aa23.99■■□□□ 1.43
SHOX2-206ENST00000554685 THOC2Q8NI27 1593 aaKnown RBP23.97■■□□□ 1.43
SHOX2-206ENST00000554685 PHF23Q9BUL5 403 aaPredicted RBP23.95■■□□□ 1.42
SHOX2-206ENST00000554685 FGD5Q6ZNL6 1462 aa23.94■■□□□ 1.42
SHOX2-206ENST00000554685 POLA1P09884 1462 aaPredicted RBP23.89■■□□□ 1.42
SHOX2-206ENST00000554685 SOGA1O94964 1423 aa23.84■■□□□ 1.41
SHOX2-206ENST00000554685 EEA1Q15075 1411 aa23.81■■□□□ 1.4
SHOX2-206ENST00000554685 ABCA10Q8WWZ4 1543 aa23.78■■□□□ 1.4
SHOX2-206ENST00000554685 IFT140Q96RY7 1462 aa23.77■■□□□ 1.4
SHOX2-206ENST00000554685 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
SHOX2-206ENST00000554685 CUX2O14529 1486 aa23.75■■□□□ 1.39
SHOX2-206ENST00000554685 KIF27Q86VH2 1401 aa23.74■■□□□ 1.39
SHOX2-206ENST00000554685 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
SHOX2-206ENST00000554685 SENP3Q9H4L4 574 aaPredicted RBP23.7■■□□□ 1.38
SHOX2-206ENST00000554685 WDR97A6NE52 1622 aa23.68■■□□□ 1.38
SHOX2-206ENST00000554685 FAM9AQ8IZU1 332 aaPredicted RBP23.62■■□□□ 1.37
SHOX2-206ENST00000554685 RUSC2Q8N2Y8 1516 aa23.62■■□□□ 1.37
SHOX2-206ENST00000554685 CSRNP3Q8WYN3 585 aa23.6■■□□□ 1.37
SHOX2-206ENST00000554685 ABCA5Q8WWZ7 1642 aa23.59■■□□□ 1.37
SHOX2-206ENST00000554685 TDRD9Q8NDG6 1382 aaKnown RBP23.58■■□□□ 1.37
SHOX2-206ENST00000554685 GAPVD1Q14C86 1478 aa23.57■■□□□ 1.36
SHOX2-206ENST00000554685 ZNF608Q9ULD9 1512 aaPredicted RBP23.52■■□□□ 1.36
SHOX2-206ENST00000554685 ERICH3Q5RHP9 1530 aa23.51■■□□□ 1.35
SHOX2-206ENST00000554685 IGF1RP08069 1367 aa23.5■■□□□ 1.35
SHOX2-206ENST00000554685 AQRO60306 1485 aaKnown RBP eCLIP23.49■■□□□ 1.351e-7■■□□□ 12.9
SHOX2-206ENST00000554685 EIF4G3O43432 1585 aaKnown RBP23.49■■□□□ 1.35
SHOX2-206ENST00000554685 GRIN2BQ13224 1484 aa23.49■■□□□ 1.35
SHOX2-206ENST00000554685 CUL7Q14999 1698 aa23.44■■□□□ 1.34
SHOX2-206ENST00000554685 PBRM1Q86U86 1689 aa23.43■■□□□ 1.34
SHOX2-206ENST00000554685 KIF21BO75037 1637 aa23.43■■□□□ 1.34
SHOX2-206ENST00000554685 PRXQ9BXM0 1461 aa23.43■■□□□ 1.34
SHOX2-206ENST00000554685 CARMIL1Q5VZK9 1371 aa23.4■■□□□ 1.34
SHOX2-206ENST00000554685 GOLGA3Q08378 1498 aa23.38■■□□□ 1.33
SHOX2-206ENST00000554685 MAGI1Q96QZ7 1491 aaPredicted RBP23.36■■□□□ 1.33
SHOX2-206ENST00000554685 RAPGEF2Q9Y4G8 1499 aa23.36■■□□□ 1.33
SHOX2-206ENST00000554685 FHAD1B1AJZ9 1412 aa23.34■■□□□ 1.33
SHOX2-206ENST00000554685 SNAPC4Q5SXM2 1469 aa23.33■■□□□ 1.33
SHOX2-206ENST00000554685 ADAMTS12P58397 1594 aa23.32■■□□□ 1.32
SHOX2-206ENST00000554685 LOC105371045A0A1W2PR82 267 aa23.27■■□□□ 1.32
SHOX2-206ENST00000554685 SYNJ2O15056 1496 aa23.24■■□□□ 1.31
SHOX2-206ENST00000554685 UBTFP17480 764 aaKnown RBP23.24■■□□□ 1.31
SHOX2-206ENST00000554685 EHMT2Q96KQ7 1210 aa23.23■■□□□ 1.31
SHOX2-206ENST00000554685 TNIKQ9UKE5 1360 aa23.21■■□□□ 1.31
SHOX2-206ENST00000554685 CHMP7Q8WUX9 453 aaPredicted RBP23.19■■□□□ 1.3
SHOX2-206ENST00000554685 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms