RNA–Protein interactions for RNA: ENST00000554556.5

GABRB3-206, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

TSL 5

Gene GABRB3, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-206ENST00000554556 NISCHQ9Y2I1 1504 aa55.67■■■■■ 6.5
GABRB3-206ENST00000554556 ABCC9O60706 1549 aa49.99■■■■■ 5.59
GABRB3-206ENST00000554556 CCDC180Q9P1Z9 1646 aa49.99■■■■■ 5.59
GABRB3-206ENST00000554556 RB1CC1Q8TDY2 1594 aa47.62■■■■■ 5.21
GABRB3-206ENST00000554556 NACADO15069 1562 aa47.29■■■■■ 5.16
GABRB3-206ENST00000554556 DCAF8L2P0C7V8 631 aa47.1■■■■■ 5.13
GABRB3-206ENST00000554556 DNAJC5BQ9UF47 199 aa46.89■■■■■ 5.1
GABRB3-206ENST00000554556 MYO15BQ96JP2 1530 aa46.63■■■■■ 5.05
GABRB3-206ENST00000554556 PABPN1Q86U42 306 aaKnown RBP eCLIP46.55■■■■■ 5.04
GABRB3-206ENST00000554556 UNC13AQ9UPW8 1703 aa46.49■■■■■ 5.03
GABRB3-206ENST00000554556 BICRAQ9NZM4 1560 aa46.15■■■■■ 4.98
GABRB3-206ENST00000554556 ZCCHC6Q5VYS8 1495 aaKnown RBP46.1■■■■■ 4.97
GABRB3-206ENST00000554556 DCAF1Q9Y4B6 1507 aa46.01■■■■■ 4.96
GABRB3-206ENST00000554556 SHROOM4Q9ULL8 1493 aa45.61■■■■■ 4.89
GABRB3-206ENST00000554556 SCRIBQ14160 1630 aa45.5■■■■■ 4.87
GABRB3-206ENST00000554556 CC2D2AQ9P2K1 1620 aa45.16■■■■■ 4.82
GABRB3-206ENST00000554556 CECR2Q9BXF3 1484 aa45.05■■■■■ 4.8
GABRB3-206ENST00000554556 EIF4G1Q04637 1599 aaKnown RBP45.05■■■■■ 4.8
GABRB3-206ENST00000554556 NCAPD3P42695 1498 aa43.64■■■■■ 4.58
GABRB3-206ENST00000554556 ATAD2BQ9ULI0 1458 aa43.48■■■■■ 4.55
GABRB3-206ENST00000554556 SMARCA4P51532 1647 aa43.42■■■■■ 4.54
GABRB3-206ENST00000554556 SMARCA2P51531 1590 aa43.41■■■■■ 4.54
GABRB3-206ENST00000554556 HMGXB3Q12766 1538 aa43.3■■■■■ 4.52
GABRB3-206ENST00000554556 BAZ1AQ9NRL2 1556 aaPredicted RBP43.24■■■■■ 4.51
GABRB3-206ENST00000554556 ERCC6Q03468 1493 aa43.22■■■■■ 4.51
GABRB3-206ENST00000554556 DNAJC5Q9H3Z4 198 aa43.18■■■■■ 4.5
GABRB3-206ENST00000554556 CUX2O14529 1486 aa43.14■■■■■ 4.5
GABRB3-206ENST00000554556 BAZ1BQ9UIG0 1483 aaKnown RBP43.08■■■■■ 4.49
GABRB3-206ENST00000554556 PEG3Q9GZU2 1588 aa43■■■■■ 4.47
GABRB3-206ENST00000554556 NESP48681 1621 aa42.9■■■■■ 4.46
GABRB3-206ENST00000554556 MROH2BQ7Z745 1585 aa42.86■■■■■ 4.45
GABRB3-206ENST00000554556 LAMC3Q9Y6N6 1575 aa42.68■■■■■ 4.42
GABRB3-206ENST00000554556 THOC2Q8NI27 1593 aaKnown RBP42.48■■■■■ 4.39
GABRB3-206ENST00000554556 PDS5BQ9NTI5 1447 aa42.47■■■■■ 4.39
GABRB3-206ENST00000554556 KIF21AQ7Z4S6 1674 aa42.37■■■■■ 4.37
GABRB3-206ENST00000554556 WIZO95785 1651 aa42.36■■■■■ 4.37
GABRB3-206ENST00000554556 CADPSQ9ULU8 1353 aa42.33■■■■■ 4.37
GABRB3-206ENST00000554556 MRC2Q9UBG0 1479 aa42.04■■■■■ 4.32
GABRB3-206ENST00000554556 RSF1Q96T23 1441 aaPredicted RBP41.98■■■■■ 4.31
GABRB3-206ENST00000554556 WDR62O43379 1518 aa41.92■■■■■ 4.3
GABRB3-206ENST00000554556 CEP164Q9UPV0 1460 aa41.89■■■■■ 4.3
GABRB3-206ENST00000554556 TOP2AP11388 1531 aaKnown RBP41.84■■■■■ 4.29
GABRB3-206ENST00000554556 FANCD2Q9BXW9 1451 aa41.83■■■■■ 4.29
GABRB3-206ENST00000554556 CFTRP13569 1480 aa41.81■■■■■ 4.28
GABRB3-206ENST00000554556 URB2Q14146 1524 aaKnown RBP41.44■■■■■ 4.23
GABRB3-206ENST00000554556 PRDM2Q13029 1718 aa41.42■■■■■ 4.22
GABRB3-206ENST00000554556 CCDC88BA6NC98 1476 aa41.37■■■■■ 4.21
GABRB3-206ENST00000554556 TRIM41Q8WV44 630 aa41.26■■■■■ 4.2
GABRB3-206ENST00000554556 OSCARQ8IYS5 282 aa41.24■■■■■ 4.19
GABRB3-206ENST00000554556 IFT140Q96RY7 1462 aa41.06■■■■■ 4.16
GABRB3-206ENST00000554556 ABCC8Q09428 1581 aa41.03■■■■■ 4.16
GABRB3-206ENST00000554556 TOPBP1Q92547 1522 aa41.03■■■■■ 4.16
GABRB3-206ENST00000554556 ZNF608Q9ULD9 1512 aaPredicted RBP40.93■■■■■ 4.14
GABRB3-206ENST00000554556 DNMBPQ6XZF7 1577 aa40.87■■■■■ 4.13
GABRB3-206ENST00000554556 EIF4G3O43432 1585 aaKnown RBP40.71■■■■■ 4.11
GABRB3-206ENST00000554556 TARBP1Q13395 1621 aaKnown RBP40.64■■■■■ 4.1
GABRB3-206ENST00000554556 RIMBP3CA6NJZ7 1639 aa40.6■■■■■ 4.09
GABRB3-206ENST00000554556 RIMBP3BA6NNM3 1639 aa40.6■■■■■ 4.09
GABRB3-206ENST00000554556 RIMBP3Q9UFD9 1639 aa40.6■■■■■ 4.09
GABRB3-206ENST00000554556 AQRO60306 1485 aaKnown RBP eCLIP40.59■■■■■ 4.09
GABRB3-206ENST00000554556 POLA1P09884 1462 aaPredicted RBP40.58■■■■■ 4.09
GABRB3-206ENST00000554556 SOGA1O94964 1423 aa40.47■■■■■ 4.07
GABRB3-206ENST00000554556 ARHGEF11O15085 1522 aa40.47■■■■■ 4.07
GABRB3-206ENST00000554556 CHD1O14646 1710 aa40.45■■■■■ 4.07
GABRB3-206ENST00000554556 RAD54L2Q9Y4B4 1467 aa40.44■■■■■ 4.06
GABRB3-206ENST00000554556 FBLN2P98095 1184 aa40.41■■■■■ 4.06
GABRB3-206ENST00000554556 TDRD9Q8NDG6 1382 aaKnown RBP40.35■■■■■ 4.05
GABRB3-206ENST00000554556 FGD5Q6ZNL6 1462 aa40.33■■■■■ 4.05
GABRB3-206ENST00000554556 WDR97A6NE52 1622 aa40.3■■■■■ 4.04
GABRB3-206ENST00000554556 CUX1P39880 1505 aa40.27■■■■■ 4.04
GABRB3-206ENST00000554556 CYB5RLQ6IPT4 315 aa40.24■■■■■ 4.03
GABRB3-206ENST00000554556 SUPT5HO00267 1087 aaKnown RBP40.17■■■■■ 4.02
GABRB3-206ENST00000554556 SNAPC4Q5SXM2 1469 aa40.17■■■■■ 4.02
GABRB3-206ENST00000554556 CHMP7Q8WUX9 453 aaPredicted RBP40.13■■■■■ 4.01
GABRB3-206ENST00000554556 GRIN2BQ13224 1484 aa40.11■■■■■ 4.01
GABRB3-206ENST00000554556 MAGI1Q96QZ7 1491 aaPredicted RBP40.11■■■■■ 4.01
GABRB3-206ENST00000554556 ARAP1Q96P48 1450 aa40.05■■■■■ 4
GABRB3-206ENST00000554556 SYNJ1O43426 1573 aa40■■■■□ 3.99
GABRB3-206ENST00000554556 SYNJ2O15056 1496 aa39.96■■■■□ 3.99
GABRB3-206ENST00000554556 CLASP1Q7Z460 1538 aa39.96■■■■□ 3.99
GABRB3-206ENST00000554556 GAPVD1Q14C86 1478 aa39.95■■■■□ 3.99
GABRB3-206ENST00000554556 PBRM1Q86U86 1689 aa39.92■■■■□ 3.98
GABRB3-206ENST00000554556 ABCA10Q8WWZ4 1543 aa39.9■■■■□ 3.98
GABRB3-206ENST00000554556 TRHP20396 242 aaPredicted RBP39.84■■■■□ 3.97
GABRB3-206ENST00000554556 ABCA5Q8WWZ7 1642 aa39.8■■■■□ 3.96
GABRB3-206ENST00000554556 WRNQ14191 1432 aaPredicted RBP eCLIP39.77■■■■□ 3.96
GABRB3-206ENST00000554556 TOP2BQ02880 1626 aa39.65■■■■□ 3.94
GABRB3-206ENST00000554556 BIVM-ERCC5R4GMW8 1640 aa39.65■■■■□ 3.94
GABRB3-206ENST00000554556 GRIN2AQ12879 1464 aa39.56■■■■□ 3.92
GABRB3-206ENST00000554556 ADAMTS12P58397 1594 aa39.5■■■■□ 3.91
GABRB3-206ENST00000554556 FHAD1B1AJZ9 1412 aa39.46■■■■□ 3.91
GABRB3-206ENST00000554556 NUP160Q12769 1436 aa39.42■■■■□ 3.9
GABRB3-206ENST00000554556 ERICH3Q5RHP9 1530 aa39.41■■■■□ 3.9
GABRB3-206ENST00000554556 CEP170Q5SW79 1584 aa39.38■■■■□ 3.9
GABRB3-206ENST00000554556 ERCC6L2Q5T890 1561 aa39.29■■■■□ 3.88
GABRB3-206ENST00000554556 SHROOM2Q13796 1616 aa39.24■■■■□ 3.87
GABRB3-206ENST00000554556 JPH4Q96JJ6 628 aa39.1■■■■□ 3.85
GABRB3-206ENST00000554556 PRG4Q92954 1404 aaPredicted RBP39.07■■■■□ 3.85
GABRB3-206ENST00000554556 RUSC2Q8N2Y8 1516 aa38.94■■■■□ 3.82
GABRB3-206ENST00000554556 KIF27Q86VH2 1401 aa38.93■■■■□ 3.82
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms