RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 NISCHQ9Y2I1 1504 aa60.97■■■■■ 7.35
FOXA1-204ENST00000554607 ABCC9O60706 1549 aa55.06■■■■■ 6.41
FOXA1-204ENST00000554607 CCDC180Q9P1Z9 1646 aa54.81■■■■■ 6.36
FOXA1-204ENST00000554607 RB1CC1Q8TDY2 1594 aa52.34■■■■■ 5.97
FOXA1-204ENST00000554607 NACADO15069 1562 aa51.93■■■■■ 5.9
FOXA1-204ENST00000554607 DNAJC5BQ9UF47 199 aa51.9■■■■■ 5.9
FOXA1-204ENST00000554607 DCAF8L2P0C7V8 631 aa51.65■■■■■ 5.86
FOXA1-204ENST00000554607 PABPN1Q86U42 306 aaKnown RBP eCLIP51.25■■■■■ 5.79
FOXA1-204ENST00000554607 MYO15BQ96JP2 1530 aa51.15■■■■■ 5.78
FOXA1-204ENST00000554607 UNC13AQ9UPW8 1703 aa51.04■■■■■ 5.76
FOXA1-204ENST00000554607 BICRAQ9NZM4 1560 aa50.75■■■■■ 5.71
FOXA1-204ENST00000554607 ZCCHC6Q5VYS8 1495 aaKnown RBP50.44■■■■■ 5.66
FOXA1-204ENST00000554607 DCAF1Q9Y4B6 1507 aa50.37■■■■■ 5.65
FOXA1-204ENST00000554607 SHROOM4Q9ULL8 1493 aa50.16■■■■■ 5.62
FOXA1-204ENST00000554607 SCRIBQ14160 1630 aa49.88■■■■■ 5.58
FOXA1-204ENST00000554607 CC2D2AQ9P2K1 1620 aa49.72■■■■■ 5.55
FOXA1-204ENST00000554607 CECR2Q9BXF3 1484 aa49.67■■■■■ 5.54
FOXA1-204ENST00000554607 EIF4G1Q04637 1599 aaKnown RBP49.57■■■■■ 5.53
FOXA1-204ENST00000554607 NCAPD3P42695 1498 aa47.96■■■■■ 5.27
FOXA1-204ENST00000554607 DNAJC5Q9H3Z4 198 aa47.95■■■■■ 5.27
FOXA1-204ENST00000554607 ATAD2BQ9ULI0 1458 aa47.73■■■■■ 5.23
FOXA1-204ENST00000554607 CUX2O14529 1486 aa47.64■■■■■ 5.22
FOXA1-204ENST00000554607 SMARCA2P51531 1590 aa47.62■■■■■ 5.21
FOXA1-204ENST00000554607 ERCC6Q03468 1493 aa47.61■■■■■ 5.21
FOXA1-204ENST00000554607 SMARCA4P51532 1647 aa47.58■■■■■ 5.21
FOXA1-204ENST00000554607 HMGXB3Q12766 1538 aa47.53■■■■■ 5.2
FOXA1-204ENST00000554607 BAZ1AQ9NRL2 1556 aaPredicted RBP47.36■■■■■ 5.17
FOXA1-204ENST00000554607 BAZ1BQ9UIG0 1483 aaKnown RBP47.27■■■■■ 5.16
FOXA1-204ENST00000554607 NESP48681 1621 aa47.19■■■■■ 5.15
FOXA1-204ENST00000554607 PEG3Q9GZU2 1588 aa47.15■■■■■ 5.14
FOXA1-204ENST00000554607 MROH2BQ7Z745 1585 aa46.93■■■■■ 5.1
FOXA1-204ENST00000554607 LAMC3Q9Y6N6 1575 aa46.9■■■■■ 5.1
FOXA1-204ENST00000554607 THOC2Q8NI27 1593 aaKnown RBP46.76■■■■■ 5.08
FOXA1-204ENST00000554607 PDS5BQ9NTI5 1447 aa46.7■■■■■ 5.07
FOXA1-204ENST00000554607 KIF21AQ7Z4S6 1674 aa46.55■■■■■ 5.04
FOXA1-204ENST00000554607 CADPSQ9ULU8 1353 aa46.5■■■■■ 5.03
FOXA1-204ENST00000554607 WIZO95785 1651 aa46.33■■■■■ 5.01
FOXA1-204ENST00000554607 MRC2Q9UBG0 1479 aa46.25■■■■■ 4.99
FOXA1-204ENST00000554607 WDR62O43379 1518 aa46.12■■■■■ 4.97
FOXA1-204ENST00000554607 CEP164Q9UPV0 1460 aa46.01■■■■■ 4.96
FOXA1-204ENST00000554607 FANCD2Q9BXW9 1451 aa45.93■■■■■ 4.94
FOXA1-204ENST00000554607 RSF1Q96T23 1441 aaPredicted RBP45.9■■■■■ 4.94
FOXA1-204ENST00000554607 CFTRP13569 1480 aa45.88■■■■■ 4.94
FOXA1-204ENST00000554607 TOP2AP11388 1531 aaKnown RBP45.77■■■■■ 4.92
FOXA1-204ENST00000554607 TRIM41Q8WV44 630 aa45.7■■■■■ 4.91
FOXA1-204ENST00000554607 URB2Q14146 1524 aaKnown RBP45.52■■■■■ 4.88
FOXA1-204ENST00000554607 OSCARQ8IYS5 282 aa45.48■■■■■ 4.87
FOXA1-204ENST00000554607 PRDM2Q13029 1718 aa45.32■■■■■ 4.85
FOXA1-204ENST00000554607 CCDC88BA6NC98 1476 aa45.28■■■■■ 4.84
FOXA1-204ENST00000554607 IFT140Q96RY7 1462 aa45.12■■■■■ 4.81
FOXA1-204ENST00000554607 TOPBP1Q92547 1522 aa45.01■■■■■ 4.8
FOXA1-204ENST00000554607 ZNF608Q9ULD9 1512 aaPredicted RBP45.01■■■■■ 4.8
FOXA1-204ENST00000554607 ABCC8Q09428 1581 aa45■■■■■ 4.79
FOXA1-204ENST00000554607 DNMBPQ6XZF7 1577 aa44.82■■■■■ 4.77
FOXA1-204ENST00000554607 RIMBP3CA6NJZ7 1639 aa44.79■■■■■ 4.76
FOXA1-204ENST00000554607 RIMBP3BA6NNM3 1639 aa44.79■■■■■ 4.76
FOXA1-204ENST00000554607 RIMBP3Q9UFD9 1639 aa44.79■■■■■ 4.76
FOXA1-204ENST00000554607 EIF4G3O43432 1585 aaKnown RBP44.73■■■■■ 4.75
FOXA1-204ENST00000554607 ARHGEF11O15085 1522 aa44.64■■■■■ 4.74
FOXA1-204ENST00000554607 TARBP1Q13395 1621 aaKnown RBP44.61■■■■■ 4.73
FOXA1-204ENST00000554607 AQRO60306 1485 aaKnown RBP eCLIP44.6■■■■■ 4.731e-10■■■■□ 24.3
FOXA1-204ENST00000554607 POLA1P09884 1462 aaPredicted RBP44.53■■■■■ 4.72
FOXA1-204ENST00000554607 CHD1O14646 1710 aa44.44■■■■■ 4.7
FOXA1-204ENST00000554607 FBLN2P98095 1184 aa44.43■■■■■ 4.7
FOXA1-204ENST00000554607 CYB5RLQ6IPT4 315 aa44.4■■■■■ 4.7
FOXA1-204ENST00000554607 SOGA1O94964 1423 aa44.38■■■■■ 4.69
FOXA1-204ENST00000554607 RAD54L2Q9Y4B4 1467 aa44.36■■■■■ 4.69
FOXA1-204ENST00000554607 TDRD9Q8NDG6 1382 aaKnown RBP44.3■■■■■ 4.68
FOXA1-204ENST00000554607 FGD5Q6ZNL6 1462 aa44.21■■■■■ 4.67
FOXA1-204ENST00000554607 WDR97A6NE52 1622 aa44.21■■■■■ 4.67
FOXA1-204ENST00000554607 ARAP1Q96P48 1450 aa44.16■■■■■ 4.66
FOXA1-204ENST00000554607 SNAPC4Q5SXM2 1469 aa44.13■■■■■ 4.65
FOXA1-204ENST00000554607 CUX1P39880 1505 aa44.11■■■■■ 4.65
FOXA1-204ENST00000554607 CHMP7Q8WUX9 453 aaPredicted RBP44.09■■■■■ 4.65
FOXA1-204ENST00000554607 MAGI1Q96QZ7 1491 aaPredicted RBP44.05■■■■■ 4.64
FOXA1-204ENST00000554607 GRIN2BQ13224 1484 aa44.02■■■■■ 4.64
FOXA1-204ENST00000554607 TRHP20396 242 aaPredicted RBP44.01■■■■■ 4.64
FOXA1-204ENST00000554607 SYNJ1O43426 1573 aa43.96■■■■■ 4.63
FOXA1-204ENST00000554607 CLASP1Q7Z460 1538 aa43.95■■■■■ 4.63
FOXA1-204ENST00000554607 SYNJ2O15056 1496 aa43.89■■■■■ 4.62
FOXA1-204ENST00000554607 GAPVD1Q14C86 1478 aa43.82■■■■■ 4.6
FOXA1-204ENST00000554607 PBRM1Q86U86 1689 aa43.73■■■■■ 4.59
FOXA1-204ENST00000554607 ABCA10Q8WWZ4 1543 aa43.73■■■■■ 4.59
FOXA1-204ENST00000554607 SUPT5HO00267 1087 aaKnown RBP43.7■■■■■ 4.59
FOXA1-204ENST00000554607 ABCA5Q8WWZ7 1642 aa43.62■■■■■ 4.57
FOXA1-204ENST00000554607 WRNQ14191 1432 aaPredicted RBP eCLIP43.54■■■■■ 4.56
FOXA1-204ENST00000554607 GRIN2AQ12879 1464 aa43.43■■■■■ 4.54
FOXA1-204ENST00000554607 TOP2BQ02880 1626 aa43.35■■■■■ 4.53
FOXA1-204ENST00000554607 BIVM-ERCC5R4GMW8 1640 aa43.33■■■■■ 4.53
FOXA1-204ENST00000554607 ADAMTS12P58397 1594 aa43.33■■■■■ 4.53
FOXA1-204ENST00000554607 NUP160Q12769 1436 aa43.3■■■■■ 4.52
FOXA1-204ENST00000554607 FHAD1B1AJZ9 1412 aa43.27■■■■■ 4.52
FOXA1-204ENST00000554607 CEP170Q5SW79 1584 aa43.23■■■■■ 4.51
FOXA1-204ENST00000554607 ERCC6L2Q5T890 1561 aa43.2■■■■■ 4.51
FOXA1-204ENST00000554607 ERICH3Q5RHP9 1530 aa43.18■■■■■ 4.5
FOXA1-204ENST00000554607 SHROOM2Q13796 1616 aa43.1■■■■■ 4.49
FOXA1-204ENST00000554607 AEBP2Q6ZN18 517 aaPredicted RBP42.97■■■■■ 4.47
FOXA1-204ENST00000554607 JPH4Q96JJ6 628 aa42.92■■■■■ 4.46
FOXA1-204ENST00000554607 PRG4Q92954 1404 aaPredicted RBP42.91■■■■■ 4.46
FOXA1-204ENST00000554607 RUSC2Q8N2Y8 1516 aa42.71■■■■■ 4.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms