RNA–Protein interactions for RNA: ENST00000554677.1

MTHFD1-207, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 3

Gene MTHFD1, Length 783 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-207ENST00000554677 NISCHQ9Y2I1 1504 aa30.76■■■□□ 2.51
MTHFD1-207ENST00000554677 ABCC9O60706 1549 aa27.57■■■□□ 2
MTHFD1-207ENST00000554677 CCDC180Q9P1Z9 1646 aa27.56■■■□□ 2
MTHFD1-207ENST00000554677 RB1CC1Q8TDY2 1594 aa26.21■■□□□ 1.79
MTHFD1-207ENST00000554677 NACADO15069 1562 aa26.06■■□□□ 1.76
MTHFD1-207ENST00000554677 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
MTHFD1-207ENST00000554677 DCAF8L2P0C7V8 631 aa25.93■■□□□ 1.74
MTHFD1-207ENST00000554677 UNC13AQ9UPW8 1703 aa25.73■■□□□ 1.71
MTHFD1-207ENST00000554677 MYO15BQ96JP2 1530 aa25.73■■□□□ 1.71
MTHFD1-207ENST00000554677 PABPN1Q86U42 306 aaKnown RBP eCLIP25.7■■□□□ 1.7
MTHFD1-207ENST00000554677 BICRAQ9NZM4 1560 aa25.54■■□□□ 1.68
MTHFD1-207ENST00000554677 ZCCHC6Q5VYS8 1495 aaKnown RBP25.47■■□□□ 1.67
MTHFD1-207ENST00000554677 DCAF1Q9Y4B6 1507 aa25.4■■□□□ 1.66
MTHFD1-207ENST00000554677 SCRIBQ14160 1630 aa25.12■■□□□ 1.61
MTHFD1-207ENST00000554677 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
MTHFD1-207ENST00000554677 CC2D2AQ9P2K1 1620 aa24.91■■□□□ 1.58
MTHFD1-207ENST00000554677 EIF4G1Q04637 1599 aaKnown RBP24.85■■□□□ 1.57
MTHFD1-207ENST00000554677 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
MTHFD1-207ENST00000554677 NCAPD3P42695 1498 aa24.09■■□□□ 1.45
MTHFD1-207ENST00000554677 ATAD2BQ9ULI0 1458 aa24.01■■□□□ 1.43
MTHFD1-207ENST00000554677 SMARCA4P51532 1647 aa23.98■■□□□ 1.43
MTHFD1-207ENST00000554677 SMARCA2P51531 1590 aa23.91■■□□□ 1.42
MTHFD1-207ENST00000554677 HMGXB3Q12766 1538 aa23.87■■□□□ 1.41
MTHFD1-207ENST00000554677 BAZ1AQ9NRL2 1556 aaPredicted RBP23.83■■□□□ 1.41
MTHFD1-207ENST00000554677 DNAJC5Q9H3Z4 198 aa23.78■■□□□ 1.4
MTHFD1-207ENST00000554677 PEG3Q9GZU2 1588 aa23.76■■□□□ 1.39
MTHFD1-207ENST00000554677 ERCC6Q03468 1493 aa23.74■■□□□ 1.39
MTHFD1-207ENST00000554677 BAZ1BQ9UIG0 1483 aaKnown RBP23.74■■□□□ 1.39
MTHFD1-207ENST00000554677 CUX2O14529 1486 aa23.73■■□□□ 1.39
MTHFD1-207ENST00000554677 MROH2BQ7Z745 1585 aa23.72■■□□□ 1.39
MTHFD1-207ENST00000554677 NESP48681 1621 aa23.72■■□□□ 1.39
MTHFD1-207ENST00000554677 LAMC3Q9Y6N6 1575 aa23.51■■□□□ 1.35
MTHFD1-207ENST00000554677 THOC2Q8NI27 1593 aaKnown RBP23.44■■□□□ 1.34
MTHFD1-207ENST00000554677 WIZO95785 1651 aa23.44■■□□□ 1.34
MTHFD1-207ENST00000554677 KIF21AQ7Z4S6 1674 aa23.4■■□□□ 1.34
MTHFD1-207ENST00000554677 PDS5BQ9NTI5 1447 aa23.36■■□□□ 1.33
MTHFD1-207ENST00000554677 CADPSQ9ULU8 1353 aa23.35■■□□□ 1.33
MTHFD1-207ENST00000554677 RSF1Q96T23 1441 aaPredicted RBP23.24■■□□□ 1.31
MTHFD1-207ENST00000554677 MRC2Q9UBG0 1479 aa23.16■■□□□ 1.3
MTHFD1-207ENST00000554677 WDR62O43379 1518 aa23.12■■□□□ 1.29
MTHFD1-207ENST00000554677 TOP2AP11388 1531 aaKnown RBP23.09■■□□□ 1.29
MTHFD1-207ENST00000554677 CFTRP13569 1480 aa23.09■■□□□ 1.29
MTHFD1-207ENST00000554677 FANCD2Q9BXW9 1451 aa23.06■■□□□ 1.28
MTHFD1-207ENST00000554677 CEP164Q9UPV0 1460 aa23.05■■□□□ 1.28
MTHFD1-207ENST00000554677 URB2Q14146 1524 aaKnown RBP22.91■■□□□ 1.26
MTHFD1-207ENST00000554677 CCDC88BA6NC98 1476 aa22.88■■□□□ 1.25
MTHFD1-207ENST00000554677 PRDM2Q13029 1718 aa22.85■■□□□ 1.25
MTHFD1-207ENST00000554677 OSCARQ8IYS5 282 aa22.69■■□□□ 1.22
MTHFD1-207ENST00000554677 TRIM41Q8WV44 630 aa22.67■■□□□ 1.22
MTHFD1-207ENST00000554677 TOPBP1Q92547 1522 aa22.64■■□□□ 1.21
MTHFD1-207ENST00000554677 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
MTHFD1-207ENST00000554677 IFT140Q96RY7 1462 aa22.61■■□□□ 1.21
MTHFD1-207ENST00000554677 ABCC8Q09428 1581 aa22.56■■□□□ 1.2
MTHFD1-207ENST00000554677 DNMBPQ6XZF7 1577 aa22.54■■□□□ 1.2
MTHFD1-207ENST00000554677 TARBP1Q13395 1621 aaKnown RBP22.46■■□□□ 1.19
MTHFD1-207ENST00000554677 EIF4G3O43432 1585 aaKnown RBP22.45■■□□□ 1.18
MTHFD1-207ENST00000554677 AQRO60306 1485 aaKnown RBP eCLIP22.41■■□□□ 1.183e-9■■■■□ 26.1
MTHFD1-207ENST00000554677 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
MTHFD1-207ENST00000554677 RIMBP3CA6NJZ7 1639 aa22.39■■□□□ 1.17
MTHFD1-207ENST00000554677 RIMBP3BA6NNM3 1639 aa22.39■■□□□ 1.17
MTHFD1-207ENST00000554677 RIMBP3Q9UFD9 1639 aa22.39■■□□□ 1.17
MTHFD1-207ENST00000554677 RAD54L2Q9Y4B4 1467 aa22.35■■□□□ 1.17
MTHFD1-207ENST00000554677 CHD1O14646 1710 aa22.32■■□□□ 1.16
MTHFD1-207ENST00000554677 SOGA1O94964 1423 aa22.31■■□□□ 1.16
MTHFD1-207ENST00000554677 ARHGEF11O15085 1522 aa22.3■■□□□ 1.16
MTHFD1-207ENST00000554677 TDRD9Q8NDG6 1382 aaKnown RBP22.28■■□□□ 1.16
MTHFD1-207ENST00000554677 CUX1P39880 1505 aa22.27■■□□□ 1.16
MTHFD1-207ENST00000554677 FGD5Q6ZNL6 1462 aa22.26■■□□□ 1.15
MTHFD1-207ENST00000554677 FBLN2P98095 1184 aa22.22■■□□□ 1.15
MTHFD1-207ENST00000554677 SUPT5HO00267 1087 aaKnown RBP22.19■■□□□ 1.14
MTHFD1-207ENST00000554677 WDR97A6NE52 1622 aa22.17■■□□□ 1.14
MTHFD1-207ENST00000554677 CYB5RLQ6IPT4 315 aa22.16■■□□□ 1.14
MTHFD1-207ENST00000554677 SNAPC4Q5SXM2 1469 aa22.15■■□□□ 1.14
MTHFD1-207ENST00000554677 ARAP1Q96P48 1450 aa22.1■■□□□ 1.13
MTHFD1-207ENST00000554677 GRIN2BQ13224 1484 aa22.09■■□□□ 1.13
MTHFD1-207ENST00000554677 MAGI1Q96QZ7 1491 aaPredicted RBP22.09■■□□□ 1.13
MTHFD1-207ENST00000554677 CHMP7Q8WUX9 453 aaPredicted RBP22.07■■□□□ 1.12
MTHFD1-207ENST00000554677 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
MTHFD1-207ENST00000554677 GAPVD1Q14C86 1478 aa22.03■■□□□ 1.12
MTHFD1-207ENST00000554677 ABCA10Q8WWZ4 1543 aa22.02■■□□□ 1.12
MTHFD1-207ENST00000554677 PBRM1Q86U86 1689 aa22.02■■□□□ 1.12
MTHFD1-207ENST00000554677 SYNJ2O15056 1496 aa22.02■■□□□ 1.12
MTHFD1-207ENST00000554677 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
MTHFD1-207ENST00000554677 ABCA5Q8WWZ7 1642 aa21.98■■□□□ 1.11
MTHFD1-207ENST00000554677 BIVM-ERCC5R4GMW8 1640 aa21.91■■□□□ 1.1
MTHFD1-207ENST00000554677 WRNQ14191 1432 aaPredicted RBP eCLIP21.9■■□□□ 1.1
MTHFD1-207ENST00000554677 TOP2BQ02880 1626 aa21.9■■□□□ 1.1
MTHFD1-207ENST00000554677 TRHP20396 242 aaPredicted RBP21.85■■□□□ 1.09
MTHFD1-207ENST00000554677 GRIN2AQ12879 1464 aa21.81■■□□□ 1.08
MTHFD1-207ENST00000554677 ADAMTS12P58397 1594 aa21.79■■□□□ 1.08
MTHFD1-207ENST00000554677 NUP160Q12769 1436 aa21.76■■□□□ 1.07
MTHFD1-207ENST00000554677 CEP170Q5SW79 1584 aa21.75■■□□□ 1.07
MTHFD1-207ENST00000554677 ERCC6L2Q5T890 1561 aa21.75■■□□□ 1.07
MTHFD1-207ENST00000554677 FHAD1B1AJZ9 1412 aa21.74■■□□□ 1.07
MTHFD1-207ENST00000554677 ERICH3Q5RHP9 1530 aa21.73■■□□□ 1.07
MTHFD1-207ENST00000554677 SHROOM2Q13796 1616 aa21.67■■□□□ 1.06
MTHFD1-207ENST00000554677 JPH4Q96JJ6 628 aa21.57■■□□□ 1.04
MTHFD1-207ENST00000554677 PRG4Q92954 1404 aaPredicted RBP21.54■■□□□ 1.04
MTHFD1-207ENST00000554677 IGF1RP08069 1367 aa21.51■■□□□ 1.03
MTHFD1-207ENST00000554677 RUSC2Q8N2Y8 1516 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms